View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11811_high_28 (Length: 236)

Name: NF11811_high_28
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11811_high_28
NF11811_high_28
[»] chr8 (30 HSPs)
chr8 (5-229)||(22469379-22469602)
chr8 (30-179)||(12106863-12107012)
chr8 (2-175)||(25149238-25149411)
chr8 (15-179)||(21124478-21124642)
chr8 (5-179)||(23976086-23976261)
chr8 (5-179)||(18324106-18324280)
chr8 (28-179)||(21185794-21185945)
chr8 (20-179)||(4288918-4289080)
chr8 (20-142)||(35202722-35202845)
chr8 (20-165)||(37494325-37494464)
chr8 (5-179)||(31254013-31254180)
chr8 (25-179)||(10289327-10289480)
chr8 (31-179)||(23625105-23625253)
chr8 (2-127)||(22326454-22326579)
chr8 (81-179)||(12107020-12107118)
chr8 (17-173)||(37543803-37543950)
chr8 (93-176)||(21184298-21184381)
chr8 (72-175)||(22426847-22426949)
chr8 (72-175)||(25149414-25149517)
chr8 (72-176)||(37543968-37544072)
chr8 (72-175)||(23976267-23976368)
chr8 (72-167)||(21124335-21124430)
chr8 (72-175)||(22469608-22469711)
chr8 (72-139)||(23625070-23625137)
chr8 (20-59)||(31253996-31254035)
chr8 (21-59)||(21124420-21124458)
chr8 (5-59)||(21124436-21124490)
chr8 (27-108)||(24609093-24609174)
chr8 (20-73)||(25149372-25149425)
chr8 (20-49)||(29585576-29585605)
[»] chr7 (23 HSPs)
chr7 (5-179)||(27508685-27508859)
chr7 (5-177)||(14197457-14197629)
chr7 (15-178)||(36150935-36151098)
chr7 (5-176)||(45012848-45013018)
chr7 (5-173)||(5080111-5080279)
chr7 (15-179)||(38760990-38761152)
chr7 (15-178)||(15000765-15000928)
chr7 (15-178)||(43257261-43257424)
chr7 (66-178)||(15272320-15272432)
chr7 (5-142)||(6441378-6441514)
chr7 (20-175)||(3404581-3404735)
chr7 (72-175)||(27508577-27508679)
chr7 (72-175)||(38761168-38761271)
chr7 (5-155)||(37787707-37787857)
chr7 (20-73)||(45012982-45013035)
chr7 (92-176)||(5080305-5080389)
chr7 (100-175)||(15000645-15000721)
chr7 (20-73)||(27508668-27508721)
chr7 (15-59)||(14197607-14197651)
chr7 (20-59)||(6441492-6441531)
chr7 (26-73)||(14197625-14197672)
chr7 (72-175)||(36150848-36150951)
chr7 (21-55)||(5080261-5080295)
[»] chr3 (33 HSPs)
chr3 (15-179)||(15031339-15031503)
chr3 (15-176)||(26498547-26498708)
chr3 (5-175)||(11989045-11989215)
chr3 (20-179)||(38498227-38498386)
chr3 (19-179)||(21514867-21515027)
chr3 (5-142)||(48755436-48755574)
chr3 (5-179)||(15005067-15005241)
chr3 (5-179)||(33343114-33343287)
chr3 (5-174)||(14434641-14434810)
chr3 (21-178)||(20759052-20759209)
chr3 (4-175)||(18445405-18445576)
chr3 (21-142)||(44967980-44968100)
chr3 (31-175)||(41984905-41985049)
chr3 (31-158)||(39541745-39541872)
chr3 (5-130)||(1426593-1426709)
chr3 (19-176)||(26920278-26920435)
chr3 (72-175)||(15031188-15031291)
chr3 (72-175)||(48755327-48755430)
chr3 (15-177)||(26840107-26840268)
chr3 (5-59)||(15031297-15031351)
chr3 (24-101)||(36383126-36383203)
chr3 (72-175)||(26498692-26498795)
chr3 (73-175)||(33343006-33343108)
chr3 (21-179)||(43562605-43562754)
chr3 (15-59)||(48755414-48755458)
chr3 (72-175)||(1426484-1426587)
chr3 (20-59)||(1426576-1426615)
chr3 (72-175)||(21514744-21514847)
chr3 (20-86)||(7300140-7300206)
chr3 (15-59)||(15031275-15031319)
chr3 (72-175)||(42453043-42453146)
chr3 (72-175)||(43562776-43562879)
chr3 (15-55)||(11989197-11989237)
[»] chr2 (15 HSPs)
chr2 (15-179)||(32092755-32092919)
chr2 (5-179)||(22092969-22093143)
chr2 (25-179)||(24006876-24007030)
chr2 (15-97)||(39598585-39598667)
chr2 (4-101)||(8219247-8219335)
chr2 (21-173)||(31820039-31820191)
chr2 (20-125)||(17914097-17914202)
chr2 (4-153)||(31499373-31499521)
chr2 (72-175)||(39598683-39598786)
chr2 (72-142)||(32092903-32092973)
chr2 (76-156)||(22092879-22092959)
chr2 (72-175)||(31819915-31820017)
chr2 (15-73)||(8219226-8219284)
chr2 (24-73)||(39598641-39598690)
chr2 (72-176)||(24007056-24007160)
[»] chr6 (20 HSPs)
chr6 (17-179)||(26705149-26705311)
chr6 (5-179)||(13536669-13536844)
chr6 (2-179)||(21222461-21222638)
chr6 (21-184)||(19295272-19295435)
chr6 (6-179)||(25089262-25089435)
chr6 (52-179)||(10587883-10588010)
chr6 (2-179)||(10672615-10672791)
chr6 (15-142)||(10862132-10862258)
chr6 (72-175)||(13536560-13536663)
chr6 (72-175)||(19295457-19295560)
chr6 (72-175)||(25089152-25089255)
chr6 (72-175)||(10588047-10588150)
chr6 (15-59)||(13536647-13536691)
chr6 (73-175)||(10862013-10862115)
chr6 (119-176)||(21222690-21222747)
chr6 (5-73)||(19295415-19295483)
chr6 (21-59)||(10588019-10588057)
chr6 (19-73)||(26705119-26705173)
chr6 (81-175)||(28752242-28752336)
chr6 (15-59)||(12651230-12651274)
[»] chr4 (48 HSPs)
chr4 (5-179)||(10757566-10757740)
chr4 (5-179)||(10970737-10970911)
chr4 (20-184)||(22017873-22018037)
chr4 (5-176)||(18830574-18830744)
chr4 (2-179)||(2063252-2063429)
chr4 (18-179)||(37694896-37695057)
chr4 (15-179)||(5448315-5448479)
chr4 (6-179)||(5324679-5324852)
chr4 (5-179)||(30470814-30470988)
chr4 (5-178)||(2634021-2634194)
chr4 (15-179)||(2232368-2232531)
chr4 (5-177)||(18836278-18836448)
chr4 (4-175)||(9826740-9826911)
chr4 (2-175)||(30378848-30379017)
chr4 (19-176)||(11821846-11822007)
chr4 (56-176)||(47463813-47463933)
chr4 (15-177)||(18500717-18500878)
chr4 (5-142)||(10380633-10380765)
chr4 (15-179)||(12140663-12140827)
chr4 (5-168)||(1387286-1387448)
chr4 (20-137)||(8951058-8951175)
chr4 (72-175)||(30470994-30471097)
chr4 (72-175)||(5448196-5448299)
chr4 (72-175)||(22018026-22018129)
chr4 (72-175)||(55382732-55382835)
chr4 (17-60)||(55382671-55382714)
chr4 (93-177)||(55382576-55382660)
chr4 (92-175)||(1387539-1387622)
chr4 (72-175)||(2634200-2634303)
chr4 (18-97)||(47943526-47943605)
chr4 (72-175)||(47943624-47943727)
chr4 (70-144)||(3391181-3391255)
chr4 (5-73)||(1387444-1387512)
chr4 (15-59)||(3370052-3370096)
chr4 (13-73)||(5448281-5448341)
chr4 (15-59)||(18836426-18836470)
chr4 (6-78)||(29908967-29909039)
chr4 (123-175)||(47463916-47463968)
chr4 (2-73)||(2634158-2634229)
chr4 (72-175)||(29908889-29908992)
chr4 (72-171)||(37695108-37695207)
chr4 (27-73)||(10757704-10757750)
chr4 (27-73)||(10970875-10970921)
chr4 (73-139)||(30378778-30378844)
chr4 (20-73)||(18830708-18830761)
chr4 (2-59)||(30378816-30378873)
chr4 (15-59)||(10380743-10380787)
chr4 (21-73)||(18500691-18500743)
[»] chr1 (14 HSPs)
chr1 (5-179)||(50335550-50335724)
chr1 (6-179)||(37608082-37608254)
chr1 (2-175)||(13735551-13735723)
chr1 (38-167)||(11633272-11633401)
chr1 (6-176)||(8097714-8097884)
chr1 (4-179)||(42847135-42847301)
chr1 (72-175)||(50335441-50335544)
chr1 (70-179)||(32373982-32374090)
chr1 (5-49)||(32374092-32374136)
chr1 (72-165)||(37607982-37608075)
chr1 (20-73)||(50335533-50335586)
chr1 (15-59)||(13735532-13735576)
chr1 (133-175)||(13735422-13735464)
chr1 (15-59)||(37608059-37608103)
[»] scaffold0011 (1 HSPs)
scaffold0011 (5-180)||(190173-190348)
[»] chr5 (23 HSPs)
chr5 (5-179)||(10760004-10760177)
chr5 (17-173)||(21211419-21211575)
chr5 (20-178)||(17497119-17497277)
chr5 (6-179)||(2555549-2555722)
chr5 (15-179)||(13753225-13753389)
chr5 (4-175)||(19491780-19491951)
chr5 (20-177)||(21943741-21943898)
chr5 (5-179)||(30100610-30100781)
chr5 (6-179)||(20429873-20430046)
chr5 (6-179)||(31912192-31912365)
chr5 (15-117)||(19564713-19564815)
chr5 (5-107)||(30852688-30852790)
chr5 (19-101)||(34419603-34419685)
chr5 (2-97)||(11298065-11298160)
chr5 (117-176)||(34419672-34419731)
chr5 (72-177)||(43548948-43549053)
chr5 (72-175)||(13753405-13753508)
chr5 (72-173)||(10760183-10760284)
chr5 (23-73)||(10760141-10760191)
chr5 (5-117)||(32539326-32539437)
chr5 (13-59)||(30852664-30852710)
chr5 (122-175)||(30852586-30852639)
chr5 (15-59)||(11298046-11298090)
[»] scaffold0049 (2 HSPs)
scaffold0049 (25-169)||(59711-59855)
scaffold0049 (5-41)||(59807-59843)
[»] scaffold1300 (1 HSPs)
scaffold1300 (2-175)||(1456-1629)
[»] scaffold0407 (4 HSPs)
scaffold0407 (5-179)||(832-1005)
scaffold0407 (5-179)||(7296-7469)
scaffold0407 (19-73)||(969-1023)
scaffold0407 (19-73)||(7433-7487)
[»] scaffold0039 (1 HSPs)
scaffold0039 (5-178)||(27486-27659)
[»] scaffold0026 (1 HSPs)
scaffold0026 (4-175)||(57557-57728)
[»] scaffold0102 (3 HSPs)
scaffold0102 (5-177)||(24001-24172)
scaffold0102 (72-101)||(23998-24027)
scaffold0102 (19-59)||(23983-24023)
[»] scaffold0024 (1 HSPs)
scaffold0024 (4-175)||(127912-128083)
[»] scaffold0018 (2 HSPs)
scaffold0018 (92-177)||(72107-72192)
scaffold0018 (22-131)||(72008-72117)
[»] scaffold0003 (2 HSPs)
scaffold0003 (5-95)||(314187-314277)
scaffold0003 (15-73)||(314165-314223)
[»] scaffold0047 (2 HSPs)
scaffold0047 (20-179)||(11697-11854)
scaffold0047 (72-175)||(11606-11708)
[»] scaffold0066 (3 HSPs)
scaffold0066 (72-175)||(15365-15468)
scaffold0066 (1-174)||(15470-15638)
scaffold0066 (2-56)||(15439-15493)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 22469602 - 22469379
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    ||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  22469602 ctgaattcaaactccattagtcaatttagtccctgaat-taaactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggactg 22469504  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattcccgtatatctagtgatgttgagcatct 204  Q
    |||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22469503 ttttgcaatttctctacattcaggaacgaaagtggctactcctttcccattcagggattaaagtgactaattcccgtatatctagtgatgttgagcatct 22469404  T
Q  205 ggccctccaggggacactctctctg 229  Q
    |||||||||||||||||||||||||    
T  22469403 ggccctccaggggacactctctctg 22469379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 30 - 179
Target Start/End: Complemental strand, 12107012 - 12106863
Alignment:
Q  30 ttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcaggg 129  Q
    ||||||||| |||||||||| |||| ||||| ||| ||||||||||||||||||||||||| ||| |||||| |||||| |||||||||| |||||||||    
