View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11810_low_16 (Length: 286)

Name: NF11810_low_16
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11810_low_16
NF11810_low_16
[»] chr3 (29 HSPs)
chr3 (15-285)||(8471084-8471354)
chr3 (67-285)||(7587441-7587665)
chr3 (38-285)||(6839143-6839393)
chr3 (38-285)||(8569184-8569440)
chr3 (1-149)||(6794989-6795137)
chr3 (160-283)||(6916794-6916917)
chr3 (160-285)||(6168584-6168709)
chr3 (160-276)||(6899781-6899897)
chr3 (160-285)||(6480221-6480346)
chr3 (160-280)||(6735655-6735775)
chr3 (166-285)||(6946940-6947059)
chr3 (160-285)||(6449026-6449151)
chr3 (167-280)||(6554682-6554795)
chr3 (113-283)||(4389181-4389351)
chr3 (168-273)||(6722317-6722422)
chr3 (160-283)||(5298399-5298522)
chr3 (160-276)||(7749695-7749811)
chr3 (160-283)||(8589394-8589517)
chr3 (161-281)||(6520405-6520525)
chr3 (160-283)||(6265384-6265507)
chr3 (160-283)||(6591566-6591689)
chr3 (160-283)||(5267724-5267847)
chr3 (160-285)||(13270770-13270889)
chr3 (160-281)||(5280343-5280464)
chr3 (160-285)||(8454319-8454444)
chr3 (160-220)||(6141979-6142039)
chr3 (160-223)||(6244986-6245049)
chr3 (160-270)||(6882197-6882307)
chr3 (251-283)||(6142070-6142102)
[»] chr7 (1 HSPs)
chr7 (38-285)||(6573534-6573787)
[»] scaffold0425 (1 HSPs)
scaffold0425 (160-280)||(7721-7841)
[»] chr4 (1 HSPs)
chr4 (165-283)||(25242374-25242493)
[»] chr1 (1 HSPs)
chr1 (160-286)||(35140582-35140708)
[»] scaffold0958 (1 HSPs)
scaffold0958 (54-135)||(253-334)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 285
Target Start/End: Original strand, 8471084 - 8471354
Alignment:
Q  15 aatcaagagagcagcaaacgtgtcgtgttctttcagatttatcttgcacgcaatcaccctcaatttgtaagcaaaactcttgggactctgattttaacaa 114  Q
    |||||||| | ||||||| ||| ||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||  |||    
T  8471084 aatcaagataacagcaaatgtgacgtgttctttcagatatatcttgcacactatcaccctcaatttgtaagcaaaactcttgggactctgattttgccaa 8471183  T
Q  115 atcattgacaagatcgtgcatgactatactcttatgatcatctagtgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaac 214  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||    
T  8471184 atcattgacaagatcatgcatgactatactcttatgatcttctagtgattgttggagaaatgaaatggactcaagatcatcaaagaattcattacccaac 8471283  T
Q  215 tcttcttcacttttgtctcttcggcaacttttcagcaaaccttctgccatccaaagcttgatcaattcatc 285  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8471284 tcttcctcacttttgtctcttctgcaacatttcagcaaaccttctgccatccaaagcttgatcaattcatc 8471354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 67 - 285
Target Start/End: Original strand, 7587441 - 7587665
Alignment:
Q  67 atcaccctcaatttgtaagcaaaactcttgggactctgattttaacaaatcattgacaagatcgtgcatgactatactcttatgatca------tctagt 160  Q
    ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||||||||| ||||||| ||  ||||||| | ||      ||||||    
T  7587441 atcaccctcaatttgtaagcaaaactcatgggactctgattttgccaaatcattgacaagatcatgcatgaataatctcttatcaccaaaataatctagt 7587540  T
Q  161 gattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttctg 260  Q
    | |||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  7587541 ggttgttgaaaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctg 7587640  T
Q  261 ccatccaaagcttgatcaattcatc 285  Q
    |||||||||||||||||||||||||    
T  7587641 ccatccaaagcttgatcaattcatc 7587665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 285
Target Start/End: Complemental strand, 6839393 - 6839143
Alignment:
Q  38 cgtgttctttcagatttatcttgcacgcaatcaccctcaatttgtaagcaaaactcttgggactctgattttaacaaatcattgacaagatcgtgcatga 137  Q
