View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11810_low_9 (Length: 479)
Name: NF11810_low_9
Description: NF11810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11810_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 468
Target Start/End: Complemental strand, 54350887 - 54350440
Alignment:
| Q |
18 |
agttccaccgggatcaaaattatgtcgatgatgactcataatgaagctccaccatgctagtgttgatgcaaattagtgtgtgtttaaaacacttattaac |
117 |
Q |
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| T |
54350887 |
agttccaccgggatcaaaattatgtcgatga---ctcataatgaagctccaccatgctagtgttgatgcaaattagtgtgtctttaaaacacttattaac |
54350791 |
T |
|
| Q |
118 |
annnnnnngggtacaaattagtgtcaacatctttatactattttctttatttttccttcccaaaaacaaagtgtttttcgaaaacgacggtttgtcttac |
217 |
Q |
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| T |
54350790 |
atttttttgggtacaaattagtgtcaacatctttatactattttctttatttttccttcccaaaaacaaagtgtttttcgaaaacgacagtttgtcttac |
54350691 |
T |
|
| Q |
218 |
acctaaagatcacaacatataacatcctaattattttattgaatgggtgaaggccgtaaaggggacactcgttgctcagatacaatgtttagcataagtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54350690 |
acctaaagatcacaacatataacatcctaattattttattgaatgggtgaaggccgtaaaggggacactcgttgctcagatacaatgtttaacataagtt |
54350591 |
T |
|
| Q |
318 |
gtattcgacaaaaacagtattgtattactagaacgttggcacatgcgaccttgtgttgtggtttttctgtgagatggtcaccaccaccacatgcactaac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54350590 |
gtattcgacaaaaacagtattgtattactagaacgttggcacatgcgaccttgtgttgtggtttttctgtgagatggtcaccaccaccacatgcactaac |
54350491 |
T |
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| Q |
418 |
gccgacaagtcatgtcacgtatctctcgtttcagctcatatttttgttctt |
468 |
Q |
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| T |
54350490 |
gccgacaagtcatgtcacgtatctctcgtttcagctcatatttttgttctt |
54350440 |
T |
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