View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_high_1 (Length: 754)
Name: NF11811_high_1
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 227 - 731
Target Start/End: Original strand, 35964159 - 35964671
Alignment:
| Q |
227 |
ggaaatgttaacgagtgttcttaagatgttctttaacaactaggcatcacaatggagcatagtggggatgaattttaccttctctgttctcatactttac |
326 |
Q |
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| T |
35964159 |
ggaaatgttaacgaatgttcttaagatactctttaacaattaggcatgacaatagggcataatggggatgaattttaccttctccatcctcatactttac |
35964258 |
T |
|
| Q |
327 |
gcccatatatttatctgttaccatgggcggagccatcgtgt--------gtgttcaaatgaaccccctcaactctatacg------ctaaaaatccgtat |
412 |
Q |
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||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||||||||||||||||| | ||||||||| |||| |
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| T |
35964259 |
gcccatatatttacctgttaccatgggcggagccat-gtgttagtcagggtgttcaaataaaccccctcaactctatatgtttacactaaaaatctgtat |
35964357 |
T |
|
| Q |
413 |
tttattgactttgaatccccagaaatttgaatgttgaaccatttttgcacctaccttgtctaatctctcctaacttactgcaagctatcacannnnnnnn |
512 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35964358 |
tttattgactttgaatcccctgaaatttgaatgttgaaccatttttgcacctaccttgtctaatctctcctaacttactgcaagctatcacactctctct |
35964457 |
T |
|
| Q |
513 |
nnnnnntatattaaagctgcaattgcagtcatgcttctctccatttatttatttattaattaaagaaatttaaagctgttgcaataataataaatttatt |
612 |
Q |
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| T |
35964458 |
------tatattaaagctgcaattgcagtcatgcttctctccatttatttatttattaattaaagaaatttaaagctgttgcaataataataaatttatt |
35964551 |
T |
|
| Q |
613 |
caaatcaataaaatggcatagctctgagtagtatttaaaacggcannnnnnnaagttaacatttgtttaaagtagta-nnnnnnnctttggccaaattta |
711 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| |
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| T |
35964552 |
caaatcaataaaatggcatagctctgagtagtatttaaaacggcatttttttaagttaacatttgtttgaagtagtattttttttctttggccaaattta |
35964651 |
T |
|
| Q |
712 |
aagtagcatttaaaacggca |
731 |
Q |
| |
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|||||||||||||||||||| |
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| T |
35964652 |
aagtagcatttaaaacggca |
35964671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 48 - 162
Target Start/End: Original strand, 35963977 - 35964091
Alignment:
| Q |
48 |
attgaagaaacggagaacttgaatgttcctaagaaaaacaaatttttagctctttacaagtcaaacgcaaagcgtatacttctaaagctttccaagctaa |
147 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35963977 |
attgaagaaacagagaacttgaatgttcctaagagaaacaaatttctagctctttacaagtcaaacgcaaagcgtctacttctaaagctttccaagctaa |
35964076 |
T |
|
| Q |
148 |
aaaagaatcagaagg |
162 |
Q |
| |
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||||||||||||||| |
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| T |
35964077 |
aaaagaatcagaagg |
35964091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 539 - 635
Target Start/End: Original strand, 45054784 - 45054885
Alignment:
| Q |
539 |
agtcatgcttctctccatttatttatttattaattaaagaaatttaaagctgttgcaataataataaatttattcaaa-----tcaataaaatggcatag |
633 |
Q |
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||||||| ||||||||||||||| ||| |||||||||||| ||||||||||| |||||| | |||||||||||||||| ||||||||||||||||| |
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| T |
45054784 |
agtcatgtttctctccatttattaattaattaattaaagatatttaaagctgatgcaatcacaataaatttattcaaaatatttcaataaaatggcatag |
45054883 |
T |
|
| Q |
634 |
ct |
635 |
Q |
| |
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|| |
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|
| T |
45054884 |
ct |
45054885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 409 - 503
Target Start/End: Original strand, 45054609 - 45054703
Alignment:
| Q |
409 |
gtattttattgactttgaatccccagaaatttgaatgttgaaccatttttgcacctaccttgtctaatctctcctaacttactgcaagctatcac |
503 |
Q |
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||||||||||||| || || || | |||||||||| ||||||| |||||||||||| | || |||||||||||| || ||||||||||||| |
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| T |
45054609 |
gtattttattgaccttaaaccctctaaaatttgaatattgaaccctttttgcacctatgctctccaatctctcctaatttgttgcaagctatcac |
45054703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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