View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11811_high_21 (Length: 266)

Name: NF11811_high_21
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11811_high_21
NF11811_high_21
[»] chr8 (8 HSPs)
chr8 (8-249)||(22469646-22469887)
chr8 (7-73)||(12107048-12107114)
chr8 (7-73)||(21184299-21184365)
chr8 (8-77)||(23976304-23976372)
chr8 (11-75)||(25149455-25149519)
chr8 (19-78)||(22426842-22426901)
chr8 (7-73)||(12106867-12106933)
chr8 (19-73)||(21185887-21185941)
[»] scaffold0066 (1 HSPs)
scaffold0066 (8-75)||(15363-15430)
[»] chr3 (12 HSPs)
chr3 (7-73)||(26498729-26498795)
chr3 (6-75)||(33343004-33343073)
chr3 (7-75)||(1426482-1426550)
chr3 (8-80)||(20758952-20759024)
chr3 (7-75)||(39541672-39541740)
chr3 (8-75)||(15031186-15031253)
chr3 (8-75)||(33412202-33412269)
chr3 (7-76)||(38498132-38498201)
chr3 (7-75)||(48755325-48755393)
chr3 (8-75)||(21514742-21514809)
chr3 (9-73)||(21514959-21515023)
chr3 (7-75)||(42453041-42453109)
[»] chr4 (15 HSPs)
chr4 (7-75)||(55382769-55382837)
chr4 (7-78)||(37695145-37695216)
chr4 (7-73)||(10757570-10757636)
chr4 (7-73)||(10970741-10970807)
chr4 (6-75)||(2634236-2634305)
chr4 (7-75)||(47943661-47943729)
chr4 (8-75)||(30471032-30471099)
chr4 (6-78)||(18830570-18830641)
chr4 (9-75)||(2063144-2063210)
chr4 (7-73)||(30378951-30379017)
chr4 (7-73)||(47463814-47463880)
chr4 (21-75)||(47463916-47463970)
chr4 (9-73)||(18836280-18836344)
chr4 (7-75)||(22018063-22018131)
chr4 (7-75)||(29908887-29908955)
[»] chr1 (1 HSPs)
chr1 (7-75)||(50335439-50335507)
[»] chr7 (5 HSPs)
chr7 (7-75)||(36150846-36150914)
chr7 (7-75)||(38761205-38761273)
chr7 (7-74)||(27508576-27508642)
chr7 (7-73)||(45013084-45013150)
chr7 (8-73)||(5080323-5080388)
[»] chr6 (6 HSPs)
chr6 (7-75)||(13536558-13536626)
chr6 (7-73)||(10587887-10587953)
chr6 (9-75)||(19295496-19295562)
chr6 (7-75)||(10588084-10588152)
chr6 (7-75)||(25089150-25089218)
chr6 (7-75)||(28752240-28752308)
[»] chr5 (4 HSPs)
chr5 (7-71)||(10760220-10760284)
chr5 (7-53)||(19564868-19564914)
chr5 (11-75)||(30852584-30852648)
chr5 (7-71)||(21211419-21211483)
[»] scaffold0102 (1 HSPs)
scaffold0102 (7-75)||(23890-23958)
[»] chr2 (2 HSPs)
chr2 (7-73)||(32092759-32092825)
chr2 (8-73)||(24007094-24007159)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 8 - 249
Target Start/End: Original strand, 22469646 - 22469887
Alignment:
Q  8 caatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatcttccctagatatatcatattagtgtttgtgcat 107  Q
    |||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22469646 caatttatctgcatttaaggactaaagtgacgactcatttcttattcatagactaaagtgactaatcttccctagatatatcatattagtgtttgtgcat 22469745  T
Q  108 aagcatagctttttcattatatgagataagatcaatggt-aaagggaatgaataaaacaatgtcattatgtcacattagggaaaatggaaaggtgttaat 206  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22469746 aagcatagctttttcattatatgagataagatcaatggtaaaagggaatgaataaaacaatgtcattatgtcacattagggaaaatggaaaggtgttaat 22469845  T
Q  207 acttgtatgtctagcaatttaatcacatttgtggtttctaatg 249  Q
    ||||||||||||| | |  ||||||||||||||||||||||||    
T  22469846 acttgtatgtctaccta-ctaatcacatttgtggtttctaatg 22469887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 12107048 - 12107114
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||||||| ||||||||||||||||||||| ||  |||| |||| | |||||||||||||||||    
T  12107048 gcaatttatctgcattcaaggactaaagtgacgacttctttcctatttagagactaaagtgactaat 12107114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 21184365 - 21184299
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||||||| |||||  |||||| ||||||| |||||||| ||||||  ||||||||||||||||    
T  21184365 gcaatttatctgcattcggggactagagtgacgactcatttcctattcagggactaaagtgactaat 21184299  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 23976304 - 23976372
Alignment:
Q  8 caatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatcttc 77  Q
    |||||||||| |||||| | |||||| ||||| ||||||||||||| |  ||||||||||||||||||||    
T  23976304 caatttatctacattcaggaactaaaatgacgactcatttcttattga-ggactaaagtgactaatcttc 23976372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 25149455 - 25149519
Alignment:
Q  11 tttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||| ||||||  ||||| ||||||| |||||||| ||||||  ||||||||||||||||||    
T  25149455 tttatctgcattcagagactatagtgacgactcatttcctattcagggactaaagtgactaatct 25149519  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 22426901 - 22426842
Alignment:
Q  19 cattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatcttcc 78  Q
    |||||| |||||||||||| | ||| |||| ||||||  |||||||||||||||||||||    
T  22426901 cattcatggactaaagtgatgactcgtttcctattcagggactaaagtgactaatcttcc 22426842  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 12106933 - 12106867
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||| ||| |||||| |||||||||||||  ||||||||  |||||  ||||||||||||||||    