    ||||||||||||| | |||||||||    ||||| |||||||||||||||||||||||||||||| ||||||  ||||||||| |||||||| |||||||    
T  6839393 cgtgttctttcagttatatcttgcagattatcactctcaatttgtaagcaaaactcttgggactcagattttgccaaatcattaacaagatcatgcatga 6839294  T
Q  138 ctatactcttatgatcatc-tagtg--attgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctct 234  Q
      |  ||  || || |||| ||||   |||||| ||||||||||||||||||||| | ||| | ||||||| | ||||| ||||||||||||||||||||    
T  6839293 gaaatcttgtacgaccatcatagtttaattgttcgaaaaatgaaatggactctaggtaatccatgaattcatttcccaattcttcttcacttttgtctct 6839194  T
Q  235 tcggcaacttttcagcaaaccttctgccatccaaagcttgatcaattcatc 285  Q
    || |||   ||||||||||||||||||||||||||||||||||||||||||    
T  6839193 tccgcagtatttcagcaaaccttctgccatccaaagcttgatcaattcatc 6839143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 38 - 285
Target Start/End: Complemental strand, 8569440 - 8569184
Alignment:
Q  38 cgtgttctttcagatttatcttgcacgcaatcaccctcaatttgtaagcaaaactcttgggactctgattttaacaaatcattgacaagatcgtgcatga 137  Q
    ||||| ||||||||| |||||||||  | |||||||||||||||||||||||| ||| | || |||||||||  ||||||||| |||||||| ||||| |    
T  8569440 cgtgtcctttcagatatatcttgcagcctatcaccctcaatttgtaagcaaaattctcgagattctgattttgccaaatcattaacaagatcatgcatta 8569341  T
Q  138 ctatactcttatgatcatctagt---------gattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcactttt 228  Q
    | |   |  || ||  ||  |||         ||||| |||||||||||||||||||| |||||||| ||||| ||| |||||| |||||||||||||||    
T  8569340 ccagtatggtacgactatacagtggatttatcgattgctggaaaaatgaaatggactccagatcatcgaagaactcattacccagctcttcttcactttt 8569241  T
Q  229 gtctcttcggcaacttttcagcaaaccttctgccatccaaagcttgatcaattcatc 285  Q
    |||||||  |||||  |||| ||||||||||||||||||||||||||||||||||||    
T  8569240 gtctcttttgcaacacttcaacaaaccttctgccatccaaagcttgatcaattcatc 8569184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 6795137 - 6794989
Alignment:
Q  1 cgcaccatcatcacaatcaagagagcagcaaacgtgtcgtgttctttcagatttatcttgcacgcaatcaccctcaatttgtaagcaaaactcttgggac 100  Q
    ||||||||| || ||||||||| |||| ||||  || ||||||||||||  | |||||||||  | ||||||||||||||||||||||||||| ||||||    
T  6795137 cgcaccatcttcccaatcaagatagcaacaaatatgacgtgttctttcaattatatcttgcagactatcaccctcaatttgtaagcaaaactcatgggac 6795038  T
Q  101 tctgattttaacaaatcattgacaagatcgtgcatgactatactcttat 149  Q
     ||||||||  |||||||||||||||||| ||||||||||||| |||||    
T  6795037 actgattttgccaaatcattgacaagatcatgcatgactatacacttat 6794989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 6916794 - 6916917
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    |||| ||||||||||||| || ||| |||||||||  || |||||| ||||||||||||||||||||||||||||||  ||||  |||||||||||||||    
T  6916794 tgatcgttggaaaaatgatattgacactagatcattgaaaaattcattacccaactcttcttcacttttgtctcttccacaacacttcagcaaaccttct 6916893  T
Q  260 gccatccaaagcttgatcaattca 283  Q
    ||||||||||||||||| ||||||    
T  6916894 gccatccaaagcttgattaattca 6916917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 6168584 - 6168709
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    |||||||||||||||||| || ||| |||||| ||||||||||||| ||||||||||||||||| |||||||| ||| |||||  || |||||||||| |    
T  6168584 tgattgttggaaaaatgacattgacactagatgatcaaagaattcattacccaactcttcttcatttttgtcttttccgcaacactttagcaaaccttgt 6168683  T
Q  260 gccatccaaagcttgatcaattcatc 285  Q
    ||||||||||||||||| ||| ||||    
T  6168684 gccatccaaagcttgattaatccatc 6168709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 6899781 - 6899897
