View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11811_high_18 (Length: 296)

Name: NF11811_high_18
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11811_high_18
NF11811_high_18
[»] scaffold0133 (4 HSPs)
scaffold0133 (15-155)||(9509-9649)
scaffold0133 (149-278)||(9673-9802)
scaffold0133 (149-278)||(14012-14141)
scaffold0133 (15-123)||(13857-13965)
[»] scaffold0256 (2 HSPs)
scaffold0256 (151-278)||(10295-10422)
scaffold0256 (55-154)||(10169-10268)
[»] chr6 (4 HSPs)
chr6 (15-156)||(16782107-16782248)
chr6 (149-207)||(16659176-16659233)
chr6 (154-207)||(16661196-16661248)
chr6 (240-278)||(16876027-16876065)
[»] chr3 (2 HSPs)
chr3 (26-146)||(38938385-38938504)
chr3 (185-243)||(38938275-38938333)
[»] chr5 (2 HSPs)
chr5 (152-243)||(11982848-11982938)
chr5 (27-73)||(11983122-11983168)


Alignment Details
Target: scaffold0133 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 9509 - 9649
Alignment:
Q  15 atgaatcaaagaggtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgt 114  Q
    |||||||||||  ||||||||||||||||| |||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |||||||    
T  9509 atgaatcaaagttgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgt 9608  T
Q  115 agttcttctgcaacatgtcaaaattggctgctatggaaaaa 155  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  9609 agttcttctgcaacatgtcaaaattggctgctatagaaaaa 9649  T

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Target: scaffold0133; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 9673 - 9802
Alignment:
Q  149 ggaaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttgttctt 248  Q
    |||||||||||||  |||||  ||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  9673 ggaaaaaacaagtgttgaaggcacatggccatgaaagggaaaaaaacaaaattggaaaacttatcttatgaaacaacatcatgctcgttcatttgttctt 9772  T
Q  249 gtgtggcctagatttcatcagagagaatcc 278  Q
    |||||||||||||||||||| ||| |||||    
T  9773 gtgtggcctagatttcatcaaagaaaatcc 9802  T

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Target: scaffold0133; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 149 - 278
Target Start/End: Original strand, 14012 - 14141
Alignment:
Q  149 ggaaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttgttctt 248  Q
    ||||||||||||||||||||  ||||||| |||||  |||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||    
T  14012 ggaaaaaacaagttgtgaaggcacatggccatgaaaaggaaaaaaacaaaattggaaaacttatcatatgaaacaacatcatgaccgttcatttgttctt 14111  T
Q  249 gtgtggcctagatttcatcagagagaatcc 278  Q
    |||||||||||||||| ||| |||||||||    
T  14112 gtgtggcctagatttcgtcaaagagaatcc 14141  T

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Target: scaffold0133; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 13857 - 13965
Alignment:
Q  15 atgaatcaaagaggtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgt 114  Q
    |||||||||||  ||||||||||||||||| |||| ||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||| |||||||    
T  13857 atgaatcaaagttgtttggattggagatgattttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatatattaaatcagtggatgt 13956  T
Q  115 agttcttct 123  Q
    |||||||||    
T  13957 agttcttct 13965  T

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Target: scaffold0256 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 151 - 278
Target Start/End: Original strand, 10295 - 10422
Alignment:
Q  151 aaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttgttcttgt 250  Q
    ||||||||||||||||||  ||||||| |||||  |||| |||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  10295 aaaaaacaagttgtgaaggcacatggccatgaaaaggaaaaaaaaaaaattggaaaacttatcttatgtaacaacatcatgcccgttcatttgttcttgt 10394  T
Q  251 gtggcctagatttcatcagagagaatcc 278  Q
    |||||||||||||||||| |||||||||    
T  10395 gtggcctagatttcatcaaagagaatcc 10422  T

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Target: scaffold0256; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 10169 - 10268
Alignment:
Q  55 ggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttctgcaacatgtcaaaattggctgctatggaaaa 154  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| |||||    
T  10169 ggaagatgaaatatgcgttgttatttgttttcaaagattatatattaaatcagtggatgtagttcttttgcaacatgtcaaaattgactgctatagaaaa 10268  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 156
Target Start/End: Original strand, 16782107 - 16782248
Alignment:
Q  15 atgaatcaaagaggtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgt 114  Q
    |||||||||||  |||| |||| |||||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||| |||||||||| |||||||    
T  16782107 atgaatcaaagttgtttagattagagatgactttgctctaggaagatgaaatatgagttgttatttgttttcaaagattatctattaaatcagtggatgt 16782206  T
Q  115 agttcttctgcaacatgtcaaaattggctgctatggaaaaaa 156  Q
    |||| ||||||||| ||| || ||||| |||||| |||||||    
T  16782207 agtttttctgcaacttgtgaatattggttgctatagaaaaaa 16782248  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 16659176 - 16659233
Alignment:
Q  149 ggaaaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaa 207  Q
    |||||||||| ||||| ||| |||||||||||||||||||| |||||||| ||||||||    
T  16659176 ggaaaaaacatgttgttaaggtacatggcaatgaaggggaa-aaaacaaatttggaaaa 16659233  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 207
Target Start/End: Original strand, 16661196 - 16661248
Alignment:
Q  154 aaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaa 207  Q
    ||||| ||||||||| |||||||||||||||||||| |||| ||||||||||||    
T  16661196 aaacatgttgtgaaggtacatggcaatgaaggggaa-aaaataaaattggaaaa 16661248  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 16876065 - 16876027
Alignment:
Q  240 tttgttcttgtgtggcctagatttcatcagagagaatcc 278  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  16876065 tttgttcttgtgtggcctagatttcaccggagagaatcc 16876027  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 38938504 - 38938385
Alignment:
Q  26 aggtttggattggagatgactttggtctaggaagatgaaatatgcgttgtgatttattttcaaagattatatattaaatcaatggatgtagttcttctgc 125  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| || || |||| |||||||||||| | |||||||||| ||||||||||||||||||    
T  38938504 aggtttggattggagatg-ctttgctctaggaagatgaaatatgtgtagttattttttttcaaagattgtctattaaatcagtggatgtagttcttctgc 38938406  T
Q  126 aacatgtcaaaattggctgct 146  Q
    ||| |||||| ||||||||||    
T  38938405 aacttgtcaatattggctgct 38938385  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 38938333 - 38938275
Alignment:
Q  185 gggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttg 243  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  38938333 gggaaaaaaacaaaattggaaaacttatcatatgaaacaacatcatgtccattcatttg 38938275  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 11982938 - 11982848
Alignment:
Q  152 aaaaacaagttgtgaagctacatggcaatgaaggggaataaaacaaaattggaaaacttatcttatgaaacaacatcatgcccattcatttg 243  Q
    ||||||||||||  ||| |||||| ||||||||||||| |||||||||||||||||||||||   | ||||||||||||| |||||||||||    
T  11982938 aaaaacaagttggtaaggtacatgacaatgaaggggaa-aaaacaaaattggaaaacttatcaattcaaacaacatcatgtccattcatttg 11982848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 11983168 - 11983122
Alignment:
Q  27 ggtttggattggagatgactttggtctaggaagatgaaatatgcgtt 73  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  11983168 ggtttggattggagatgactttgctctatgaagatgaaatatgcgtt 11983122  T

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