View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11810_low_1 (Length: 851)
Name: NF11810_low_1
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_low_1 |
 | |
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| [»] chr5 (11 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 765; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 765; E-Value: 0
Query Start/End: Original strand, 18 - 851
Target Start/End: Original strand, 3219248 - 3220093
Alignment:
| Q |
18 |
ggtccaaaatagcttttccttgaagattaaactcataagcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaatttttcaa |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3219248 |
ggtctaaaatagcttttccttgaagattaaactcataagcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaatttttcaa |
3219347 |
T |
|
| Q |
118 |
cagtgctacaattccactgagatgaaaacaagacattgaggtaccattattaattgttaaatcaacatttacagttttgtttgattgcaatatcaatcaa |
217 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3219348 |
cagtgctgcaattccattgagatgaaaacaagacattgaggtaccattattaattgttaaatcaacatttacagttttgtttgattgcaatatcaatcaa |
3219447 |
T |
|
| Q |
218 |
tattattcaaaaattatggaaatacgattttcttttcctgattgagtaaattaagtacattgtttgtgtagacgatctttacttactactattactcagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
3219448 |
tattattcaaaaattatggaaatacgattttcttttgctgattgagtaaattaagtacattgtttctgtagacgatctttacttactactattactcagt |
3219547 |
T |
|
| Q |
318 |
gcgattaggcacacttgccaaattatgaagggtggcaaaggattctggatttcactacagtacataaattttgtaaagtttgttggcaattgtcaatagc |
417 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3219548 |
gcgatttggcacacttgccaaattatgaagggtggcaaaggattctggatttcactacagtacataaattttgtaaagtttgttggcaattgtcaatagc |
3219647 |
T |
|
| Q |
418 |
tacattggtgcttaatctgatcaaccatagtgctta------------agtttctggaagtgttgatactatgtcacctatgattattggagtgtcatgt |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3219648 |
tacattggtgcttaatctgatcaaccatagtgcttaagtttctggatcagtttctggaagtgttgatactatgtcacctatgattattggagtgtcatgt |
3219747 |
T |
|
| Q |
506 |
tatagccattgttttctttaacatgtttgtgtgttggttcacttttacttgaaacaattattaattaaagtagcattaataatcattttacgatctcaat |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
3219748 |
tatagccattgttttctttaacatgtttgtgtgttggttcacttttacttgaaacaattattaattaaagtagaattaataatcattttacgatctcaat |
3219847 |
T |
|
| Q |
606 |
agaaatttgaactttataaattcaaattaaaaggttaaactcttatcaatgaagtgacacacgaggaattttattgctatatctatcttgtcgatatttc |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
3219848 |
agaaatttgaactttataaattcaaattaaaaggttaaactcttatcaatgaagtgacacacttggaattttattgctatatctatcttgtcgatatttc |
3219947 |
T |
|
| Q |
706 |
atttaacatctctttagtcaaaaacatttattggcttatatgtatatgtaaaaacttattataacaataatgctgttgcatttccaataacaaatacaag |
805 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3219948 |
attcaacatctctttagtcaaaaacatttattggcttatatgtatatgtaaaaacttattataacaataatgctgttgcatttccaataacaaatacaag |
3220047 |
T |
|
| Q |
806 |
taccaagtgaattaccatgaatttctggtacaaatatattccattc |
851 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3220048 |
taccaagtgaattaccatgaatttctggtacaaatatattccattc |
3220093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 35 - 463
Target Start/End: Original strand, 3224189 - 3224617
Alignment:
| Q |
35 |
ccttgaagattaaactcataagcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaatttt-tcaacagtgctacaattcca |
133 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||| |||||||||| | |||| |||||||| || |||||||| |
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|
| T |
3224189 |
ccttgaagattaacctcatatgcagttgtcatgattgccgattttatagcagacagagaccaatctggatgatagttttatcaacagtactgcaattcca |
3224288 |
T |
|
| Q |
134 |
ctgagatgaaaacaagacattgaggtaccattattaattgttaaatcaacatttacagttttgtttgattgcaatatcaatcaatattattcaaaaatta |
