View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11811_high_2 (Length: 753)
Name: NF11811_high_2
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 49693759 - 49693379
Alignment:
| Q |
1 |
tcttcattactttttctttatgaccgatgaccatagaatggaatgaattacaactaggactcatccctttttctttctctccttttagaagcatgggatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
49693759 |
tcttcattactttttctttatgaccgatgaccatataatggaat----tacaactaggactcatccctttttctttctctccttttaaaagcatgggatc |
49693664 |
T |
|
| Q |
101 |
tatttacactctttaattgtatttataaatttgaccgatagaggagtgagcg----cgagtgctacaaacactaacttcaaccattttataaatatatcc |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49693663 |
tatttacactctttaattgtatttataaatt-gaccgatagaggagtgagtgagtgcgagtgctacaaacactaacttcaaccattttataaatatatcc |
49693565 |
T |
|
| Q |
197 |
tattgatgaatcgagaattaagtaattatcataagaatatattttgttttacataacttgcacataaggaaatgattcttaaatgtcaaatacatgttca |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49693564 |
tattgatgaatcgagaattaagtaattatcataagaatatattttgttttacataacttgcacataaggaaatgattcttaaatgtcaaatacatgttca |
49693465 |
T |
|
| Q |
297 |
atgaattttgtacgtattttttaaatgtcaataaattgtaagtccaacatagagatagataaagtgtctcaaatttgttgtctgta |
382 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49693464 |
atgaattttgtatgtattttttaaatctgaataaattgtaagtccaagatagagatagataaagtgtctcaaatttgttgtctgta |
49693379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 591 - 736
Target Start/End: Complemental strand, 49693241 - 49693096
Alignment:
| Q |
591 |
tactagtaactgtaattagaaaaatggattaaccactgacattgggcgtaatagattcactttcccatttatctgttaatgactttggtgaagttgatac |
690 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
49693241 |
tactagtaactgtaattagaaaaatggattaaccactgacattgggcgtaatagattcactttcccatttctctgtcaatgactttggtgaagttgatac |
49693142 |
T |
|
| Q |
691 |
ttcttgcttcctatcgatggaagttccaactatcggtgaatgtact |
736 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
49693141 |
ttcttgcttcctatagatagaagttccaactatcggtgaatgtact |
49693096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 420 - 536
Target Start/End: Complemental strand, 49693354 - 49693237
Alignment:
| Q |
420 |
caaataagaatgttgttgcacaaatttcatgaaatccttgggagttggggtttatttgctcaccnnnnnnnag-tctttttaagcatgtgtaatactcat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
49693354 |
caaataagaatgttgttgcacaaatttcatgaaatccttgggagttggagtttatttgctcacctttttttagttctttttaagcatgtgtaatactcat |
49693255 |
T |
|
| Q |
519 |
tactttaacccattacta |
536 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
49693254 |
tactttaacccattacta |
49693237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University