T  12107012 ttagtccctaaatgtagactgcgttcgtcactttagtccctgaaattgaccaacagagtctacatccagggactgttttgcaatttctctgcattcaggg 12106913  T
Q  130 acgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    || ||||||||||||| |||||||||||||||||||||||||||||||||    
T  12106912 actaaagtgactactcatttcccattcagggactaaagtgactaattccc 12106863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 25149411 - 25149238
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcaggga 101  Q
    ||||||||| || |||| ||||||||| |||||||||||| |||||| ||||| ||||| ||| ||| ||||||||||||||||||||| ||||||||||    
T  25149411 tctctgaatgcagactctgttagtcaagttagtccctgaacgtagacaccgttcgtcactttagtccttgaaattgaccaacagagtctacattcaggga 25149312  T
Q  102 atgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
     |||||| |||||||| | ||||||||||  ||||||||||||| ||| |||||||||||||||| ||||||||    
T  25149311 ctgttttgcaatttctttgcattcagggattaaagtgactactctttttccattcagggactaaaatgactaat 25149238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 21124478 - 21124642
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||||||||||||||||||||||  | ||||||||||||||| ||| ||| ||| | ||||||||||||||||||| |||||| ||| |||||| |||||    
T  21124478 actccgttagtcaatttagtcccctagtgtagactccgttagccactttagtccataaaattgaccaacagagtctacattcaaggactgttttgcaatt 21124577  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||||||||||||| |  |||||||||||||||||| |||||| | |||||||||||||||||||    
T  21124578 tctctacattcaggaattaaagtgactactcctttctcattcaagaactaaagtgactaattccc 21124642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 23976261 - 23976086
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||||||| |||||||||| |||||||||||||    ||||||||| ||| |||||||||||||| |||||||||| |||||||||| ||    
T  23976261 ctgaatgcagactccgttggtcaatttagcccctgaatgtagatcatgttagtcactttactccctgaaattgactaacagagtctacattcagggactg 23976162  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactac-tcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||||||| |||||||| || ||||||||||| || ||| ||||||| |||||||||||||||||||||    
T  23976161 ttttgcaatttctctgcattcaggaactaaagtgactacttctttttccattcaaggactaaagtgactaattccc 23976086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 18324106 - 18324280
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||| | | |||||||||||| |||||||  |||||| ||| ||    
T  18324106 ctgaatgcaaactccgttagtcaatttagtccttaaatgtagactccgttagtcactttagttcatgaaattgaccagcagagtcgacattcatggactg 18324205  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||||||| ||||||||||| ||| |||||||  ||||| |||||||||| |||| ||| ||||||||    
T  18324206 ttttgcaatttctctgcattcagggactaaaatgactacgtctttctcattcagggattaaaatgattaattccc 18324280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 21185794 - 21185945
Alignment:
Q  28 atttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcag 127  Q
    ||||||| |||||||||| |||| ||||||||| ||| ||| |||||||||||||||||||||  ||| |||||| ||||| |||||| ||  |||||||    
T  21185794 atttagtacctgaatgtacactcagttagtcactttagtccatgaaattgaccaacagagtctatatttagggaacgtttttcaatttttcagcattcag 21185893  T
Q  128 ggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| ||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  21185894 ggactaaagtgactactcatttctcattcagcgactaaagtgactaattccc 21185945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 4289080 - 4288918
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaac---agagtctgcattcagggaatgttttacaatttc 116  Q
    |||| |||||||||||  ||||||||||||| ||||||||| |||||||||||||||||| ||    ||||||| |||||  |||||||||| |||||||    
T  4289080 gttaatcaatttagtctttgaatgtagactctgttagtcactttaatccctgaaattgactaattaaagagtctacattcgaggaatgttttgcaatttc 4288981  T
Q  117 tctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||||||||| | || ||||||||||||  ||| ||| |||||||||||| ||||||||||||    
T  4288980 tctacattcatgaactaaagtgactactttttttccaatcagggactaaaatgactaattccc 4288918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 35202722 - 35202845
Alignment:
Q  20 gttagtcaatttagtccc-tgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctc 118  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||||||||||||||   |||||||||| |||||| |||||||||    
T  35202722 gttagtcaatttagtcccctgaatgtagactccgttagtcactttagttcctgaaattgaccaacagagtaaacattcagggactgttttgcaatttctc 35202821  T
Q  119 tacattcagggacgaaagtgacta 142  Q
    | |||||||| || ||||||||||    
T  35202822 tgcattcaggaactaaagtgacta 35202845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 37494464 - 37494325
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctct 119  Q
    |||||||||||||||||||||||| ||||| | |||||||  | | ||||| ||||||||||||||||||       || || |||||||||||||||||    
T  37494464 gttagtcaatttagtccctgaatgcagacttcattagtcaattcactccctaaaattgaccaacagagtca------agagattgttttacaatttctct 37494371  T
Q  120 acattcagggacgaaagtgactactcctttcccattcagggactaa 165  Q
     ||||||||||| ||||||||||||  ||||| |||||||||||||    
T  37494370 gcattcagggactaaagtgactacttatttcctattcagggactaa 37494325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 31254013 - 31254180
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||| ||||||||||||||||||| |||||||| |  ||||||||| ||||||||||||||| |||||| |||||| |||||| |||       
T  31254013 ctgaatgcagactctgttagtcaatttagtccctaaatgtagattttgttagtcactttaatccctgaaattaaccaacggagtctacattcaagga--- 31254109  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
      ||||||||| ||| |||| || ||| ||||||   ||| |||||||||| |||||||||||| | ||||||||    
T  31254110 -cttacaatttttctgcatttagagactaaagtg---acttctttcccatttagggactaaagtaattaattccc 31254180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 179
Target Start/End: Original strand, 10289327 - 10289480
Alignment:
Q  25 tcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacatt 124  Q
    |||||||||||  |||||| | ||| |||||||||| |||  || | ||||||||||  ||||||| |||||||| | ||||||||||||||||| ||||    
T  10289327 tcaatttagtctttgaatgcaaacttcgttagtcactttagcccttaaaattgaccactagagtctacattcaggaactgttttacaatttctctgcatt 10289426  T
Q  125 cagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
     ||| ||  |||||||||||| ||| ||||| ||||| |||||||||||||||||    
T  10289427 taggaac-taagtgactactcattttccatttagggattaaagtgactaattccc 10289480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 179
Target Start/End: Original strand, 23625105 - 23625253
Alignment:
Q  31 tagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcaggga 130  Q
    |||| |||||||| |||||| ||| ||||  ||| ||||||||||||| ||||  ||||| |||||||| | ||||||||||||||||| ||  ||  ||    
T  23625105 tagtacctgaatgcagactctgttggtcaatttagtccctgaaattgatcaacgcagtctacattcaggaagtgttttacaatttctctgcacccaaaga 23625204  T
Q  131 cgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
      ||||||||||||  ||||| |||||| ||||||||||||||||||||    
T  23625205 ttaaagtgactacttttttcctattcagagactaaagtgactaattccc 23625253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 22326579 - 22326454
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcaggga 101  Q
    ||||||||| || | | |||||| | ||||||| |||||||||||| ||||||| |||| ||| ||||| ||||||||||| ||||||| |||||| |||    
T  22326579 tctctgaatgcagatttcgttagcctatttagttcctgaatgtagattccgttaatcactttagtccctaaaattgaccaatagagtctacattcaagga 22326480  T
Q  102 atgttttacaatttctctacattcag 127  Q
     | ||||||||||||||  |||||||    
T  22326479 ctattttacaatttctcagcattcag 22326454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 81 - 179
Target Start/End: Original strand, 12107020 - 12107118
Alignment:
Q  81 aacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||||||||| |||||||||| | |||| |||||| ||| |||||| |||| |||||||| ||| |||||| ||| || ||||||||||||||||||||    
T  12107020 aacagagtctacattcagggattattttgcaatttatctgcattcaaggactaaagtgacgacttctttcctatttagagactaaagtgactaattccc 12107118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 37543950 - 37543803
Alignment:
Q  17 tccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttc 116  Q
    ||||||||| |||||||||||||||| |||||||||||| |||| ||| ||| ||||||||||||| | ||| | |||||| | | | |||| |||||||    
T  37543950 tccgttagttaatttagtccctgaatatagactccgttaatcactttagtccatgaaattgaccaataaagtttacattcatgaactattttgcaatttc 37543851  T
Q  117 tctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgacta 173  Q
     ||         ||| ||||||||||||| ||| |||||||| ||||||||||||||    
T  37543850 act---------gactaaagtgactactcattttccattcagagactaaagtgacta 37543803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 176
Target Start/End: Complemental strand, 21184381 - 21184298
Alignment:
Q  93 attcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaatt 176  Q
    ||||||||| | |||| |||||| ||| ||||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||||    
T  21184381 attcagggactattttgcaatttatctgcattcggggactagagtgacgactcatttcctattcagggactaaagtgactaatt 21184298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 22426949 - 22426847
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| ||||||| || |||||||||| | |||| |||||| ||  |||||| |||| |||||||  |||| ||||| |||||||||||||||||||    
T  22426949 aaattgactaacagagactacattcagggactattttgcaatttatcg-cattcatggactaaagtgatgactcgtttcctattcagggactaaagtgac 22426851  T
Q  172 taat 175  Q
    ||||    
T  22426850 taat 22426847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 25149414 - 25149517
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||| ||||| ||||||| || | |||| || ||| ||| ||||||| ||| | |||||| |||| ||||| |||||||||||||||||||    
T  25149414 aaattgactaacaaagtctacattcagagattattttgcagtttatctgcattcagagactatagtgacgactcatttcctattcagggactaaagtgac 25149513  T
Q  172 taat 175  Q
    ||||    
T  25149514 taat 25149517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 37543968 - 37544072