233 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |||||||||||||||||||||||||||| |||| |
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|
| T |
3224289 |
ctgagatgagaacaagacattgaggtaccattattaattattaaatcaacgtctacagttttgttcgattgcaatatcaatcaatattattcaatcatta |
3224388 |
T |
|
| Q |
234 |
tggaaatacgattttcttttcctgattgagtaaattaagtacattgtttgtgtagacgatctttacttactactattactcagtgcgattaggcacactt |
333 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||| ||| || ||||| |||||||| | || |||| |
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| T |
3224389 |
cctaaatacgattttctttat-tgagtgagtaaattaagtacagtgtttgtgtagatgatctttacttgctagtagtactcggtgcgatttgccaaactt |
3224487 |
T |
|
| Q |
334 |
gccaaattatgaagggtggcaaaggattctggatttcactacagtacataaattttgtaaagtttgttggcaattgtcaatagctacattggtgcttaat |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||| ||||||||||||| | ||||| | |||||| |
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|
| T |
3224488 |
gccaaattatgaagggtggcaaaggattctggatttcaatacagtacatgaattttataaagtttgttgccaattgtcaatagttgcattgttccttaat |
3224587 |
T |
|
| Q |
434 |
ctgatcaaccatagtgcttaagtttctgga |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3224588 |
ctgatcaaccatagtgcttaagtttctgga |
3224617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 530 - 822
Target Start/End: Original strand, 3224707 - 3225010
Alignment:
| Q |
530 |
gtttgtgtgttggttcacttttacttgaaaca--attattaattaaagtagcattaataatcattttacgat---ctcaatagaaatttgaactttataa |
624 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| || ||| |||||| ||||||||||||| |
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|
| T |
3224707 |
gtttgtgtgtaggttcacttttacttgaaaaattattattaatcaaagtagcattaataatcattttacaattatctcggtagaaagttgaactttataa |
3224806 |
T |
|
| Q |
625 |
attcaaattaaaaggttaaactcttatcaatgaagtgacacacgaggaattttattgctatatctatcttgtcgatatttcatttaacatctctttagtc |
724 |
Q |
| |
|
||||| ||||| |||| |||| |||||| || || ||||||| ||| |||||||| |||| |||| |||||||||||||||| |||||||| |||| |
|
|
| T |
3224807 |
attcaggttaaatggttgaactgttatcagtgcagcgacacacatggacttttattggtatacctatgttgtcgatatttcattcaacatctc--cagtc |
3224904 |
T |
|
| Q |
725 |
aaaaacatttattggcttatatgta--tatgtaaa------aacttattataacaataatgctgttgcatttccaataacaaatacaagtaccaagtgaa |
816 |
Q |
| |
|
||||||||||||||| ||| ||||| ||| |||| || ||||||||||||||||||| ||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
3224905 |
aaaaacatttattggtttacatgtatgtatataaaaaagataaattattataacaataatgctattgtatttccaataacaaatataaataccaagtgaa |
3225004 |
T |
|
| Q |
817 |
ttacca |
822 |
Q |
| |
|
|||||| |
|
|
| T |
3225005 |
ttacca |
3225010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 3215742 - 3215886
Alignment:
| Q |
18 |
ggtccaaaatagcttttccttgaagattaaactcataagcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaatttttcaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
3215742 |
ggtccaaaatagcttttccttgaagattaacttcataagcagttgtcatgattgctgattttatagcagcgggagaccaatctggatgagagtttttcaa |
3215841 |
T |
|
| Q |
118 |
cagtgctacaattccactgagatgaaaacaagacattgaggtacc |
162 |
Q |
| |
|
||| || |||||||||||||||| |||||||||||||||||| |
|
|
| T |
3215842 |
cagagcagcaattccactgagatgtggacaagacattgaggtacc |
3215886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 3207806 - 3207950
Alignment:
| Q |
18 |
ggtccaaaatagcttttccttgaagattaaactcataagcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaatttttcaa |
117 |
Q |
| |
|
|||||||||||| || ||||||||||||| || || |||||||||||||||||| |||||||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
3207806 |
ggtccaaaataggcttaccttgaagattaacctgattagcagttgtcatgattgcggattttatagcagctggagaccaatctggatgagagtttttcaa |
3207905 |
