View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_high_11 (Length: 358)
Name: NF11811_high_11
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 158 - 347
Target Start/End: Complemental strand, 55067741 - 55067552
Alignment:
| Q |
158 |
tttatgttatttatacgctaaaattaggttggagtatcccttgcactctgtttctaacataatcatacaggttaaaaaattcaacaaagaaaaagattgt |
257 |
Q |
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| T |
55067741 |
tttatgttatttatacgctaaaattaggttggagtatcccttgcactctgtttctaacataatcatacaggttaaaaaattgaacaaagaaaaagattgt |
55067642 |
T |
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| Q |
258 |
ttgtttataaatttataagaaacagacatattgaaatggaaaatagagaataccataacaaaaattgcatcttatttctttattcatctc |
347 |
Q |
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| T |
55067641 |
ttgtttataaatttataagaaacagacatatagaaatggaaaatagagaataccacaacaaaaattgcatcttatttctttattcatctc |
55067552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 55067873 - 55067752
Alignment:
| Q |
1 |
taatgtgatttttctaaagcttttgttttgggattggtaaaatcaaagggtgtactcaccctcacatgtgtttgagactttcggatcttggttaattttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55067873 |
taatgtgatttttctaaagcttttgttttgggattggtaa--tcaaagggtgtactcaccctcacatgtgtttgagactttcggatcttggttaattttt |
55067776 |
T |
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| Q |
101 |
tcttgtttgtgtgattttaggatt |
124 |
Q |
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| T |
55067775 |
tcttgtttgtgtgattttaggatt |
55067752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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