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||| ||||| || |||  || | |||| |||||| ||||||||||||||| ||| || | ||| |||||  |||||||||||||||||||    
T  37543968 aaattgactaacaaagtctacaatcaatgactattttgcaatttatctacattcagggactaaaatggcgacttctttcatattcagggactaaagtgac 37544067  T
Q  172 taatt 176  Q
    |||||    
T  37544068 taatt 37544072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 23976267 - 23976368
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| ||||||| || |||||||||| | ||||||||||| |||||||||||| || ||| |||| |||| ||||  ||| | |||||||||||||    
T  23976267 aaattgactaacagag-ctacattcagggactattttacaatttatctacattcaggaactaaaatgacgactcatttcttattga-ggactaaagtgac 23976364  T
Q  172 taat 175  Q
    ||||    
T  23976365 taat 23976368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 21124430 - 21124335
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaag 167  Q
    |||||||| || ||||||| |||| || || | |||| |||||| |||  |||||| ||| ||||||||  ||||||||| |||||||||||||||    
T  21124430 aaattgactaatagagtctacatttagagactattttgcaatttatctgtattcagagactaaagtgacgtctcctttcctattcagggactaaag 21124335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 22469608 - 22469711
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||| ||| ||||| || | | ||||||||||| ||| |||| | |||| |||||||| |||| ||||  |||||  ||||||||||||    
T  22469608 aaattgactaacagaatctacattctggaactattttacaatttatctgcatttaaggactaaagtgacgactcatttcttattcatagactaaagtgac 22469707  T
Q  172 taat 175  Q
    ||||    
T  22469708 taat 22469711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 23625137 - 23625070
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtga 139  Q
    |||||||||||||||||||||||||||| | | ||||||||| | | |  |||||||||| |||||||    
T  23625137 aaattgaccaacagagtctgcattcaggtactattttacaatctatttgtattcagggactaaagtga 23625070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 31253996 - 31254035
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  31253996 gttagtcaatttagtccctgaatgcagactctgttagtca 31254035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 21124420 - 21124458
Alignment:
Q  21 ttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  21124420 ttagtcaatttagtccctgaatgcagacttcgttagtca 21124458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 21124436 - 21124490
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||||| || ||| |||||||||||||||||||  | ||||||||||||||||||    
T  21124436 ctgaatgcagacttcgttagtcaatttagtcccctagtgtagactccgttagtca 21124490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 24609174 - 24609093
Alignment:
Q  27 aatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgtttt 108  Q
    ||||||||| ||||||||||||||  |||||| | |||||| || ||| | ||||||| | ||| |||||||||| ||||||    
T  24609174 aatttagtctctgaatgtagactcaattagtcgctttaatctctaaaaattaccaacataatctacattcagggactgtttt 24609093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 25149425 - 25149372
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||||||||||||||| ||||||| |||||| ||||||||  ||| ||||||||    
T  25149425 gttagtcaatttagtctctgaatgcagactctgttagtcaagttagtccctgaa 25149372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 29585605 - 29585576
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagact 49  Q
    ||||||||||||||||||||||||||||||    
T  29585605 gttagtcaatttagtccctgaatgtagact 29585576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 27508685 - 27508859
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||||| |||||||||| ||    
T  27508685 ctgaatgcagactctgttagtcaatttagtccctgaatgtagactccgttagtcactttagtccatgaaattgactaacagagtctacattcagggactg 27508784  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  27508785 ttttgcaatttctctacgttcagggactaaagtgactactccttttccattcagggattaaagtgactaattccc 27508859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 14197629 - 14197457
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||||||||||||||||||||| || ||||||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||   || ||    
T  14197629 ctgaatgcagactccgttagtcaatttagtctctcaatgtagactccgttagtcactttagtccctgaaattgaccaacagaatctacattcgatgactg 14197530  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattc 177  Q
    |||| |||||||||| |||| |||||| ||||||||||||  ||||||||| ||| |||||||||| ||||||    
T  14197529 ttttgcaatttctctgcatttagggactaaagtgactacttttttcccattgaggaactaaagtgattaattc 14197457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 36150935 - 36151098
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||  ||| ||| ||||||||||||||| ||||| |||||||| | |||||| |||||    
T  36150935 actctgttagtcaatttagtctctgaatgtaaactccgttagtcattttagtccttgaaattgaccaacaaagtctacattcaggtactgttttgcaatt 36151034  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattcc 178  Q
    |||| ||||||| |||  ||||||||||||| ||| |||| |||||||||||||||||||||||    
T  36151035 tctcaacattcaaggattaaagtgactactcattttccatccagggactaaagtgactaattcc 36151098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 45013018 - 45012848
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||||||||||||||||| || |||||||||||||||| || |||| ||| ||||||||||||||||| ||||||| ||||  | || ||    
T  45013018 ctgaatgcagactccgttagtcaatttaatctctgaatgtagactccgctaatcactttagtccctgaaattgaccaatagagtctacatt-tgagattg 45012920  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaatt 176  Q
    |||| |||||||| | ||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||    
T  45012919 ttttgcaatttctttgcattcagagactaaagtgactactcctttcccattcagggaccaaagtgactaatt 45012848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 173
Target Start/End: Complemental strand, 5080279 - 5080111
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||||||||| |||||||||| |||||||||||||||||||| |||  ||| ||| |||||||||| |||||||||| ||||||  || ||    
T  5080279 ctgaatgcagactccgttaatcaatttagtacctgaatgtagactccgttaatcattttagtccttgaaattgactaacagagtctacattcaaagactg 5080180  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgacta 173  Q
    |||| || ||||||| |||||||| || ||||||||||||  |||||||||||||||||||||||||||    
T  5080179 ttttgcattttctctgcattcaggaactaaagtgactacttttttcccattcagggactaaagtgacta 5080111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 38761152 - 38760990
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||| |||||||||||||||||||||||| |||||| ||||||||| ||| ||||  ||||||| ||||||||||| ||| || ||| |||||| |||||    
T  38761152 actctgttagtcaatttagtccctgaatgcagactctgttagtcactttagtcccaaaaattgatcaacagagtctacatcca-ggactgttttgcaatt 38761054  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||||||||||| | || |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  38761053 tctctacattcacgaactaaagtgactacttctttcccattcagggactaaa-tgactaattccc 38760990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 178
Target Start/End: Original strand, 15000765 - 15000928
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||||| ||||||||||||||||| ||||||||||||||| | ||| ||| ||||||||||||||||| | ||||| |||| ||||| |||||| |||||    
T  15000765 actccgatagtcaatttagtcccttaatgtagactccgttggacactttagtccctgaaattgaccaataaagtctacatttagggactgttttgcaatt 15000864  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattcc 178  Q
     |||| ||| ||  ||| ||||||||||||| ||||||||||||||||||||||| ||||||||    
T  15000865 cctctgcatccaaagactaaagtgactactcatttcccattcagggactaaagtggctaattcc 15000928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 43257424 - 43257261
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||| ||||||||||||||||||| |||||||||| |||||||||  ||| ||||||||||||||||||| | ||| ||||||| || | ||||||||||    
T  43257424 actctgttagtcaatttagtccctaaatgtagacttcgttagtcaatttactccctgaaattgaccaacaaaatctacattcagagactcttttacaatt 43257325  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattcc 178  Q
    ||| | ||||||||||| || ||||||| || ||| ||||||||||| ||||||||||||||||    
T  43257324 tctatgcattcagggactaaggtgactattcattttccattcagggattaaagtgactaattcc 43257261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 178
Target Start/End: Complemental strand, 15272432 - 15272320
Alignment:
Q  66 tccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaa 165  Q
    ||||||||||||||||||| ||||| |||||||||| | |||| |||||||||| ||||||||||| ||| ||||||||| |||| |||||| |||||||    
T  15272432 tccctgaaattgaccaacaaagtctacattcagggactattttgcaatttctctgcattcagggactaaaatgactactcatttctcattcacggactaa 15272333  T
Q  166 agtgactaattcc 178  Q
    ||||||| |||||    
T  15272332 agtgactcattcc 15272320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 6441514 - 6441378
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||| |||||||||||||||| || ||||||||||||||||||||| ||  ||| |||||||||| || ||||||| |||||||||| ||    
T  6441514 ctgaatgcagactctgttagtcaatttagtctctaaatgtagactccgttagtcacttttgtccttgaaattgactaa-agagtctacattcagggactg 6441416  T
Q  105 ttttacaatttctctacattcagggacgaaagtgacta 142  Q
    |||| |||||||| | ||||||||||| | ||||||||    
T  6441415 ttttgcaatttctttgcattcagggactatagtgacta 6441378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 3404581 - 3404735
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctct 119  Q
    ||||||||||||||||||||| |||||  ||| |||||||| ||| |  |||| |||||| ||| |||||| |||||| ||| | |||| ||||||||||    
T  3404581 gttagtcaatttagtccctgagtgtagt-tccattagtcactttagtttctgatattgactaaccgagtctacattcaaggactattttgcaatttctct 3404679  T
Q  120 acattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
     ||||||||| | ||||||||||||| ||| ||||| ||| |||||||||||||||    
T  3404680 gcattcagggcctaaagtgactactctttttccatttaggaactaaagtgactaat 3404735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 27508679 - 27508577
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||| ||||| |||||||||| | |||| |||||| ||| ||||||||||| |||||||  |||| ||||| ||||||||||| |||||||    