T |
|
| Q |
118 |
cagtgctacaattccactgagatgaaaacaagacattgaggtacc |
162 |
Q |
| |
|
|| || |||| ||||| |||||| ||| |||||||||||||| |
|
|
| T |
3207906 |
caaagcagcaatgccactaagatgaggacatgacattgaggtacc |
3207950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 55 - 156
Target Start/End: Complemental strand, 3179109 - 3179008
Alignment:
| Q |
55 |
agcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaatttttcaacagtgctacaattccactgagatgaaaacaagacatt |
154 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||| ||| ||||||||| |||| | || ||| |||| |||||||||||| |||||||||| |
|
|
| T |
3179109 |
agcagttgtcatgattgctgattttattgcagctggcgaccaatcaggatgagaacttttgatcaatgcagcaatgccactgagatgaggacaagacatt |
3179010 |
T |
|
| Q |
155 |
ga |
156 |
Q |
| |
|
|| |
|
|
| T |
3179009 |
ga |
3179008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 55 - 156
Target Start/End: Original strand, 3239731 - 3239832
Alignment:
| Q |
55 |
agcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaatttttcaacagtgctacaattccactgagatgaaaacaagacatt |
154 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||| ||| ||||||||| |||| | || ||| |||| |||||||||||| |||||||||| |
|
|
| T |
3239731 |
agcagttgtcatgattgctgattttattgcagctggcgaccaatcaggatgagaacttttgatcaatgcagcaatgccactgagatgaggacaagacatt |
3239830 |
T |
|
| Q |
155 |
ga |
156 |
Q |
| |
|
|| |
|
|
| T |
3239831 |
ga |
3239832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 3201832 - 3201976
Alignment:
| Q |
18 |
ggtccaaaatagcttttccttgaagattaaactcataagcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaatttttcaa |
117 |
Q |
| |
|
|||||||||||| || || || ||||||| | || |||||| ||||||||||||||||||||||| || || |||| ||||||||| || |||||||| |
|
|
| T |
3201832 |
ggtccaaaataggcttaccatggagattaacatgattagcagtcgtcatgattgctgattttatagctgctggtgaccaatctggatgcgagtttttcaa |
3201931 |
T |
|
| Q |
118 |
cagtgctacaattccactgagatgaaaacaagacattgaggtacc |
162 |
Q |
| |
|
|| || |||| ||||| |||||| ||||||||| |||||||| |
|
|
| T |
3201932 |
caaagcagcaatgccactaagatgaggacaagacatcgaggtacc |
3201976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 162
Target Start/End: Original strand, 3230933 - 3231039
Alignment:
| Q |
56 |
gcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaatttttcaacagtgctacaattccactgagatgaaaacaagacattg |
155 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||| ||| || |||||| |||| | || ||| |||| ||||| || ||| ||||||||||| |
|
|
| T |
3230933 |
gcagttgtcatgattgctgattttatagcggctggcgaccaatcagggtgagaacttttgatcaatgcagcaataccacttaggtgaggacaagacattg |
3231032 |
T |
|
| Q |
156 |
aggtacc |
162 |
Q |
| |
|
| ||||| |
|
|
| T |
3231033 |
aagtacc |
3231039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 3220700 - 3220758
Alignment:
| Q |
56 |
gcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaattttt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||| ||| || |||||| |||| |
|
|
| T |
3220700 |
gcagttgtcatgattgctgattttatagcggctggtgaccaatcagggtgagaactttt |
3220758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 114
Target Start/End: Original strand, 3225685 - 3225743
Alignment:
| Q |
56 |
gcagttgtcatgattgctgattttatagcagcgggagaccgatctggatgagaattttt |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||| || || |||| ||| ||||||||| |||| |
|
|
| T |
3225685 |
gcagttgtcatgattgccgattttatagcggctggtgaccaatcaggatgagaactttt |
3225743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 46215298 - 46215262
Alignment:
| Q |
51 |
cataagcagttgtcatgattgctgattttatagcagc |
87 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
46215298 |
cataagctgttgtcatgattgctgattttatagcagc |
46215262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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