View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11810_low_7 (Length: 503)

Name: NF11810_low_7
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11810_low_7
NF11810_low_7
[»] chr4 (2 HSPs)
chr4 (1-498)||(54349960-54350462)
chr4 (431-489)||(39907668-39907726)
[»] chr1 (1 HSPs)
chr1 (419-496)||(18651565-18651642)
[»] chr6 (2 HSPs)
chr6 (435-489)||(1317162-1317216)
chr6 (261-498)||(6120326-6120559)
[»] chr8 (1 HSPs)
chr8 (435-489)||(5527068-5527122)
[»] chr7 (2 HSPs)
chr7 (433-498)||(26012245-26012309)
chr7 (448-496)||(18485255-18485303)
[»] scaffold1482 (1 HSPs)
scaffold1482 (434-498)||(1686-1750)
[»] chr3 (2 HSPs)
chr3 (324-385)||(25070911-25070972)
chr3 (435-491)||(5531150-5531206)


Alignment Details
Target: chr4 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 54350462 - 54349960
Alignment:
Q  1 tttcagctcatatttttgttctttacaccgactgtttcatacatatac--ttgggtt-agtctcaca--gagttattattattgtgaacaaattccatta 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||  |||||||||||||||||||||||||||||||    
T  54350462 tttcagctcatatttttgttctttacaccgactgtttcatacatatacacttgggtttagtctcacaaagagttattattattgtgaacaaattccatta 54350363  T
Q  96 catctctttgactgctagtaaattaacgagcaaataaaaatgcaaaattgaccagacaaatttcaattgttattcagtagtatatttgttttttaaaaat 195  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54350362 catctctttgactgctagtaaattaacgaacaaataaaaatgcaaaattgaccagacaaatttcaattgttattcagtagtatatttgttttttaaaaat 54350263  T
Q  196 ctcgtatacctacctcatttattacctaaatattatacttgttttggactaggcaaaaaccgagtccaccataaattagggtccaattactcaaattccc 295  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54350262 ctcgtatacctacctcatttattacctaaatattatacctgttttggactaggcgaaaaccgagtccaccataaattagggtccaattactcaaattccc 54350163  T
Q  296 aacaagcaaagccaacccttagtattgaatcctctcctaccaataatagtctataactgctaccaatggttggtaacgctcattcaatctcagtcataat 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54350162 aacaagcaaagccaacccttagtattgaatcctctcctaccaataatagtctataactgctaccaatggttggtaacgctcattcaatctcagtcataat 54350063  T
Q  396 ggacacctttcatcacggccgccccatgactaaacaacggtctcctcgaccctatataaagagctcttgacaagctcataatgtatgtatctctctctgc 495  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| | |||    
T  54350062 ggacacctttcatcacggccgccccatgactatacaacggtctcctcgactctatataaagagctgttgacaagctcataatatatgtatctctttatgc 54349963  T
Q  496 ttc 498  Q
    |||    
T  54349962 ttc 54349960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 431 - 489
Target Start/End: Original strand, 39907668 - 39907726
Alignment:
Q  431 aacggtctcctcgaccctatataaagagctcttgacaagctcataatgtatgtatctct 489  Q
    ||||||||  |||||||||||| || |||||| ||||| |||| |||||||||||||||    
T  39907668 aacggtcttgtcgaccctatattaaaagctctggacaaactcacaatgtatgtatctct 39907726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 419 - 496
Target Start/End: Original strand, 18651565 - 18651642
Alignment:
Q  419 ccatgactaaacaacggtctcctcgaccctatataaagagctcttgacaagctcataatgtatgtatctctctctgct 496  Q
    ||||||| | |||||||||||||  || |||||||| ||||||||||||||||||||| |||||||||||||| ||||    
T  18651565 ccatgaccacacaacggtctcctaaactctatataatgagctcttgacaagctcataaggtatgtatctctctatgct 18651642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 435 - 489
Target Start/End: Original strand, 1317162 - 1317216
Alignment:
Q  435 gtctcctcgaccctatataaagagctcttgacaagctcataatgtatgtatctct 489  Q
