View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11810_low_13 (Length: 311)
Name: NF11810_low_13
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_low_13 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 12302369 - 12302075
Alignment:
| Q |
1 |
ttctttcagtaatgagactaggaatcacttcatcaatcaaaccattatctctagtatttgttgtgttattgaagagataggagaaatgattgactatatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12302369 |
ttctttcagtaatgagactaggaatcacttcatcaatcaaaccattatctctagtatttgttgtgttattgaagagagaggagaaatgattgactatatg |
12302270 |
T |
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| Q |
101 |
ctctgagatttccatattgtcagttaacactgtatcaccatgtttgatagaggtaatgaggtttgaggcatttttgattttggctaccctatggaaatat |
200 |
Q |
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| T |
12302269 |
ctctgagatttccatattgtcagttaacactgtatcaccatgtttgatagaggtaatgaggtttgaggcatttttgattttggctaccctatggaaatat |
12302170 |
T |
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| Q |
201 |
gctgtgtttcggtcaccttcactatgccattggacttttgatttttgttgccagaacattgcttcaatattcagtgcctgctccaaactaatttg |
295 |
Q |
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| T |
12302169 |
gctgtgtttcggtcaccttcactatgccactggacttttgatttttgttgccagaacatttcttcaatattcagtgcttgctccaaactaatttg |
12302075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 5152960 - 5153055
Alignment:
| Q |
159 |
aggtttgaggcatttttgattttggctaccctatggaaatatgctgtgtttcggtcaccttcactatgccattggacttttgatttttgttgccag |
254 |
Q |
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| T |
5152960 |
aggttagaggcgtttctgattttggttattctatgaaaataggctgtgtttcggtccccttgagcatgccactgaattttggatttttgttgccag |
5153055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 37574 - 37868
Alignment:
| Q |
1 |
ttctttcagtaatgagactaggaatcacttcatcaatcaaaccattatctctagtatttgttgtgttattgaagagataggagaaatgattgactatatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37574 |
ttctttcagtaatgagactaggaatcacttcatcaatcaaaccattatctctagtatttgttgtgttattgaagagagaggagaaatgattgactatatg |
37673 |
T |
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| Q |
101 |
ctctgagatttccatattgtcagttaacactgtatcaccatgtttgatagaggtaatgaggtttgaggcatttttgattttggctaccctatggaaatat |
200 |
Q |
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| T |
37674 |
ctctaagatttccatattgtcagttaacactgtatcaccatgtttaatagaggtaatgaggtttgaggcatttttgattttggctaccctatggaaatat |
37773 |
T |
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| Q |
201 |
gctgtgtttcggtcaccttcactatgccattggacttttgatttttgttgccagaacattgcttcaatattcagtgcctgctccaaactaatttg |
295 |
Q |
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| T |
37774 |
gctgtgtttcggtcaccttcactatgccactggacttttgatttttgttgccagaacatttcttcaatatttagtgcttgctccaaactaatttg |
37868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 238
Target Start/End: Complemental strand, 23490597 - 23490378
Alignment:
| Q |
19 |
taggaatcacttcatcaatcaaaccattatctctagtatttgttgtgttattgaagagataggagaaatgattgactatatgctctgagatttccatatt |
118 |
Q |
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|||||||||||||||| | ||| | |||||| |||||||||| |||| ||||| | | ||||| |||||||| |||||||| ||||| || || |
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| T |
23490597 |
taggaatcacttcatccactaaatcgttatctatagtatttgtattgttgttgaatatggaagagaagtgattgacaatatgctcagagatatctttagg |
23490498 |
T |
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| Q |
119 |
gtcagttaacactgtatcaccatgtttgatagaggtaatgaggtttgaggcatttttgattttggctaccctatggaaatatgctgtgtttcggtcacct |
218 |
Q |
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| T |
23490497 |
gtcagttaacacagtatcgccattggaaatggaggtaataaggttggaagcattttttatcttggctaccctatggaagtaggatgtattacggtcacct |
23490398 |
T |
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| Q |
219 |
tcactatgccattggacttt |
238 |
Q |
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| T |
23490397 |
tcactatgccatttgacttt |
23490378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 244
Target Start/End: Original strand, 22165006 - 22165117
Alignment:
| Q |
133 |
tatcaccatgtttgatagaggtaatgaggtttgaggcatttttgattttggctaccctatggaaatatgctgtgtttcggtcaccttcactatgccattg |
232 |
Q |
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|||||||| ||| ||||||||||| ||| ||||||| | || ||||||||| | ||||||||| | |||||||||| || ||||||| ||||||| |
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| T |
22165006 |
tatcaccacttttcatagaggtaatcaggcttgaggcttgttggattttggcaagtctatggaaaaaggctgtgtttctatctccttcacagtgccattt |
22165105 |
T |
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| Q |
233 |
gacttttgattt |
244 |
Q |
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|||||| ||||| |
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| T |
22165106 |
gactttggattt |
22165117 |
T |
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