T  27508679 aaattgactaacatagtctacattcagggactattttgcaatttatctgcattcagggactaaagtgatgactcatttcctattcagggact-aagtgac 27508581  T
Q  172 taat 175  Q
    ||||    
T  27508580 taat 27508577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 38761168 - 38761271
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||  |||| ||||| |||||||||| | |||| |||||| ||| ||||||||||| |||||||  |||| ||||| ||||||||||||||||||     
T  38761168 aaattgattaacaaagtctacattcagggactattttgcaatttatctgcattcagggactaaagtgatgactcatttcctattcagggactaaagtgat 38761267  T
Q  172 taat 175  Q
    ||||    
T  38761268 taat 38761271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 37787857 - 37787707
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||| ||||||||||||||||  ||||||||||||||| ||||||  ||||||  | |||||||| |||| | | |  |||||| || ||    
T  37787857 ctgaatgcatactctgttagtcaatttagtcgttgaatgtagactccgctagtcattttaatctttaaaattgacaaacaaaatttatattcagagactg 37787758  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccatt 155  Q
    ||||||||| |  ||  |||||||||| |||| |||||||| ||| |||||    
T  37787757 ttttacaatcttcctgtattcagggactaaagggactactctttttccatt 37787707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 45013035 - 45012982
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||||||||||||||||||||||| |||||||||||||||  |||||| |||||    
T  45013035 gttagtcaatttagtccctgaatgcagactccgttagtcaatttaatctctgaa 45012982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 5080305 - 5080389
Alignment:
Q  92 cattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaatt 176  Q
    ||||||| || | ||||||||||| ||| ||||||||||| ||| | || ||| |||||| |||||| |||||||||||||||||    
T  5080305 cattcagagactattttacaatttatctgcattcagggactaaaataacgacttctttcctattcagagactaaagtgactaatt 5080389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 15000721 - 15000645
Alignment:
Q  100 gaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcaggga-ctaaagtgactaat 175  Q
    |||| |||| |||||| ||| ||||||||||| |||||||| | |||||||| ||||||||| ||||||||||||||    
T  15000721 gaatattttgcaatttatctgcattcagggactaaagtgacaattcctttcctattcagggacctaaagtgactaat 15000645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 27508668 - 27508721
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||||||||||||||||||||||| |||||| ||||||||  ||| ||||||||    
T  27508668 gttagtcaatttagtccctgaatgcagactctgttagtcaatttagtccctgaa 27508721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 14197651 - 14197607
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||| ||||||||||||| |||||||||| |||||||||||||||    
T  14197651 actctgttagtcaatttaatccctgaatgcagactccgttagtca 14197607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 6441531 - 6441492
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  6441531 gttagtcaatttagtccctgaatgcagactctgttagtca 6441492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 14197672 - 14197625
Alignment:
Q  26 caatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||| |||||||||||||||||||| ||||||||  ||||||||||||    
T  14197672 caatatagtccctgaatgtagactctgttagtcaatttaatccctgaa 14197625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 36150951 - 36150848
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||||||| |||  ||||| | |||| |||||| ||| |||||| |||   ||||||| |||| ||||| ||| | |||||||||||||    
T  36150951 aaattgactaacagagtctacatctagggattattttgcaatttatctgcattcatggatttaagtgacgactcatttcctatttatggactaaagtgac 36150852  T
Q  172 taat 175  Q
    ||||    
T  36150851 taat 36150848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 5080295 - 5080261
Alignment:
Q  21 ttagtcaatttagtccctgaatgtagactccgtta 55  Q
    ||||||||||||||||||||||| |||||||||||    
T  5080295 ttagtcaatttagtccctgaatgcagactccgtta 5080261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 15031339 - 15031503
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||| |||||  ||| ||||| |||||| |||||    
T  15031339 actccgttagtcaatttagtcactgaatgtagactccgttagtcactttagtccctgaaattgaccaacaaagtctagatttagggactgttttgcaatt 15031438  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||||| ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  15031439 tctctgcattcagagactaaagtgactactcatttcccattcagggactaaagtgactaattccc 15031503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 15 - 176
Target Start/End: Complemental strand, 26498708 - 26498547
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||| |||||||||||||||| ||||||| | |||||||||||||| ||| |||||||||||||||||||  |||| |||||||||| |||||| |||||    
T  26498708 actcggttagtcaatttagtcactgaatgcatactccgttagtcactttagtccctgaaattgaccaacatggtctacattcagggactgttttgcaatt 26498609  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaatt 176  Q
    ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  26498608 tctctgcattcagggactaaagtgactactcttttcccattcagggactaaagtgactaatt 26498547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 11989215 - 11989045
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||||||||| |||||||||||| | ||||||||||||||||| ||| ||| || ||||||||||||||||||||||  ||||||||| ||    
T  11989215 ctgaatgcagactccgttaatcaatttagtccttaaatgtagactccgttagccactttagtctctgaaattgaccaacagagtctatattcagggactg 11989116  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    |||| |||||||||| ||||||| ||| |||||||||||| ||||||| ||||||||| ||||||||||||    
T  11989115 ttttgcaatttctctgcattcagagactaaagtgactacttctttccctttcagggacaaaagtgactaat 11989045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 38498227 - 38498386
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctct 119  Q
    |||||||||||||||||||||||||||||||  |||||||| ||| ||||| ||||| || |||| ||||| ||||||| || | |||| |||||||| |    
T  38498227 gttagtcaatttagtccctgaatgtagactctattagtcactttagtccctaaaattaactaacaaagtctacattcagagactattttgcaatttctat 38498326  T
Q  120 acattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
     ||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||    
T  38498327 gcattcagggactaaagtgactactcctttctcattcagggattaaagtgactaattccc 38498386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 21514867 - 21515027
Alignment:
Q  19 cgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctc 118  Q
    |||||||||||||||||| ||||||| ||||| |||||| || ||||||| ||||||||||||| | ||||| |||||||||| ||||||  ||||| ||    
T  21514867 cgttagtcaatttagtccttgaatgtggactctgttagttactttaatccatgaaattgaccaatatagtctacattcagggactgttttgaaatttatc 21514966  T
Q  119 tacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||||||| |||| ||| ||||||||| ||||| |||||||||| ||||||||||||||||    
T  21514967 tacattcaaggactaaaatgactactcatttccaattcagggacaaaagtgactaattccc 21515027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 48755436 - 48755574
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactcc-gttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaat 103  Q
    |||||| || |||||||||||||||||||||| |||||||||||||  ||||||||| || | |||||||||||||||||||||||| |||||||| | |    
T  48755436 ctgaatgcagactccgttagtcaatttagtccatgaatgtagactcgtgttagtcactttgacccctgaaattgaccaacagagtctacattcaggaact 48755535  T
Q  104 gttttacaatttctctacattcagggacgaaagtgacta 142  Q
    ||||| |||||||||| ||||||||||| ||||||||||    
T  48755536 gttttgcaatttctctgcattcagggactaaagtgacta 48755574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 15005067 - 15005241
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||| |||||| |||||||||| |||||||| |||  ||||||||| | ||||||||||||||||| ||||||||| |||||||  | ||    
T  15005067 ctgaatgcagactcagttagttaatttagtccttgaatgtatactttgttagtcacttaaatccctgaaattgaccgacagagtctacattcagaaactg 15005166  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||||||| ||||||| ||| |||||||| | || || |||||||| ||| |||||||||||||||||    
T  15005167 ttttgcaatttctctgcattcagagactaaagtgaccagtcattacccattcaaggattaaagtgactaattccc 15005241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 33343114 - 33343287
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| ||||||  ||||||||||||||||||||||||||||||  |||| |||  ||| | ||||||||||||||||||||| |  ||||| ||| ||    
T  33343114 ctgaatgcaaactatgttagtcaatttagtccctgaatgtagactttgttaatcat-ttagttcctgaaattgaccaacagagtttatattcaaggactg 33343212  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||||||| |||||||  || ||| || |||||| ||||||||||||||| |||||||||||||||||    
T  33343213 ttttgcaatttctctgcattcagtaactaaaatgtctactcatttcccattcagggattaaagtgactaattccc 33343287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 14434810 - 14434641
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| ||||||| | |||| ||||||||| |||||||||||||||| ||||||| ||| ||||||||||| || |||| ||||| |||||| ||| ||    
T  14434810 ctgaatgcaaactcagatagttaatttagtctctgaatgtagactccgctagtcactttagtccctgaaattaactaacaaagtctacattcaaggactg 14434711  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaa 174  Q
    |||| |||| ||||| |||| | |||| |||||||||| || ||||||||||| ||| ||||||||||||    
T  14434710 ttttgcaatatctctgcatttacggactaaagtgactattcatttcccattcatggattaaagtgactaa 14434641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 21 - 178
Target Start/End: Original strand, 20759052 - 20759209
Alignment:
Q  21 ttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctcta 120  Q
    ||||||||||||||||||||   ||||||  ||||||||| ||| |||||||||||||| |||| ||||| |||||| ||| | |||| ||||||||||     
T  20759052 ttagtcaatttagtccctgagaatagactatgttagtcactttagtccctgaaattgactaacaaagtctacattcaaggactattttgcaatttctctg 20759151  T
Q  121 cattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattcc 178  Q
    |||||| |||| ||| |||||||||||||| |||||||||||||||  ||||||||||    
T  20759152 cattcaaggactaaaatgactactcctttctcattcagggactaaaacgactaattcc 20759209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 175