    |||||||||| ||||||||| |  |||||||||||||||||||||||||||||||    
T  1317162 gtctcctcgatcctatataatggactcttgacaagctcataatgtatgtatctct 1317216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 261 - 498
Target Start/End: Complemental strand, 6120559 - 6120326
Alignment:
Q  261 ccaccataaattagggtccaattactcaaattcccaacaagcaaagccaacccttagtattgaatcctctcctaccaataatagtctataactgctacca 360  Q
    |||||| ||||||||| ||| |||  ||||  ||||||||| |||||| ||||| |   | | ||||||| | ||||| |||||  |||||| ||||| |    
T  6120559 ccaccacaaattagggcccacttatccaaaggcccaacaagaaaagcccaccctcaacgtaggatcctcttcaaccaacaatagcttataacggctacta 6120460  T
Q  361 atggttggtaacgctcattcaatctcagtcataatggacacctttcatcacggccgccccatgactaaacaacggtctcctcgaccctatataaagagct 460  Q
    || ||| ||||||  ||||| ||| | |||||||||||  |||||||| | |   |  ||||||| | ||||||||||||||||||||||||   | |||    
T  6120459 attgtttgtaacgaccattcgatccc-gtcataatggatgcctttcataatgattgtaccatgaccatacaacggtctcctcgaccctatat---gcgct 6120364  T
Q  461 cttgacaagctcataatgtatgtatctctctctgcttc 498  Q
     |||||||||||| || |||||||| ||||| ||||||    
T  6120363 tttgacaagctcacaaggtatgtatatctctatgcttc 6120326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 489
Target Start/End: Original strand, 5527068 - 5527122
Alignment:
Q  435 gtctcctcgaccctatataaagagctcttgacaagctcataatgtatgtatctct 489  Q
    ||||||| |||||||||||||||| |||||||||||||| ||  |||||||||||    
T  5527068 gtctccttgaccctatataaagagttcttgacaagctcacaagatatgtatctct 5527122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 498
Target Start/End: Original strand, 26012245 - 26012309
Alignment:
Q  433 cggtctcctcgaccctatataaagagctcttgacaagctcataatgtatgtatctctctctgcttc 498  Q
    ||||||||| |||| |||||||| | ||||||||||||||| |||||| |||||||||| ||||||    
T  26012245 cggtctccttgacc-tatataaacacctcttgacaagctcacaatgtacgtatctctctatgcttc 26012309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 448 - 496
Target Start/End: Complemental strand, 18485303 - 18485255
Alignment:
Q  448 tatataaagagctcttgacaagctcataatgtatgtatctctctctgct 496  Q
    ||||||| ||| |||||||||||||| || |||||||||||||| ||||    
T  18485303 tatataatgagttcttgacaagctcacaaggtatgtatctctctatgct 18485255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1482 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1482
Description:

Target: scaffold1482; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 434 - 498
Target Start/End: Complemental strand, 1750 - 1686
Alignment:
Q  434 ggtctcctcgaccctatataaagagctcttgacaagctcataatgtatgtatctctctctgcttc 498  Q
    |||||||| ||| |||||||| ||||||| ||||| |||| || |||||||||||||| ||||||    
T  1750 ggtctcctagactctatataatgagctctggacaatctcacaaggtatgtatctctctatgcttc 1686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 25070911 - 25070972
Alignment:
Q  324 atcctctcctaccaataatagtctataactgctaccaatggttggtaacgctcattcaatct 385  Q
    ||||||||| |||||||||||  |||||| ||||| ||||||| |||||| ||||| |||||    
T  25070911 atcctctccaaccaataatagcatataacggctactaatggtttgtaacggtcatttaatct 25070972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 491
Target Start/End: Original strand, 5531150 - 5531206
Alignment:
Q  435 gtctcctcgaccctatataaagagctcttgacaagctcataatgtatgtatctctct 491  Q
    ||||||||||| |||||||| | ||||| |||||||||| || ||||||| ||||||    
T  5531150 gtctcctcgacactatataatgggctctcgacaagctcacaaagtatgtacctctct 5531206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University