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    |||||| ||||||||||  || ||| ||||||| |  ||||||||| |||||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  6899781 tgattgctggaaaaatgttattgacactagatcgttgaagaattcattacccaactcttcttcacttttgtctcttccgcaacacttcagcaaaccttct 6899880  T
Q  260 gccatccaaagcttgat 276  Q
    |||||||||||||||||    
T  6899881 gccatccaaagcttgat 6899897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 285
Target Start/End: Complemental strand, 6480346 - 6480221
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    ||||||||||||||||||||| ||||| |||||| | || | |||| |||| ||||||||||||||||||| |  || |||||  |||| ||||||||||    
T  6480346 tgattgttggaaaaatgaaattgactcaagatcaccgaaaatttcattaccaaactcttcttcacttttgtatgatccgcaacacttcaacaaaccttct 6480247  T
Q  260 gccatccaaagcttgatcaattcatc 285  Q
    ||||||||||||||||||||||||||    
T  6480246 gccatccaaagcttgatcaattcatc 6480221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 6735655 - 6735775
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    ||||||||||||||||||||| ||||| |||||| | || | |||| | || |||||||||||||||||||||  || |||||  |||||||||||||||    
T  6735655 tgattgttggaaaaatgaaattgactcaagatcaccgaaaatttcattgccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttct 6735754  T
Q  260 gccatccaaagcttgatcaat 280  Q
    |||||||||||||||||||||    
T  6735755 gccatccaaagcttgatcaat 6735775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 166 - 285
Target Start/End: Original strand, 6946940 - 6947059
Alignment:
Q  166 ttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttctgccatc 265  Q
    ||||||||| ||||| ||||| ||||||   || | |||| |||| ||||||||||||||||||||||||| |||||  |||| ||||||||||||||||    
T  6946940 ttggaaaaacgaaattgactcaagatcactgaaaatttcattacctaactcttcttcacttttgtctcttctgcaacacttcaacaaaccttctgccatc 6947039  T
Q  266 caaagcttgatcaattcatc 285  Q
    ||||||||||||||||||||    
T  6947040 caaagcttgatcaattcatc 6947059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 160 - 285
Target Start/End: Complemental strand, 6449151 - 6449026
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    ||||||||||||||||||||| ||||| ||||||   || | |||| |||| |||||||||||||||||||||  || |||||  |||| || |||||||    
T  6449151 tgattgttggaaaaatgaaattgactcaagatcacagaaaatttcattaccaaactcttcttcacttttgtctgatccgcaacacttcaacataccttct 6449052  T
Q  260 gccatccaaagcttgatcaattcatc 285  Q
    ||||||||||||||||||||||||||    
T  6449051 gccatccaaagcttgatcaattcatc 6449026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 6554795 - 6554682
Alignment:
Q  167 tggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttctgccatcc 266  Q
    |||||||||||||| ||||| |||||| | || | |||| |||| |||||||||||||||||||||  || |||||  ||||||||||||||||||||||    
T  6554795 tggaaaaatgaaattgactcaagatcaccgaaaatttcattaccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttctgccatcc 6554696  T
Q  267 aaagcttgatcaat 280  Q
    ||||||||||||||    
T  6554695 aaagcttgatcaat 6554682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 113 - 283
Target Start/End: Complemental strand, 4389351 - 4389181
Alignment:
Q  113 aaatcattgacaagatcgtgcatgactatactcttatgatcatctagtgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtaccca 212  Q
    ||||| |||| ||||| |||||| || | || |||||  |||| || |||||  |||||||||||||| || ||||||||| |||| || ||| ||||||    
T  4389351 aaatcgttgataagattgtgcattacaaaacgcttatcgtcatgtattgatttctggaaaaatgaaattgattctagatcaacaaataactcattaccca 4389252  T
Q  213 actcttcttcacttttgtctcttcggcaacttttcagcaaaccttctgccatccaaagcttgatcaattca 283  Q