Target Start/End: Complemental strand, 18445576 - 18445405
Alignment:
Q  4 tctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaat 103  Q
    ||||||| || ||| ||||| |||||||| |||| |||| ||||||| ||||||||| ||||||| |||||||||| |||||||||| | |||| | | |    
T  18445576 tctgaatgcagacttcgttaatcaatttaatcccagaatttagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcact 18445477  T
Q  104 gttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    ||||| |||||||||| |||||| | ||  |||||||||||| ||||  ||||||| |||||||||||||||    
T  18445476 gttttgcaatttctctgcattcaagtacttaagtgactactcttttctgattcaggaactaaagtgactaat 18445405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 142
Target Start/End: Original strand, 44967980 - 44968100
Alignment:
Q  21 ttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctcta 120  Q
    |||||||||||||||  |||||||||||||  |||||||| ||||||||||||||||||||||| ||||| |||| ||||| |||||| |||||| ||||    
T  44967980 ttagtcaatttagtctttgaatgtagactctcttagtcactttaatccctgaaattgaccaacaaagtctacatttagggactgttttgcaatttatcta 44968079  T
Q  121 cattcagggacgaaagtgacta 142  Q
    |||||| |||| ||||||||||    
T  44968080 cattca-ggactaaagtgacta 44968100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 175
Target Start/End: Complemental strand, 41985049 - 41984905
Alignment:
Q  31 tagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcaggga 130  Q
    |||||||||||| ||||||| ||||||||| ||||||| |||||||||| |||||||||| | |||| | | |||||| |||||||||| |||||| | |    
T  41985049 tagtccctgaatttagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcactgttttgcaatttctctgcattcaagta 41984950  T
Q  131 cgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    |  |||||||||||| ||||  ||||||| |||||||||||||||    
T  41984949 cttaagtgactactcttttcttattcaggaactaaagtgactaat 41984905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 39541745 - 39541872
Alignment:
Q  31 tagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcaggga 130  Q
    |||||||||||| |||| |  ||||||||| ||  ||| | ||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||||||    
T  39541745 tagtccctgaatatagattatgttagtcacttttgtccttaaaattgaccaacagagtctacattcagagactgttttacaatttctctgcattcaggga 39541844  T
Q  131 cgaaagtgactactcctttcccattcag 158  Q
    | |||||||||||| |||| | ||||||    
T  39541845 ctaaagtgactacttcttttctattcag 39541872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 130
Target Start/End: Original strand, 1426593 - 1426709
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||||||||||||||||||||||| ||||||||||||||||||||         |||||||||||||||| ||||| ||||||| || ||    
T  1426593 ctgaatgcagactccgttagtcaatttagtccctaaatgtagactccgttagtca---------ctgaaattgaccaacaaagtctacattcagtgactg 1426683  T
Q  105 ttttacaatttctctacattcaggga 130  Q
    |||| |||||||||| ||||||||||    
T  1426684 ttttgcaatttctctgcattcaggga 1426709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 26920278 - 26920435
Alignment:
Q  19 cgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctc 118  Q
    |||||||||||||||||| | ||||||| |||| |||||||| ||||||||||||||||| ||||| ||| | |||||| | | |||||| |||||| ||    
T  26920278 cgttagtcaatttagtccttaaatgtaggctccattagtcactttaatccctgaaattgatcaacaaagtatacattcaagaactgttttgcaatttttc 26920377  T
Q  119 tacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaatt 176  Q
    | ||||||  ||| ||||| |||||| |||| | ||||||| | |||||| |||||||    
T  26920378 tgcattcatagactaaagtaactactacttttctattcaggaattaaagtcactaatt 26920435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 15031291 - 15031188
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||||||| |||||||||| | ||||||||||| ||| |||||| |||| |||||||| |||| ||||||||||| ||||||||||| |    
T  15031291 aaattgactaacagagtctacattcagggactattttacaatttatctgcattcaaggactaaagtgacgactcttttcccattcaaggactaaagtggc 15031192  T
Q  172 taat 175  Q
    ||||    
T  15031191 taat 15031188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 48755430 - 48755327
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||||||| |||||||||| | |||| ||| || ||| ||||||| ||| |||||||| |||||||||| |||||||||||||||||||    
T  48755430 aaattgactaacagagtctacattcagggactattttgcaacttatctgcattcagagactaaagtgacgactcctttcctattcagggactaaagtgac 48755331  T
Q  172 taat 175  Q
    ||||    
T  48755330 taat 48755327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 26840107 - 26840268
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgacc-aacagagtctgcattcagggaatgttttacaat 113  Q
    ||||||||||| |||||||||| ||||| || |||| ||||||||| ||||||| || |||| ||| ||||||||||  ||||||||| || ||| ||||    
T  26840107 actccgttagttaatttagtccttgaatataaactctgttagtcactttaatccatggaattaaccaaacagagtctatattcagggattgctttgcaat 26840206  T
Q  114 ttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattc 177  Q
    |||||| ||||||   || ||||||||| ||| |||| | ||||||||| ||| ||||||||||    
T  26840207 ttctctgcattca-aaactaaagtgactgctcatttctcgttcagggaccaaa-tgactaattc 26840268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 15031297 - 15031351
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  15031297 ctgaatgcaaactccgttagtcaatttagtcactgaatgtagactccgttagtca 15031351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 36383126 - 36383203
Alignment:
Q  24 gtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcaggga 101  Q
    |||||||||||| |||||| |||||| |||||||||| ||| ||||| |||||||| |||||||| ||||||||||||    
T  36383126 gtcaatttagtctctgaatatagacttcgttagtcactttagtccctaaaattgactaacagagtttgcattcaggga 36383203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 26498692 - 26498795
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| ||| |||||| |||||| ||| | |||| |||||| ||| ||||||||||| |||||||  |||| ||||| |||||| ||||||||||||    
T  26498692 aaattgactaaccgagtctacattcatggactattttgcaatttatctgcattcagggactaaagtgatgactcatttcctattcagagactaaagtgac 26498791  T
Q  172 taat 175  Q
    ||||    
T  26498792 taat 26498795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 33343108 - 33343006
Alignment:
Q  73 aattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgact 172  Q
    ||||||| |||| ||||| ||||||||||   |||  |||||| ||| ||||||||||| |||||||| |||| ||| | ||||||||||||||||||||    
T  33343108 aattgactaacatagtctacattcagggaccatttagcaatttatctgcattcagggactaaagtgacgactcattttctattcagggactaaagtgact 33343009  T
Q  173 aat 175  Q
    |||    
T  33343008 aat 33343006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 179
Target Start/End: Complemental strand, 43562754 - 43562605
Alignment:
Q  21 ttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctcta 120  Q
    |||||||||||| |||||||||||||||  |||||||||| ||| || || ||||||||            |||||| ||| |||||| ||||||||||     
T  43562754 ttagtcaatttaatccctgaatgtagacatcgttagtcactttagtctctaaaattgaca-----------cattcaaggactgttttgcaatttctctg 43562666  T
Q  121 cattcagggacgaaagtgac--tactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||||||  ||| ||| ||||  ||||| |||||||||||| ||||||||||||||||||||    
T  43562665 cattcaatgaccaaattgacattactcttttcccattcagagactaaagtgactaattccc 43562605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 48755414 - 48755458
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  48755414 actctgttagtcaatttagtccctgaatgcagactccgttagtca 48755458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 1426587 - 1426484
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||| | ||| |||||||| | | |||| |||||| ||| ||||||||  | |||||||| |||| ||||| |||||| ||||||||||||    
T  1426587 aaattgactaacataatctacattcaggaactattttgcaatttatctgcattcaggatctaaagtgacgactcatttcctattcagagactaaagtgac 1426488  T
Q  172 taat 175  Q
    ||||    
T  1426487 taat 1426484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 1426576 - 1426615
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  1426576 gttagtcaatttagtccctgaatgcagactccgttagtca 1426615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 21514847 - 21514744
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    ||||| || |||||||||| |||||| ||| | ||||||||||| |||  |||||||||| |||||||| ||| ||||   |||||  ||||||||||||    
T  21514847 aaattaactaacagagtctacattcaaggactattttacaatttatctgtattcagggactaaagtgacgacttcttttatattcaaagactaaagtgac 21514748  T
Q  172 taat 175  Q
    ||||    
T  21514747 taat 21514744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 7300206 - 7300140
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacaga 86  Q
    ||||||||||||| ||||| |||| |||||| ||||||||| ||| ||| |||| ||||||||||||    
T  7300206 gttagtcaatttaatccctaaatgcagactctgttagtcactttagtccttgaatttgaccaacaga 7300140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 15031275 - 15031319
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||| |||||||||||||||||||||||| | |||||||||||||    
T  15031275 actctgttagtcaatttagtccctgaatgcaaactccgttagtca 15031319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 42453146 - 42453043
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||||||| |||| ||||| | |||| |||||| | | ||||||  ||| |||||||| |||| ||| | ||||| ||| |||||||||    
T  42453146 aaattgactaacagagtctacatttagggactattttgcaatttatttgcattcatagactaaagtgacgactcattttctattcaaggattaaagtgac 42453047  T
Q  172 taat 175  Q
    ||||    
T  42453046 taat 42453043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 43562776 - 43562879
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||| ||| |||||| ||| | ||||||||||| ||| |||||||  || ||| |||| | || ||||| ||| |||||||||| ||||    
T  43562776 aaattgacaaacagaatctacattcaaggactattttacaatttatctgcattcagaaactaaaatgacgaatcatttcctattgagggactaaaatgac 43562875  T
Q  172 taat 175  Q
    ||||    
T  43562876 taat 43562879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 11989237 - 11989197