T  12106933 gcaatttctctgcattcagggactaaagtgactactcatttcccattcagggactaaagtgactaat 12106867  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 21185887 - 21185941
Alignment:
Q  19 cattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    |||||| |||||||||||||  ||||||||| |||||  ||||||||||||||||    
T  21185887 cattcagggactaaagtgactactcatttctcattcagcgactaaagtgactaat 21185941  T

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Target: scaffold0066 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 15430 - 15363
Alignment:
Q  8 caatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    |||||||||| ||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||||    
T  15430 caatttatctgcattcaaggactaaagtgacaactcatttctaattcaaagactaaagtgactaatct 15363  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 26498729 - 26498795
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||||||| |||||| |||||||||||| | |||||||| |||||| |||||||||||||||||    
T  26498729 gcaatttatctgcattcagggactaaagtgatgactcatttcctattcagagactaaagtgactaat 26498795  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 33343073 - 33343004
Alignment:
Q  6 agcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    |||||||||||| |||||| |||||||||||||| |||||||  ||||||  ||||||||||||||||||    
T  33343073 agcaatttatctgcattcagggactaaagtgacgactcattttctattcagggactaaagtgactaatct 33343004  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 1426550 - 1426482
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| |||||| |  ||||||||||| |||||||| |||||| |||||||||||||||||||    
T  1426550 gcaatttatctgcattcaggatctaaagtgacgactcatttcctattcagagactaaagtgactaatct 1426482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 20759024 - 20758952
Alignment:
Q  8 caatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatcttccct 80  Q
    ||||||||||  |||||||||||||||||||| || ||||| |||||| ||| |||||||| |||||| ||||    
T  20759024 caatttatctgtattcaaggactaaagtgacgacttatttcatattcagagattaaagtgattaatctcccct 20758952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 39541740 - 39541672
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| ||||||  ||||||||||||| |||||||| ||||||  |||||||| |||||||||    
T  39541740 gcaatttatctgcattcagagactaaagtgacgactcatttcctattcagtgactaaagcgactaatct 39541672  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 15031253 - 15031186
Alignment:
Q  8 caatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    |||||||||| ||||||||||||||||||||| ||| ||||  |||||  |||||||||| |||||||    
T  15031253 caatttatctgcattcaaggactaaagtgacgactcttttcccattcaaggactaaagtggctaatct 15031186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 33412269 - 33412202
Alignment:
Q  8 caatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    |||||||||| ||||| | || ||||||||||  ||||||| |||||| |||||||||||||||||||    
T  33412269 caatttatctgcattcgaagattaaagtgacgattcatttcctattcaaagactaaagtgactaatct 33412202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 38498201 - 38498132
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatctt 76  Q
    ||||||||||| |||||| ||||||||||||   |||||||  |||||| |||||||| |||||||||||    
T  38498201 gcaatttatctgcattcagggactaaagtgatcactcattttctattcagagactaaactgactaatctt 38498132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 48755393 - 48755325
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    |||| |||||| ||||||  ||||||||||||| ||| |||| ||||||  ||||||||||||||||||    
T  48755393 gcaacttatctgcattcagagactaaagtgacgactcctttcctattcagggactaaagtgactaatct 48755325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 21514809 - 21514742
Alignment:
Q  8 caatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||  ||||| |||||||||||||| ||  |||  |||||| |||||||||||||||||||    
T  21514809 caatttatctgtattcagggactaaagtgacgacttcttttatattcaaagactaaagtgactaatct 21514742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 21514959 - 21515023
Alignment:
Q  9 aatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||||| ||||||||||||||| ||||  ||||||||  |||||  ||| ||||||||||||    
T  21514959 aatttatctacattcaaggactaaaatgactactcatttccaattcagggacaaaagtgactaat 21515023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 42453109 - 42453041
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||| | ||||||  ||||||||||||| |||||||  ||||||  || |||||||||||||||    
T  42453109 gcaatttatttgcattcatagactaaagtgacgactcattttctattcaaggattaaagtgactaatct 42453041  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 55382769 - 55382837
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| |||||| ||| |||||||||| |||||||| ||||||  ||||||||||||||||||    
T  55382769 gcaatttatctgcattcagggattaaagtgacgactcatttcctattcaaggactaaagtgactaatct 55382837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 37695145 - 37695216
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatcttcc 78  Q
    ||||||||||| ||||||||||||||||||| | |||||||| | |||||  ||||||||||| ||||||||    