    ||||||||||||||||||| |||| |||||  |||| |||||| || || |||||||||||||| ||||||    
T  4389251 actcttcttcacttttgtcacttccgcaacacttcaacaaaccatccgctatccaaagcttgattaattca 4389181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 273
Target Start/End: Complemental strand, 6722422 - 6722317
Alignment:
Q  168 ggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttctgccatcca 267  Q
    |||||||||| || ||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||| |||||  |||| |||| |||||| ||||||    
T  6722422 ggaaaaatgatattgacactagatgatcaaagaattcattacccaactcttgttcacttttgtctcttccgcaacacttcaacaaatcttctgtcatcca 6722323  T
Q  268 aagctt 273  Q
    ||||||    
T  6722322 aagctt 6722317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 5298399 - 5298522
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    |||| |||| ||||||||||  || |||||||| |||||||||||| ||||||||||||||||| |||| ||  ||| ||| |  |||| ||||||||||    
T  5298399 tgatcgttgaaaaaatgaaactgattctagatcgtcaaagaattcattacccaactcttcttcagttttatcaattctgcagcacttcaacaaaccttct 5298498  T
Q  260 gccatccaaagcttgatcaattca 283  Q
    ||||||||||||||||| ||||||    
T  5298499 gccatccaaagcttgattaattca 5298522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 7749695 - 7749811
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    ||||||||||||||| || || ||| |||||| ||  ||||||||| ||||||||| ||||||| ||||||||||||  ||||  || ||||| ||||||    
T  7749695 tgattgttggaaaaacgatattgacactagataattgaagaattcattacccaactgttcttcagttttgtctcttccccaacactttagcaagccttct 7749794  T
Q  260 gccatccaaagcttgat 276  Q
    |||||||||||||||||    
T  7749795 gccatccaaagcttgat 7749811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 8589394 - 8589517
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    |||| |||||||||||||||| ||||| |||||| | || | |||| |||| ||||||||||||||||||| |  || |||||  ||||  |||||||||    
T  8589394 tgatcgttggaaaaatgaaattgactcaagatcaccgaaaatttcattacctaactcttcttcacttttgtgtgatccgcaacacttcaataaaccttct 8589493  T
Q  260 gccatccaaagcttgatcaattca 283  Q
    |||||||| |||||||||||||||    
T  8589494 gccatccagagcttgatcaattca 8589517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 6520525 - 6520405
Alignment:
Q  161 gattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttctg 260  Q
    |||| ||||||||||||||| ||||| |||||| | || | |||| |||| || |||||||||||||||||   || | |||  |||| |||||||||||    
T  6520525 gatttttggaaaaatgaaattgactcaagatcaccgaaaatttcattaccaaaatcttcttcacttttgtccaatccgtaacacttcaacaaaccttctg 6520426  T
Q  261 ccatccaaagcttgatcaatt 281  Q
    |||||||||||||||||||||    
T  6520425 ccatccaaagcttgatcaatt 6520405  T

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Target: chr3; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 6265384 - 6265507
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    |||||||||||||||||| || ||| |||| | ||| ||||||||| | || ||||||||||  ||||||| ||||| |||||  || | ||||||||||    
T  6265384 tgattgttggaaaaatgacattgacactagttgatcgaagaattcattccctaactcttctttgcttttgtttcttccgcaacaatttaacaaaccttct 6265483  T
Q  260 gccatccaaagcttgatcaattca 283  Q
    |||||||||||| |||| ||||||    
T  6265484 gccatccaaagcctgattaattca 6265507  T

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Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 160 - 283
Target Start/End: Complemental strand, 6591689 - 6591566
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    ||||||||||||||| || || ||| |||||| ||  ||||||||| | ||||||| |||||||||||||| ||||   ||||  || ||||| ||||||    
T  6591689 tgattgttggaaaaacgatattgacactagatgattgaagaattcattgcccaacttttcttcacttttgtgtctttcccaacactttagcaagccttct 6591590  T