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgtta 55  Q
    |||| |||||||||| ||||||||||||| |||||||||||    
T  11989237 actctgttagtcaatctagtccctgaatgcagactccgtta 11989197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 2e-57; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 32092919 - 32092755
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| ||| | ||||| |||||| |||||||||| |||||||||| |||||| |||||    
T  32092919 actctgttagtcaatttagtccctgaatgtagacttcgttagtcactttagttcctgagattgacaaacagagtctacattcagggactgttttgcaatt 32092820  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  32092819 tctctgcattcagggactaaagtgactactcatttcccattcagggactaaagtgactaattccc 32092755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 22092969 - 22093143
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||||| || ||||||||||||||||||| ||||||||||| ||||| ||| |||||||| |||||||||||| ||| ||||||| || ||    
T  22092969 ctgaatgcagactccattcgtcaatttagtccctgaatatagactccgtttgtcactttagtccctgaatttgaccaacagaatctacattcagagactg 22093068  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||||||||||||||||||| ||||| |||| || ||| ||||||||| |||||||||| ||||||||    
T  22093069 ttttgcaatttctctacattcagggactaaagtaactaatcattttccattcaggaactaaagtgattaattccc 22093143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 179
Target Start/End: Complemental strand, 24007030 - 24006876
Alignment:
Q  25 tcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacatt 124  Q
    ||||| |||| ||||||||||||||| |||| |||  ||| || ||||||||||  |||||||||| |||||||||| |||||| |||||||||| ||||    
T  24007030 tcaatgtagtacctgaatgtagactctgttaatcattttagtctctgaaattgagtaacagagtctacattcagggactgttttgcaatttctctgcatt 24006931  T
Q  125 cagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||||||| |||||||||| |  ||||||||||||  || ||||||||| ||||||    
T  24006930 cagggactaaagtgactaattttttcccattcagaaaccaaagtgactgattccc 24006876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 39598667 - 39598585
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattca 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| |||| ||||| ||||||    
T  39598667 actccgttagtcaatttagtccctgaatgtagactccgttagtcactttagtccctaaaattgactaacaaagtctacattca 39598585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 8219247 - 8219335
Alignment:
Q  4 tctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcaggga 101  Q
    ||||||| || |||||||||||||||||| ||||||||||| ||||||||||||||         ||||||||| |||||||||||||||||||||||    
T  8219247 tctgaatgcagactccgttagtcaatttaatccctgaatgtggactccgttagtca---------ctgaaattggccaacagagtctgcattcaggga 8219335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 31820039 - 31820191
Alignment:
Q  21 ttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctcta 120  Q
    ||||||||||||||| ||||||||| ||||||||| |||| ||| ||||| |||||||| |||||| ||| |||||| | | ||||||  | |||||||     
T  31820039 ttagtcaatttagtctctgaatgtatactccgttaatcactttagtccctaaaattgactaacagaatctacattcatgaactgttttgtattttctctg 31820138  T
Q  121 cattcagggacgaaagtgactactcctttcccattcagggactaaagtgacta 173  Q
     ||||||  || ||| |||||| || |||  |||||| | |||||||||||||    
T  31820139 tattcagaaactaaaatgactattcatttttcattcatgaactaaagtgacta 31820191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 17914097 - 17914202
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctct 119  Q
    |||||||||||||| |||| |||||||| |  ||||||||| |||||| || |||||||| || ||||||| ||||||   | |||||| ||||||||||    
T  17914097 gttagtcaatttagaccctaaatgtagattttgttagtcactttaatcactaaaattgactaatagagtctacattcaaaaactgttttgcaatttctct 17914196  T
Q  120 acattc 125  Q
    ||||||    
T  17914197 acattc 17914202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 153
Target Start/End: Complemental strand, 31499521 - 31499373
Alignment:
Q  4 tctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaat 103  Q
    ||||||| || |||||||||||||||||||||| ||||||||||||   || ||||| ||  ||||||||||||||||||| | ||| |||| |  || |    
T  31499521 tctgaatgcagactccgttagtcaatttagtccttgaatgtagactttatttgtcactttggtccctgaaattgaccaacaaaatctacatt-aaagact 31499423  T
Q  104 gttttacaatttctctacattcagggacgaaagtgactactcctttccca 153  Q
    ||||| ||||||||||  ||| | | |  |||||||||||| ||||||||    
T  31499422 gttttgcaatttctctgtatttaagaattaaagtgactacttctttccca 31499373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 39598683 - 39598786
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    ||||||||||||| ||||| |||||||||| | |||| |||||| ||| ||||||| ||| ||| |||  | | |||||| ||| |||||||||||||||    
T  39598683 aaattgaccaacaaagtctacattcagggactattttgcaatttatctgcattcagtgactaaaatgaaaatttctttcctattgagggactaaagtgac 39598782  T
Q  172 taat 175  Q
    ||||    
T  39598783 taat 39598786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 32092903 - 32092973
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgacta 142  Q
    |||||||| |||||||||| |||||||||| | |||| |||||| ||| ||||||||||| ||||||||||    
T  32092903 aaattgactaacagagtctacattcagggactatttttcaatttatctgcattcagggactaaagtgacta 32092973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 22092959 - 22092879
Alignment:
Q  76 tgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattc 156  Q
    |||| |||||||||| |||||||||| | ||||||||||| ||| || ||| |||| |||||||| |||||||||| ||||    
T  22092959 tgactaacagagtctacattcagggactattttacaatttatctgcaatcaaggactaaagtgacgactcctttcctattc 22092879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 31820017 - 31819915
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||| ||| |||||||||| ||||||| || | |||| |||||| ||| |||| |||||| ||| |||| | |||||||| |||| ||||||||||||||    
T  31820017 aaatggactaacagagtctacattcagtgactattttccaatttatctgcatttagggactaaaatgacgattcctttcctattc-gggactaaagtgac 31819919  T
Q  172 taat 175  Q
    ||||    
T  31819918 taat 31819915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 8219226 - 8219284
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||| |||||||||||||||  ||||||| |||||||||||||||  ||||||||||||    
T  8219226 actctgttagtcaatttagtttctgaatgcagactccgttagtcaatttaatccctgaa 8219284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 39598690 - 39598641
Alignment:
Q  24 gtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||||||||||| ||||||||| |||||||||||||  ||| ||||||||    
T  39598690 gtcaatttagtcgctgaatgtatactccgttagtcaatttagtccctgaa 39598641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 176
Target Start/End: Original strand, 24007056 - 24007160
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||||||| ||||||  |  | ||||||||||| |||  ||||| |||| ||||| || |||| ||||| | ||| |||| ||||||||    
T  24007056 aaattgactaacagagtctacattcaaagtctattttacaatttatctgtattcaaggactaaagtaacgactcatttcctagtcaaggaccaaagtgac 24007155  T
Q  172 taatt 176  Q
    |||||    
T  24007156 taatt 24007160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 26705149 - 26705311
Alignment:
Q  17 tccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttc 116  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||| |||||||||||||||||||  |||| |||||||||| |||||| |||||||    
T  26705149 tccgttagtcaatttagtccctgaatgtagaacccgttagtcactttagtccctgaaattgaccaacaacgtctacattcagggactgttttgcaatttc 26705248  T
Q  117 tctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  26705249 tctacattcagggactaaagtgactactctttttccattcaggaactaaagtgactaattccc 26705311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 13536669 - 13536844
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccc-tgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaat 103  Q
    |||||| || ||||||||||||||||||| ||| ||||||||||||| ||||||||| ||| |||||||||| |||||| ||||||| |||||||||| |    
T  13536669 ctgaatgcagactccgttagtcaatttagccccctgaatgtagactctgttagtcactttagtccctgaaatggaccaatagagtctacattcagggact 13536768  T
Q  104 gttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||||| ||||||||||  |||||| ||| |||||||||||||||||| |||||| |||||||||||||||||||||    
T  13536769 gttttgcaatttctctgtattcagagactaaagtgactactcctttctcattcaaggactaaagtgactaattccc 13536844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 21222638 - 21222461
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcaggga 101  Q
    ||||||||| || ||| |||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||| | |||| |||    
T  21222638 tctctgaatgcagacttcgttagtcaatttagtccctgaatgtagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagga 21222539  T
Q  102 atgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
     |||||| |||||||||| |||||| ||||  |||||||||||| |||| |||||||| |||||||| ||||||||||    
T  21222538 ctgttttgcaatttctctgcattcaaggacttaagtgactactcttttctcattcaggaactaaagttactaattccc 21222461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 19295435 - 19295272
Alignment:
Q  21 ttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctcta 120  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| |||| || ||  ||| ||||| |||||| |||||||||      
T  19295435 ttagtcaatttagtccctgaatgtagactccgttggtcactttagtccctgaaattgactaacatagcctatatttagggactgttttgcaatttctcag 19295336  T
Q  121 cattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattcccgtata 184  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  19295335 cattcagggactaaagtgactactcctttcctattcaaggactaaagtgactaattcccctata 19295272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 25089262 - 25089435
Alignment:
Q  6 tgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgt 105  Q
    ||||| || ||||| ||||||||||||||||||||||||||||| | |||||||| ||| ||| ||||||||||||||| |||||  ||||||| | |||    
T  25089262 tgaatgcagactccattagtcaatttagtccctgaatgtagacttcattagtcactttagtccatgaaattgaccaacatagtctatattcaggaactgt 25089361  T
