View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11810_low_5 (Length: 581)
Name: NF11810_low_5
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 17 - 552
Target Start/End: Complemental strand, 39133443 - 39132908
Alignment:
| Q |
17 |
ttaataatgttcacattggtttcagaacttacagaagcagaagtacaaaacacaaatgcaacttaacatgaatgaagtaaaattaccaggtggtcattac |
116 |
Q |
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| T |
39133443 |
ttaataatgttcacattggtttcagaacttacagaagcagaagtacaaaacacaaatgcaacttaacatgaatgaagtaaaattaccaggtggtcattac |
39133344 |
T |
|
| Q |
117 |
cttgcactgctgcaagaaaataataagcgtttccacatcaatcatcatcaatattttcatcatccttcatgtacttctcttgcactgctgcaactgtaga |
216 |
Q |
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| T |
39133343 |
cttgcactgctgcaagaaaataataagcgtttccacatcaatcatcatcaatattttcatcatccttcatgtacttctcttgcactgctgcaactgtaga |
39133244 |
T |
|
| Q |
217 |
tagctgagttaagggaagctcatcattattaaaaattaggtccgggaataagcaacatagtggagaaacttgtgatagtcggaacactaattaaccctat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39133243 |
tagctgagttaagggaagctcatcattattaaaaattaggtccgggaataagcaacatagtggagaaacttgtgatagccggaacactaattaaccctat |
39133144 |
T |
|
| Q |
317 |
agcagtatcaactccattgctccaaaatgtaatctaaatattattgttatacacaaaggactacataaaaacaagggcaaaaagtatctgcctacctgaa |
416 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39133143 |
agcattatcggctccattgctccaaaatgtaatctaaatattattgttatacacaaaggactacataaaaacaagggcaaaaagtacctgcctacctgaa |
39133044 |
T |
|
| Q |
417 |
ctggtcacatagttcattattaaattgaaaagatgcttagagagtaaatactaaatagcactacacaactgcatagagccatgccttctttcaaatagga |
516 |
Q |
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| T |
39133043 |
ctagtcacatagttcattattaaattgaaaagatgcttagagagtaaatactaaatagcactacacaactgcatagagccatgccttctttcaaatagga |
39132944 |
T |
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| Q |
517 |
ctaataaataataatgacattcaaacattggttggg |
552 |
Q |
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| T |
39132943 |
ctaataaataataatggcattcaaacattggttggg |
39132908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 60 - 259
Target Start/End: Complemental strand, 26059542 - 26059346
Alignment:
| Q |
60 |
tacaaaacacaaatgcaacttaacatgaa-tgaagtaaaattaccaggtggtcattaccttgcactgctgcaagaaaataataagcgtttccacatcaat |
158 |
Q |
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||||||||||||| ||||||||| | ||| |||||||||||||||| |||||| || || ||||||||||| | |||||||||||| ||||||||||||| |
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| T |
26059542 |
tacaaaacacaaaagcaacttaataagaaatgaagtaaaattaccaagtggtcgttcccctgcactgctgcca-aaaataataagcatttccacatcaat |
26059444 |
T |
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| Q |
159 |
catcatcaatattttcatcatccttcatgtacttctcttgcactgctgcaactgtagatagctgagttaagggaagctcatcattattaaaaattaggtc |
258 |
Q |
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||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||| ||||||||||||||| |||||| || |||||||||| ||| |
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| T |
26059443 |
catca---atattttcatcatcctttatgtatttctcttgcacttctgcaactgtagattgctgagttaagggaaactcatcgtttttaaaaattatgtc |
26059347 |
T |
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