Q  260 gccatccaaagcttgatcaattca 283  Q
    ||||||||||||||||| ||||||    
T  6591589 gccatccaaagcttgattaattca 6591566  T

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Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 160 - 283
Target Start/End: Original strand, 5267724 - 5267847
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    |||||| |||||||||||||| ||| |||||||||| || |||| | |||||| ||||||||| ||||| ||| ||| ||  |  ||||||||||| ||     
T  5267724 tgattgctggaaaaatgaaattgacactagatcatctaataattgattacccagctcttcttcgcttttttctgttccgcggcacttcagcaaaccgtcg 5267823  T
Q  260 gccatccaaagcttgatcaattca 283  Q
    ||||||||||| ||||| ||||||    
T  5267824 gccatccaaagtttgattaattca 5267847  T

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Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 285
Target Start/End: Complemental strand, 13270889 - 13270770
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    ||||||||||||||| ||||| ||| |||||||||  ||||||| | ||||||||||||||||| ||||| || |||     ||||  |||||||||| |    
T  13270889 tgattgttggaaaaacgaaattgacactagatcattgaagaatttattacccaactcttcttcatttttggctattc----ccttt--agcaaaccttgt 13270796  T
Q  260 gccatccaaagcttgatcaattcatc 285  Q
    ||||||||||||||||| ||| ||||    
T  13270795 gccatccaaagcttgattaatccatc 13270770  T

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Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 5280343 - 5280464
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    ||||||||| | ||| ||||| ||||| |||| |||||| ||||||  ||||||||||| |||||| || |||  ||   ||| ||||||||| || |||    
T  5280343 tgattgttgtataaacgaaattgactcaagataatcaaaaaattcatcacccaactctttttcactcttttctgctctaaaacatttcagcaacccatct 5280442  T
Q  260 gccatccaaagcttgatcaatt 281  Q
    ||||||||||||||||| ||||    
T  5280443 gccatccaaagcttgattaatt 5280464  T

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Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 8454319 - 8454444
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    ||||||||||||||| ||||| ||| | |||||| | ||   |||| |||| ||||||||||||||| |||    || |||||  |||| ||||||||||    
T  8454319 tgattgttggaaaaaagaaattgacacaagatcagcgaaactttcattaccaaactcttcttcacttctgttagatccgcaacacttcaacaaaccttct 8454418  T
Q  260 gccatccaaagcttgatcaattcatc 285  Q
    |||||||||||| |||||| ||||||    
T  8454419 gccatccaaagcatgatcagttcatc 8454444  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 220
Target Start/End: Original strand, 6141979 - 6142039
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttct 220  Q
    |||||||||||||||||| || ||| |||||| ||| ||||||||| |||| |||||||||    
T  6141979 tgattgttggaaaaatgatattgacactagataatcgaagaattcattacctaactcttct 6142039  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 6244986 - 6245049
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttca 223  Q
    ||||||||||||||| || || ||| |||||||||  ||||||| | |||||||||||||||||    
T  6244986 tgattgttggaaaaacgacattgacactagatcattgaagaatttattacccaactcttcttca 6245049  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 270
Target Start/End: Original strand, 6882197 - 6882307
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    ||||||||||||||| || || ||| | | || ||  ||||||||| |||| ||||||| ||| ||||||||||||  |  ||  |||| ||||||||||    
T  6882197 tgattgttggaaaaaagatattgacaccaaatgattgaagaattcattacctaactcttgttcgcttttgtctcttttgtgacacttcaacaaaccttct 6882296  T
Q  260 gccatccaaag 270  Q
    |||||||||||    