Q  106 tttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||| |||||||||| ||||||| ||| |||||||||| || ||  |||||||||||||||||||||||||||||    
T  25089362 tttgcaatttctctgcattcagtgactaaagtgactattcattgtccattcagggactaaagtgactaattccc 25089435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 10588010 - 10587883
Alignment:
Q  52 gttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcc 151  Q
    ||||||||| ||| ||||||||||||| ||||| ||||| |||||||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||     
T  10588010 gttagtcactttagtccctgaaattgaacaacatagtctacattcagggactgttttgcaatttctctgcattcagggactaaagtgactactcctttct 10587911  T
Q  152 cattcagggactaaagtgactaattccc 179  Q
    |||||| |||||||||||||||||||||    
T  10587910 cattcatggactaaagtgactaattccc 10587883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 10672791 - 10672615
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcaggga 101  Q
    ||||||||| || | | ||||||||||||||||||||||||||||||| ||||||||||  || | ||||||||| ||||||| ||||| ||||||||||    
T  10672791 tctctgaatgcatatttcgttagtcaatttagtccctgaatgtagacttcgttagtcactatagttcctgaaatttaccaacatagtctacattcaggga 10672692  T
Q  102 atgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
     ||||||| ||||| | | |||||   ||| ||||||||||||| |||| |||||||||| |||| | ||||||||||    
T  10672691 ctgttttataatttttatgcattcgaagactaaagtgactactcatttctcattcagggattaaa-taactaattccc 10672615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 10862132 - 10862258
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||||| ||| ||||||||||||||||| | ||||| |||||||  | |||||| |||||    
T  10862132 actccgttagtcaatttagtccctgaatatagactctgttcgtcactttagtccctgaaattgaccaata-agtctacattcagctactgttttgcaatt 10862230  T
Q  115 tctctacattcagggacgaaagtgacta 142  Q
    ||||| ||||||||||| ||||| ||||    
T  10862231 tctctgcattcagggactaaagtaacta 10862258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 13536663 - 13536560
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||||||| |||||||||| | |||| |||||| ||| |||||||| |  ||||||||  ||||||||| |||||||||||||||||||    
T  13536663 aaattgactaacagagtctacattcagggactattttgcaatttatctgcattcaggcattaaagtgacggctcctttcctattcagggactaaagtgac 13536564  T
Q  172 taat 175  Q
    ||||    
T  13536563 taat 13536560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 19295457 - 19295560
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| ||||||||||||||||||||| | ||||  ||||| ||| ||||||||||| ||||| || |||||||| | |||||| ||||||||||||    
T  19295457 aaattgactaacagagtctgcattcagggactattttgtaatttatctgcattcagggactaaagtaacgactccttttctattcagagactaaagtgac 19295556  T
Q  172 taat 175  Q
    ||||    
T  19295557 taat 19295560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 25089255 - 25089152
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||||||| |||||||||| | |||| |||||| ||| ||||||| ||| |||||| | |||||| ||| ||||| |||||||||||||    
T  25089255 aaattgactaacagagtctacattcagggactattttgcaatttatctgcattcagagactaaagtggcgactcctctcctattcatggactaaagtgac 25089156  T
Q  172 taat 175  Q
    ||||    
T  25089155 taat 25089152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 10588047 - 10588150
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| || | ||||| |||||| ||| | |||| |||||| ||| |||||| ||||  ||||||| |||||||||| |||||||||||||||||||    
T  10588047 aaattgactaataaagtctacattcatggactattttgcaatttatctgcattcatggacttaagtgacaactcctttcctattcagggactaaagtgac 10588146  T
Q  172 taat 175  Q
    ||||    
T  10588147 taat 10588150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 13536647 - 13536691
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||| |||||||||||||||||||||||| |||||||||||||||    
T  13536647 actctgttagtcaatttagtccctgaatgcagactccgttagtca 13536691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 10862115 - 10862013
Alignment:
Q  73 aattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgact 172  Q
    ||||||| |||||||||| |||||||||| |   || |||||  | | ||||||||||| |||||||| ||||||||  ||||||| ||||||| |||||    
T  10862115 aattgactaacagagtctacattcagggactacattgcaattaatttgcattcagggactaaagtgacgactccttttacattcagagactaaaatgact 10862016  T
Q  173 aat 175  Q
    |||    
T  10862015 aat 10862013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 176
Target Start/End: Original strand, 21222690 - 21222747
Alignment:
Q  119 tacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaatt 176  Q
    ||||||||||||| |||||||| | | |||||| |||||||||| |||||||||||||    
T  21222690 tacattcagggactaaagtgacgatttctttcctattcagggaccaaagtgactaatt 21222747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 19295483 - 19295415
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||||| || |||| |||||||||||||||||||||||| ||||| | |||||||  ||| ||||||||    
T  19295483 ctgaatgcagactctgttagtcaatttagtccctgaatgcagacttcattagtcaatttagtccctgaa 19295415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 10588057 - 10588019
Alignment:
Q  21 ttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  10588057 ttagtcaatttagtccttgaatgcagactccgttagtca 10588019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 26705119 - 26705173
Alignment:
Q  19 cgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    ||||| |||||||||||||||||| |||| |||||||||||  ||| ||||||||    
T  26705119 cgttaatcaatttagtccctgaatatagaatccgttagtcaatttagtccctgaa 26705173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 28752336 - 28752242
Alignment:
Q  81 aacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    |||||||||| |||||| ||| | |||| |||||| ||| |||||||| || ||||||||  || |||||   |||| |||||||||||||||||    
T  28752336 aacagagtctacattcatggactattttgcaatttatctgcattcaggtactaaagtgacatcttctttcttgttcaaggactaaagtgactaat 28752242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 12651274 - 12651230
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    ||||||||||||||||| |||||||||||  ||||| ||||||||    
T  12651274 actccgttagtcaatttggtccctgaatgccgactctgttagtca 12651230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 48)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 10757740 - 10757566
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||| ||||||||||| ||||| ||| || ||| ||    
T  10757740 ctgaatgcagactccgttagtcaatttagtccctgaatgtagactctgttaatcactataatccctgagattgaccaacatagtctacatccatggactg 10757641  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  10757640 ttttgcaatttatctacattcagggactaaagtgactactcatttctcattcagggactaaagtgactaattccc 10757566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 10970911 - 10970737
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||||||||||||||||||||||||||||||||||| |||| ||||  |||||||||| ||||||||||| ||||| ||| || ||| ||    
T  10970911 ctgaatgcagactccgttagtcaatttagtccctgaatgtagactctgttaatcactataatccctgagattgaccaacatagtctacatccatggactg 10970812  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||| ||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  10970811 ttttgcaatttatctacattcagggactaaagtgactactcatttctcattcagggactaaagtgactaattccc 10970737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 22018037 - 22017873
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctct 119  Q
    ||||||| |||||||| ||||||||| ||||||||| |||| ||| ||| ||||||||||||||||| | | |||||||||| |||||| ||||||||||    
T  22018037 gttagtctatttagtctctgaatgtatactccgttaatcactttagtccttgaaattgaccaacagaatatacattcagggactgttttgcaatttctct 22017938  T
Q  120 acattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattcccgtata 184  Q
     ||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||| ||||    
T  22017937 gcattcagggactaaagtgactactcctttcccattcagggattaaagtgactgattcccctata 22017873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 176
Target Start/End: Complemental strand, 18830744 - 18830574
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| ||| |||||||||| ||    
T  18830744 ctgaatgcagacttcgttagtcaatttagtccctgaatgtagactccattagtcactttagtccctgaaattgaccaacagaatctacattcagggactg 18830645  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaatt 176  Q
    |||  |||||| ||| ||| || |||| ||||||||||||| |||| |||||||||||||||||||||||||    
T  18830644 tttagcaatttatctgcatcca-ggactaaagtgactactcatttctcattcagggactaaagtgactaatt 18830574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 2063252 - 2063429
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcaggga 101  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||| |  ||||||||| ||| ||  | ||||||||||||||||||| ||||||||||    
T  2063252 tctctgaatgcaaactccgttagtcaatttagtccctaaatgtagaatttgttagtcactttagtctttaaaattgaccaacagagtctacattcaggga 2063351  T
Q  102 atgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
     || ||| |||||||||| || ||| |||  ||||||||||||| ||||||||||| |||||||||||||||||||||    
T  2063352 ctgctttgcaatttctctgcaatcaaggattaaagtgactactcatttcccattcaaggactaaagtgactaattccc 2063429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 37695057 - 37694896
Alignment:
Q  18 ccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttct 117  Q
    ||||||||||||||||||||||||| |||||||  |||||||| ||| || || ||||||||||||| | ||| |||||||||| |||||| ||||||||    
T  37695057 ccgttagtcaatttagtccctgaatatagactctattagtcactttagtcacttaaattgaccaacacaatctacattcagggactgttttgcaatttct 37694958  T
Q  118 ctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    || ||||||||||| |||||||||||||| ||| || |||| ||||||||||||||||||||    
T  37694957 ctgcattcagggactaaagtgactactccattctcactcagtgactaaagtgactaattccc 37694896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 5448315 - 5448479
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||||||| ||||||||||||||||||| |||||| | |||||||| ||| | ||||||||||||||||||||| | |||||||||| |||||| |||||    
