View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11810_low_22 (Length: 234)
Name: NF11810_low_22
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 32580862 - 32581061
Alignment:
| Q |
18 |
cagagagagcaacaagatcaacaatgtcaagtccttgaagtttgaatttagttaggattgtctggaatgtgttgtttggggctggaatgttgttgttgga |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32580862 |
cagaaagagcaacaagatcaacaatgtcaagtccttgaagtttgaatttagttaggattgtctggaatgtgttgtttggggctggaatgttgttgttgga |
32580961 |
T |
|
| Q |
118 |
accacttaaacttgcacctagtgagtctcttctgcctagagtcacttcccagtttggtccaccagcctacacataaaagggaatagtaatgtaagaatgt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32580962 |
accacttaaacttgcacctagtgagtctcttctgcctagaggcacttcccagtttggtccaccagcctacacataaaagggaatagtaatgtaagaatgt |
32581061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 8079354 - 8079237
Alignment:
| Q |
18 |
cagagagagcaacaagatcaacaatgtcaagtccttgaagtttgaatttagttaggattgtctggaatgtgttgtttggggctggaatgttgttgttgga |
117 |
Q |
| |
|
|||| |||||||| ||||||||||||| |||||| | ||| |||||||| |||| ||| || |||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
8079354 |
cagatagagcaactagatcaacaatgttaagtcccttaagcttgaattttgttaagatggtttggaatgtattgtttggggcaggaatgttgttgtttga |
8079255 |
T |
|
| Q |
118 |
accacttaaacttgcacc |
135 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
8079254 |
gccacttatgcttgcacc |
8079237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University