View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11810_low_6 (Length: 579)
Name: NF11810_low_6
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 65 - 250
Target Start/End: Original strand, 14020035 - 14020217
Alignment:
| Q |
65 |
aaaattttatgttaacttttaacaagattcttcaattggcaaaaaacaaaccttcttttttgtttgattctttatatttatgtagacgattttgaaaaat |
164 |
Q |
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| T |
14020035 |
aaaattttttgttaacttttaacgagattcttcaattggcaaaagacaaaccattttttttg-tcgattctctacacttatggagacgattttg-aaaat |
14020132 |
T |
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| Q |
165 |
tccatgattcacgaataatgccttgaactcacctcattgctagcttacaagtggatcttttggctgtctttctcaattctcatgtt |
250 |
Q |
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| T |
14020133 |
tccatggttcacgaacaatgcctt-tattgacctccttgctggcttagaagtgggtctcttggctgtctttgtcgattctcatgtt |
14020217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 13476071 - 13475968
Alignment:
| Q |
58 |
tttttataaaattttatgttaacttttaacaagattcttcaattggcaaaaaacaaaccttcttttttgtttgattctttatatttatgtagacgatttt |
157 |
Q |
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| T |
13476071 |
tttttagaaaattttctgttaacttttaacgggattcttcaattggcaaacgacaaaccttcttttttg-ttgattctttatacctatgcagacgatttt |
13475973 |
T |
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| Q |
158 |
gaaaa |
162 |
Q |
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||||| |
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| T |
13475972 |
gaaaa |
13475968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 352
Target Start/End: Original strand, 13943825 - 13943892
Alignment:
| Q |
286 |
gtaaaagactttagagtctttcataaaaaacaaaacatggagac-tggaaaattatcacatatttttt |
352 |
Q |
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| T |
13943825 |
gtaaaagactttaaagtctttcataaataacaaaacatggagacttgaaaaattatcatgtatttttt |
13943892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 14108345 - 14108413
Alignment:
| Q |
501 |
ctttcctcacctccttgctggcttagaaatggatcttttgcatgtctttatcgattctcatgttgatgt |
569 |
Q |
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| T |
14108345 |
ctttactcacctccttgatggcttagaagtgggtctttttactgcctttatcgattctcatgttgatgt |
14108413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 509 - 565
Target Start/End: Original strand, 14020162 - 14020218
Alignment:
| Q |
509 |
acctccttgctggcttagaaatggatcttttgcatgtctttatcgattctcatgttg |
565 |
Q |
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| T |
14020162 |
acctccttgctggcttagaagtgggtctcttggctgtctttgtcgattctcatgttg |
14020218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 14107155 - 14107195
Alignment:
| Q |
290 |
aagactttagagtctttcataaaaaacaaaacatggagact |
330 |
Q |
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| T |
14107155 |
aagactttatagtctttcataaaaaacaaaacaaggagact |
14107195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 14113315 - 14113347
Alignment:
| Q |
290 |
aagactttagagtctttcataaaaaacaaaaca |
322 |
Q |
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| T |
14113315 |
aagactttagagtctttcataaaaaacaaaaca |
14113347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 58 - 161
Target Start/End: Original strand, 279083 - 279185
Alignment:
| Q |
58 |
tttttataaaattttatgttaacttttaacaagattcttcaattggcaaaaaacaaaccttcttttttgtttgattctttatatttatgtagacgatttt |
157 |
Q |
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| T |
279083 |
tttttagaaaattttctgttaacttttaacaggattcttgaattgggaaaagacaaaccttcttctttg-ttgtttctttagatttttgcaaacgatttt |
279181 |
T |
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| Q |
158 |
gaaa |
161 |
Q |
| |
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|||| |
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|
| T |
279182 |
gaaa |
279185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 636769 - 636667
Alignment:
| Q |
58 |
tttttataaaattttatgttaacttttaacaagattcttcaattggcaaaaaacaaaccttcttttttgtttgattctttatatttatgtagacgatttt |
157 |
Q |
| |
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|||||| |||||||| ||||||||||||||| ||||||| |||||| |||| |||||||||||| |||| ||| ||||||| |||| || | |||||||| |
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| T |
636769 |
tttttagaaaattttctgttaacttttaacaggattcttgaattgggaaaagacaaaccttcttctttg-ttgtttctttagatttttgcaaacgatttt |
636671 |
T |
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| Q |
158 |
gaaa |
161 |
Q |
| |
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|||| |
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| T |
636670 |
gaaa |
636667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 58 - 161
Target Start/End: Complemental strand, 822572 - 822470
Alignment:
| Q |
58 |
tttttataaaattttatgttaacttttaacaagattcttcaattggcaaaaaacaaaccttcttttttgtttgattctttatatttatgtagacgatttt |
157 |
Q |
| |
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|||||| |||||||| ||||||||||||||| ||||||| |||||| |||| |||||||||||| |||| ||| ||||||| |||| || | |||||||| |
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| T |
822572 |
tttttagaaaattttctgttaacttttaacaggattcttgaattgggaaaagacaaaccttcttctttg-ttgtttctttagatttttgcaaacgatttt |
822474 |
T |
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| Q |
158 |
gaaa |
161 |
Q |
| |
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|||| |
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| T |
822473 |
gaaa |
822470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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