View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11810_low_2 (Length: 740)
Name: NF11810_low_2
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 703; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 703; E-Value: 0
Query Start/End: Original strand, 17 - 727
Target Start/End: Complemental strand, 55173632 - 55172922
Alignment:
| Q |
17 |
catcatcttggcacaaattgaaaatgagtacaaccatattcaacttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173632 |
catcatcttggcacaaattgaaaatgagtacaaccatattcaacttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtg |
55173533 |
T |
|
| Q |
117 |
gccttggacataggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacag |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173532 |
gccttggacatcggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagtaattaattttaggcataaaacaaagtgaggacag |
55173433 |
T |
|
| Q |
217 |
tcatgatgtgatcatgagtttaataattttatttggcagatcaatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccataca |
316 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173432 |
tcatgatgtgatcatgagtttaataattttatttggcagatcaatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccataca |
55173333 |
T |
|
| Q |
317 |
agccttccctatggactgaaaattggaccgctcagtacagagtatttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173332 |
agccttccctatggactgaaaattggaccgctcagtacagagtatttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccg |
55173233 |
T |
|
| Q |
417 |
attcttctccaaaaatggaaatctggtcaactactatatggtaattgctaatattatgtactaatgtagcaaactaactcaattgaatgtgaaattaact |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173232 |
attcttctccaaaaatggaaatctggtcaactactatatggtaattgctaatattatgtactaatgtagcaaactaactcaattgaatgtgaaattaact |
55173133 |
T |
|
| Q |
517 |
atgaatgaattgcagtaccatggtggaacaaactttggaagaacaacctctgccttcacaacaacccgttattacgatgaggcacctcttgatgaatacg |
616 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173132 |
atgaatgaattgcagtaccatggtggaacaaactttggaagaacaacctctgcctttacaacaacccgttattacgatgaggcacctcttgatgaatacg |
55173033 |
T |
|
| Q |
617 |
gtatggagaggcagccaaaatggagccaccttagggacgcccacaaggctttgctcctttgcagaaaggctattctcggtggtgttcccactgtccaaaa |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55173032 |
gtatggagaggcagccaaaatggagccaccttagggacgcccacaaggctttgctcctttgcagaaaggctattctcggtggtgttcccactgtccaaaa |
55172933 |
T |
|
| Q |
717 |
gctcaacgact |
727 |
Q |
| |
|
||||||||||| |
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| T |
55172932 |
gctcaacgact |
55172922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 249 - 353
Target Start/End: Original strand, 27721586 - 27721690
Alignment:
| Q |
249 |
ttggcagatcaatgcatgcaatggaagacattgtggtgataccttctcaggaccaaacaaaccatacaagccttccctatggactgaaaattggaccgct |
348 |
Q |
| |
|
||||||||| ||||||||||||||||| || |||||||||||||| |||| ||||||||||||||||| |||| | ||||||||||||| ||||| ||| |
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| T |
27721586 |
ttggcagattaatgcatgcaatggaaggcactgtggtgatacctttacaggtccaaacaaaccatacaaacctttcatatggactgaaaactggactgct |
27721685 |
T |
|
| Q |
349 |
cagta |
353 |
Q |
| |
|
||||| |
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|
| T |
27721686 |
cagta |
27721690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 33 - 182
Target Start/End: Original strand, 27721147 - 27721296
Alignment:
| Q |
33 |
attgaaaatgagtacaaccatattcaacttgcttatgaagagaagggagatagttatgttcagtgggccgcaaatatggcagtggccttggacataggag |
132 |
Q |
| |
|
||||| |||||||||||||| || |||||||||||||||| | ||||||| ||||||||||||||| ||||| |||||||| | | | | |||| |
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| T |
27721147 |
attgagaatgagtacaaccacatccaacttgcttatgaagctgatggagataattatgttcagtgggctgcaaaaatggcagtttcactatataatggag |
27721246 |
T |
|
| Q |
133 |
ttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
182 |
Q |
| |
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|||| ||| ||||||||||||||||||||||||| ||||| || |||||| |
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| T |
27721247 |
ttccatgggtcatgtgcaagcagaaggatgctcctgatccagttgtaagt |
27721296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 355 - 460
Target Start/End: Original strand, 27721910 - 27722015
Alignment:
| Q |
355 |
agagtatttggtgatccagtatcacagagatctgctgaagatattgccttctcagttgcccgattcttctccaaaaatggaaatctggtcaactactata |
454 |
Q |
| |
|
||||||||||| |||||| ||| || |||||||| ||||| ||||||||||||||||| || |||||||| || ||||| | | ||||||||||||| |
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| T |
27721910 |
agagtatttggagatccaccatctcaaagatctgcagaagacattgccttctcagttgctcgcttcttctctaagcatggatctttagtcaactactata |
27722009 |
T |
|
| Q |
455 |
tggtaa |
460 |
Q |
| |
|
|||||| |
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|
| T |
27722010 |
tggtaa |
27722015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 611
Target Start/End: Original strand, 27722106 - 27722179
Alignment:
| Q |
538 |
ggtggaacaaactttggaagaacaacctctgccttcacaacaacccgttattacgatgaggcacctcttgatga |
611 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||| || || ||||||||||| |
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| T |
27722106 |
ggtggaacaaattttggtagaacaacctcagcctttacaacaacacgttactacgacgaagctcctcttgatga |
27722179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 42989343 - 42989290
Alignment:
| Q |
129 |
ggagttccgtggatcatgtgcaagcagaaggatgctcccgatcccgtcgtaagt |
182 |
Q |
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|||||||||||||||||||||||||| | |||||||| ||||| || |||||| |
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| T |
42989343 |
ggagttccgtggatcatgtgcaagcaagatgatgctcctgatcctgttgtaagt |
42989290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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