View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11810_low_23 (Length: 227)
Name: NF11810_low_23
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_low_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 295402 - 295171
Alignment:
| Q |
1 |
aataaaacaggaagacgtggcaagagaggtgcctatgatgatgttactatgttaattgtagtttgaacttggaacgaatgaatgaatgagcatcatatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
295402 |
aataaaacaggaagacgtggcaagagaggtgcctatgatgatgttactatgttaattgtagtttgaacttggaacgaatgaatgaatgagcatcatatca |
295303 |
T |
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| Q |
101 |
tatcata-----acaatatggcttctttgctccatccaactccaactgttaccactatacttaagcatcgaacatcaacaatctgtttcttctgtccctt |
195 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
295302 |
tatcatatcataacaatatggcttctttgctccatccaactccaactgttaccactatacttaagcatcgaacatcaacaatctgtttcttctgtccctt |
295203 |
T |
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| Q |
196 |
aaaacctacaaatgtttctttcttaactaaca |
227 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
295202 |
aaaacctacaaatgtttctttcttaactaaca |
295171 |
T |
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