T  37695145 gcaatttatctgcattcaaggactaaagtgatgactcatttccttttcatgaactaaagtgaccaatcttcc 37695216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 10757636 - 10757570
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||||||| |||||| |||||||||||||  ||||||||| |||||  ||||||||||||||||    
T  10757636 gcaatttatctacattcagggactaaagtgactactcatttctcattcagggactaaagtgactaat 10757570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 10970807 - 10970741
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||||||| |||||| |||||||||||||  ||||||||| |||||  ||||||||||||||||    
T  10970807 gcaatttatctacattcagggactaaagtgactactcatttctcattcagggactaaagtgactaat 10970741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 2634236 - 2634305
Alignment:
Q  6 agcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    |||||||||||| ||||||  ||||||||||| | ||||||||||||| |  ||||||||||||||||||    
T  2634236 agcaatttatctacattcagtgactaaagtgaagactcatttcttatttaaggactaaagtgactaatct 2634305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 47943661 - 47943729
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| |||| |||||||||||||||| |||||||| ||||||  |||||||  |||||||||    
T  47943661 gcaatttatctgcatttaaggactaaagtgacgactcatttcctattcagggactaaaacgactaatct 47943729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Original strand, 30471032 - 30471099
Alignment:
Q  8 caatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    |||||||||| |||||| | |||||||||||| ||| |||  |||||| |||||||||||||||||||    
T  30471032 caatttatctacattcaggaactaaagtgacgactctttttctattcagagactaaagtgactaatct 30471099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Complemental strand, 18830641 - 18830570
Alignment:
Q  6 agcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatcttcc 78  Q
    |||||||||||| ||| || |||||||||||||  ||||||||| |||||  |||||||||||||||| ||||    
T  18830641 agcaatttatctgcatcca-ggactaaagtgactactcatttctcattcagggactaaagtgactaattttcc 18830570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 2063210 - 2063144
Alignment:
Q  9 aatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||| |||||||| || |||||| || |||||||| | ||||  ||||||||||||||||||    
T  2063210 aatttatctgcattcaagaaccaaagtgccgactcatttcctcttcagggactaaagtgactaatct 2063144  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 30378951 - 30379017
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||| ||| |||| | |||||||||||||  |||||||| |||| | |||||||||||||||||    
T  30378951 gcaatttctctgcattaagggactaaagtgactactcatttcctatttagagactaaagtgactaat 30379017  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 47463880 - 47463814
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||||||| |||||| |||||||||||||  ||||||||  || ||  ||||||||||||||||    
T  47463880 gcaatttatctgcattcagggactaaagtgactactcatttcccatccagggactaaagtgactaat 47463814  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 47463916 - 47463970
Alignment:
Q  21 ttcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    |||| |||||||||||||| |||||||| ||||||   |||||||||||||||||    
T  47463916 ttcagggactaaagtgacgactcatttcctattcaggaactaaagtgactaatct 47463970  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 18836344 - 18836280
Alignment:
Q  9 aatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||||| |||||| |||||||||||||  ||||||||| |||||  ||| ||| ||||||||    
T  18836344 aatttatctgcattcagggactaaagtgactactcatttctcattcagggacaaaaatgactaat 18836280  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 22018063 - 22018131
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| ||||||  ||| ||| ||||| |||||||| |||| |  ||||||||||||||||||    
T  22018063 gcaatttatctgcattcagagacgaaaatgacgactcatttcctatttagggactaaagtgactaatct 22018131  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 29908955 - 29908887
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| ||| ||  ||||||||||||| |||||||| ||||||  ||  ||||||||||||||    
T  29908955 gcaatttatctgcatccagtgactaaagtgacgactcatttcctattcaaggatcaaagtgactaatct 29908887  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 50335507 - 50335439
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| |||||| |||||||||||||| |||||||| ||||||  || |||||||||||||||    
T  50335507 gcaatttatctgcattcagggactaaagtgacgactcatttcctattcagggattaaagtgactaatct 50335439  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 36150914 - 36150846
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| |||||| ||| | |||||||| |||||||| |||| || ||||||||||||||||||    
T  36150914 gcaatttatctgcattcatggatttaagtgacgactcatttcctatttatggactaaagtgactaatct 36150846  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 38761205 - 38761273
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| |||||| |||||||||||| | |||||||| ||||||  ||||||||||| ||||||    
T  38761205 gcaatttatctgcattcagggactaaagtgatgactcatttcctattcagggactaaagtgattaatct 38761273  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 27508642 - 27508576