T  6882297 gccatccaaag 6882307  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Original strand, 6142070 - 6142102
Alignment:
Q  251 aaaccttctgccatccaaagcttgatcaattca 283  Q
    |||||||||||||||||||||||||| ||||||    
T  6142070 aaaccttctgccatccaaagcttgattaattca 6142102  T

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Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 285
Target Start/End: Complemental strand, 6573787 - 6573534
Alignment:
Q  38 cgtgttctttcagatttatcttgcacgcaatcaccctcaatttgtaagcaaaactcttgggactctgattttaacaaatcattgacaagatcgtgcatga 137  Q
    ||||| ||||||||| |||||||||| | |||||||||||||||||||||||| | |||||||||||||||    |||||||| |||||||| ||||||     
T  6573787 cgtgtcctttcagatatatcttgcaccctatcaccctcaatttgtaagcaaaatttttgggactctgatttagctaaatcatttacaagatcatgcatgc 6573688  T
Q  138 ctatactcttatgatcatctag------tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtc 231  Q
     ||  | | ||||| ||  ||       |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||    
T  6573687 ataatcccatatgaccaaatatcgactctgattgttggaaaaatgaaatggactctagatcatccaagaattcattacccaactcttgttcacttttgtc 6573588  T
Q  232 tcttcggcaacttttcagcaaaccttctgccatccaaagcttgatcaattcatc 285  Q
    ||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||    
T  6573587 tcttccgcaacatttcagcaaaccttcagccatccaaaggttgatcaattcatc 6573534  T

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Target: scaffold0425 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 280
Target Start/End: Complemental strand, 7841 - 7721
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    ||||||||||||||||||||| ||||| |||||| | || | |||| | || |||||||||||||||||||||  || |||||  |||||||||||||||    
T  7841 tgattgttggaaaaatgaaattgactcaagatcaccgaaaatttcattgccaaactcttcttcacttttgtctgatccgcaacacttcagcaaaccttct 7742  T
Q  260 gccatccaaagcttgatcaat 280  Q
     ||||||||||||||||||||    
T  7741 cccatccaaagcttgatcaat 7721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 283
Target Start/End: Complemental strand, 25242493 - 25242374
Alignment:
Q  165 gttggaaaaatgaaatggactctag-atcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttctgcca 263  Q
    |||||||||||||||| |||||||  |||||| || || ||  |||||||||||||||||||||||| | |||  ||||  |||||||| |||| ||| |    
T  25242493 gttggaaaaatgaaatcgactctattatcatcgaataactctctacccaactcttcttcacttttgtttgttctacaacacttcagcaagccttatgcta 25242394  T
Q  264 tccaaagcttgatcaattca 283  Q
    ||||||||||||| ||||||    
T  25242393 tccaaagcttgattaattca 25242374  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 160 - 286
Target Start/End: Complemental strand, 35140708 - 35140582
Alignment:
Q  160 tgattgttggaaaaatgaaatggactctagatcatcaaagaattcagtacccaactcttcttcacttttgtctcttcggcaacttttcagcaaaccttct 259  Q
    ||||| ||||||||| || || ||| |||||||||  ||||||| | ||||||||||||||||| ||||| || ||   ||||  || ||||||||||||    
T  35140708 tgatttttggaaaaacgacattgacactagatcattgaagaatttattacccaactcttcttcatttttggctatttcccaaccctttagcaaaccttct 35140609  T
Q  260 gccatccaaagcttgatcaattcatca 286  Q
    | ||||||||||||||| ||| |||||    
T  35140608 gtcatccaaagcttgattaatccatca 35140582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 334 - 253
Alignment:
Q  54 tatcttgcacgcaatcaccctcaatttgtaagcaaaactcttgggactctgattttaacaaatcattgacaagatcgtgcat 135  Q
    |||| ||||| | |||||||||||||||||||||||| | | | ||||||||||||  ||||||||| |||||||| |||||    
T  334 tatcgtgcaccctatcaccctcaatttgtaagcaaaattgtcgagactctgattttgccaaatcattaacaagatcatgcat 253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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