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatc 74  Q
    ||||||||||| |||||| |||||||||||| | |||||||| ||||||  |||| ||||||||||||    
T  27508642 gcaatttatctgcattcagggactaaagtgatgactcatttcctattcagggact-aagtgactaatc 27508576  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 45013084 - 45013150
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||||| | ||||||||||||||| ||||| ||| |||| |||| |  ||||||||||||||||    
T  45013084 gcaatttatttgcattcaaggactaaactgacgactcttttcctattaagggactaaagtgactaat 45013150  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 5080323 - 5080388
Alignment:
Q  8 caatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    |||||||||| |||||| |||||||| | ||| ||  |||| |||||| |||||||||||||||||    
T  5080323 caatttatctgcattcagggactaaaataacgacttctttcctattcagagactaaagtgactaat 5080388  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 13536626 - 13536558
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| |||||| | | |||||||||||||| |||| ||||||  ||||||||||||||||||    
T  13536626 gcaatttatctgcattcaggcattaaagtgacggctcctttcctattcagggactaaagtgactaatct 13536558  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 10587953 - 10587887
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||| ||| |||||| |||||||||||||  ||| ||||| |||||| ||||||||||||||||    
T  10587953 gcaatttctctgcattcagggactaaagtgactactcctttctcattcatggactaaagtgactaat 10587887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 19295496 - 19295562
Alignment:
Q  9 aatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||| |||||| |||||||||| ||| ||| |||  |||||| |||||||||||||||||||    
T  19295496 aatttatctgcattcagggactaaagtaacgactccttttctattcagagactaaagtgactaatct 19295562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 10588084 - 10588152
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| |||||| ||||| |||||||  ||| |||| ||||||  ||||||||||||||||||    
T  10588084 gcaatttatctgcattcatggacttaagtgacaactcctttcctattcagggactaaagtgactaatct 10588152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 25089218 - 25089150
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| ||||||  |||||||||| || ||| | || ||||||| ||||||||||||||||||    
T  25089218 gcaatttatctgcattcagagactaaagtggcgactcctctcctattcatggactaaagtgactaatct 25089150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 28752308 - 28752240
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    ||||||||||| |||||| | |||||||||||  ||  |||||| ||||  ||||||||||||||||||    
T  28752308 gcaatttatctgcattcaggtactaaagtgacatcttctttcttgttcaaggactaaagtgactaatct 28752240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 10760220 - 10760284
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgacta 71  Q
    ||||||||||| ||||||  |||||||||||||||||||||| ||||||  || |||||||||||    
T  10760220 gcaatttatctgcattcagagactaaagtgacggctcatttcctattcagggattaaagtgacta 10760284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 19564868 - 19564914
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttatt 53  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||||    
T  19564868 gcaatttatctccattcaaggactaaagtgacgactgatttcctatt 19564914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 30852648 - 30852584
Alignment:
Q  11 tttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    |||||||  ||||| |||||||||||||| || ||||| ||||||  ||||||||||||||||||    
T  30852648 tttatctgtattcagggactaaagtgacgacttatttcctattcaaggactaaagtgactaatct 30852584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 21211483 - 21211419
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgacta 71  Q
    ||||||| ||| |||||| |||||||||||||  ||||||||  |||||  ||||||||||||||    
T  21211483 gcaatttttctgcattcagggactaaagtgactactcatttcccattcagggactaaagtgacta 21211419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 23958 - 23890
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaatct 75  Q
    |||||||||||  ||||||||||||||| |||| |||||||| |||| |   |||||||||||||||||    
T  23958 gcaatttatctatattcaaggactaaagggacgactcatttcctatttaggaactaaagtgactaatct 23890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 32092825 - 32092759
Alignment:
Q  7 gcaatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||| ||| |||||| |||||||||||||  ||||||||  |||||  ||||||||||||||||    
T  32092825 gcaatttctctgcattcagggactaaagtgactactcatttcccattcagggactaaagtgactaat 32092759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 73
Target Start/End: Original strand, 24007094 - 24007159
Alignment:
Q  8 caatttatctccattcaaggactaaagtgacggctcatttcttattcatagactaaagtgactaat 73  Q
    ||||||||||  |||||||||||||||| ||| |||||||| || |||  ||| ||||||||||||    
T  24007094 caatttatctgtattcaaggactaaagtaacgactcatttcctagtcaaggaccaaagtgactaat 24007159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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