T  5448315 actccgttggtcaatttagtccctgaatatagacttcattagtcactttagttcctgaaattgaccaacagagtttacattcagggactgttttgcaatt 5448414  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||||| ||||||||||| |||||||||| || ||| | ||||| ||| |||||||||||||||||    
T  5448415 tctctgcattcagggactaaagtgactattctttttcgattcacggagtaaagtgactaattccc 5448479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 5324852 - 5324679
Alignment:
Q  6 tgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgt 105  Q
    ||||| || |||| ||||||||||||||||| |||||||| |||| ||| ||||| ||| ||||||||||||||||||||||||| ||||||  || |||    
T  5324852 tgaatgcagactctgttagtcaatttagtccttgaatgtaaactctgttcgtcactttagtccctgaaattgaccaacagagtctacattcaaagactgt 5324753  T
Q  106 tttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||| |||||||||| ||| ||| | | |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  5324752 tttgcaatttctctgcatccagaggctaaagcgactactcctttcacattcagggactaaagtgactaactccc 5324679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 30470988 - 30470814
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||||||||| |||||||||||  ||||||||||||| ||||||||| ||| ||||||||||||||||||| |  || |||| ||||| ||    
T  30470988 ctgaatgcagactccgttaatcaatttagtcattgaatgtagactctgttagtcactttagtccctgaaattgaccaacaaatgctacatttagggagtg 30470889  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||||||| |||||||| || ||||||||||||| |||||| |||||| ||||||| ||| |||||||    
T  30470888 ttttgcaatttctctgcattcaggaactaaagtgactactcatttcccgttcaggaactaaagagaccaattccc 30470814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 2634194 - 2634021
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||| ||| ||||||||||||||||||||||||||  |||| |||| ||| || |||||||||||||| | ||||| |||||||||| ||    
T  2634194 ctgaatgcagactctgttcgtcaatttagtccctgaatgtagactttgttaatcactttagtcgctgaaattgaccaataaagtctacattcagggactg 2634095  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattcc 178  Q
    |||| |||||||||  ||||| | | | ||||||||||||| |||| |||||| ||||||||||||||||||||    
T  2634094 ttttgcaatttctcagcattcggcggctaaagtgactactcttttctcattcatggactaaagtgactaattcc 2634021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 2232531 - 2232368
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||| ||||| ||||||||||||||||||||||||   ||| |||| ||| ||||||||||||||||||||| ||| |||| ||||| |||||| |||||    
T  2232531 actctgttagccaatttagtccctgaatgtagacttt-ttaatcactttagtccctgaaattgaccaacagaatctacattgagggattgttttgcaatt 2232433  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||||  |||||||||| ||| ||||||||| |||  |||| ||| |||||||||||||||||||    
T  2232432 tctctctattcagggactaaattgactactcatttttcatttaggaactaaagtgactaattccc 2232368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 18836448 - 18836278
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||| | |||||||||||||| ||   |||| ||||| ||    
T  18836448 ctgaatgcagactccgttagtca-tttagtccctgaatgtagactccattagtcactttagtccataaaattgaccaacagcgttaacatttagggactg 18836350  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattc 177  Q
    ||||  ||||| ||| ||||||||||| ||||||||||||| |||| ||||||||||| ||| ||||||||||    
T  18836349 ttttg-aatttatctgcattcagggactaaagtgactactcatttctcattcagggacaaaaatgactaattc 18836278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 9826740 - 9826911
Alignment:
Q  4 tctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaat 103  Q
    ||||||| || ||| ||||| |||||||| ||||||||| ||||||| ||||||||| ||||||| |||||||||| |||||||||| | |||| | | |    
T  9826740 tctgaatgcagacttcgttaatcaatttaatccctgaatttagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcact 9826839  T
Q  104 gttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    ||||| |||||||||| |||||| | ||  |||||||||||| ||||  ||||||| |||||||||||||||    
T  9826840 gttttgcaatttctctgcattcaagtacttaagtgactactcttttctgattcaggaactaaagtgactaat 9826911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 30378848 - 30379017
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcaggga 101  Q
    ||||||||| || |||| ||||||||||| ||||||||||| ||||||||||||||||| ||| |  ||||||||||||||   ||||||||||||| ||    
T  30378848 tctctgaatgcagactctgttagtcaattcagtccctgaat-tagactccgttagtcactttagtgtctgaaattgaccaa---agtctgcattcagaga 30378943  T
Q  102 atgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
     |  ||| |||||||||| |||| |||||| ||||||||||||| ||||| ||| || ||||||||||||||||    
T  30378944 cttctttgcaatttctctgcattaagggactaaagtgactactcatttcctatttagagactaaagtgactaat 30379017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 11821846 - 11822007
Alignment:
Q  19 cgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcag----ggaatgttttacaatt 114  Q
    |||||||||||||||||  ||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||  ||||||     || |||||| |||||    
T  11821846 cgttagtcaatttagtctatgaatgtagactctgttagtcactttagtccctgaaattgaccaacaaagtctaaattcagagattgattgttttgcaatt 11821945  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaatt 176  Q
    ||||| ||||||||||| ||||| | ||||| ||||||||| | |||||||||| |||||||    
T  11821946 tctctgcattcagggactaaagtaagtactcatttcccattgaaggactaaagtaactaatt 11822007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 47463933 - 47463813
Alignment:
Q  56 gtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccatt 155  Q
    ||||| ||| ||||||||||| | ||||||||||| ||||||  || |||||| |||||| ||| ||||||||||| ||||||||||||| ||||||||     
T  47463933 gtcactttagtccctgaaatttatcaacagagtctacattcaaagactgttttgcaatttatctgcattcagggactaaagtgactactcatttcccatc 47463834  T
Q  156 cagggactaaagtgactaatt 176  Q
    |||||||||||||||||||||    
T  47463833 cagggactaaagtgactaatt 47463813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 18500717 - 18500878
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||| ||||||||||||||||||||||| ||||||| |||| |||| ||| || |||||||||||||||||  ||| |||||| | | ||||||||||||    
T  18500717 actctgttagtcaatttagtccctgaatttagactctgttaatcactttagtctctgaaattgaccaacagtatctacattcaagaactgttttacaatt 18500816  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattc 177  Q
    ||||| ||  || | |  ||| ||||||||| |||  || |||||||| ||||||||||||||    
T  18500817 tctctgcacccaagaattaaaatgactactcatttttca-tcagggacaaaagtgactaattc 18500878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 10380765 - 10380633
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||| |||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||| ||| | |||     || ||    
T  10380765 ctgaatgcagacttcgttagtcaatttagtccctaaatgtagactcagttagtcactttagtccctgaaattgaccaacaaagtttacat-----gactg 10380671  T
Q  105 ttttacaatttctctacattcagggacgaaagtgacta 142  Q
    |||| |||||||||| |||||||  || ||||||||||    
T  10380670 ttttgcaatttctctgcattcagaaactaaagtgacta 10380633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 12140827 - 12140663
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    |||||||||||||||||||||| |||||||||| |  ||||||||  ||| ||||| |||||||  |||| |||||  ||| ||||| |||||| |||||    
T  12140827 actccgttagtcaatttagtccttgaatgtagaatttgttagtcattttagtccctaaaattgattaacaaagtctatatttagggactgttttgcaatt 12140728  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||| | |||||| |||  |||||||| |||  |||| |||| | ||| |||||||||||||||||    
T  12140727 tctttgcattcaaggattaaagtgacgacttatttctcatttaaggattaaagtgactaattccc 12140663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 168
Target Start/End: Complemental strand, 1387448 - 1387286
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||| ||| ||||| | |||||| |||| | | | |||||| ||| ||    
T  1387448 ctgaatgcaaaccccgttagtcaatttagttccggaatgtagacttcgttagtcactttagtccctaatattgactaaca-aatatacattcaaggactg 1387350  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagt 168  Q
     |||  ||||||||| |||||| |||| ||| ||||||||| |||| |||||| |||| |||||    
T  1387349 ctttgtaatttctctgcattcatggactaaaatgactactcttttctcattcatggaccaaagt 1387286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 20 - 137
Target Start/End: Complemental strand, 8951175 - 8951058
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctct 119  Q
    ||||||||||||||| ||| |||||||||| |||||||||  ||| |  || |||||||||||| |||||| ||||||  || |||||| |||||||| |    
T  8951175 gttagtcaatttagttccttaatgtagacttcgttagtcattttagtttcttaaattgaccaactgagtctacattcaaagactgttttgcaatttcttt 8951076  T
Q  120 acattcagggacgaaagt 137  Q
    |||||||||||| |||||    
T  8951075 acattcagggactaaagt 8951058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 30470994 - 30471097
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||  |||| ||||| |||||||||| | ||||||||||| |||||||||||| || |||||||| |||| ||| | |||||| ||||||||||||    
T  30470994 aaattgattaacatagtctacattcagggactattttacaatttatctacattcaggaactaaagtgacgactctttttctattcagagactaaagtgac 30471093  T
Q  172 taat 175  Q
    ||||    
T  30471094 taat 30471097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 5448299 - 5448196
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||||| | |||||||||  | ||||||||||| ||| ||||||||||| ||| |||  |||||||||| ||||||||| ||||| |||    
T  5448299 aaattgactaacagagtttacattcaggggctattttacaatttatctgcattcagggactaaaatgatgactcctttcctattcagggaataaagggac 5448200  T
Q  172 taat 175  Q
    ||||    
T  5448199 taat 5448196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 22018026 - 22018129
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||| ||| |||| ||||| |||||||||| | |||| |||||| ||| ||||||| ||||||| |||| |||| ||||| ||| |||||||||||||||    
T  22018026 aaatagactaacatagtctacattcagggactattttgcaatttatctgcattcagagacgaaaatgacgactcatttcctatttagggactaaagtgac 22018125  T
Q  172 taat 175  Q
    ||||    
T  22018126 taat 22018129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 55382732 - 55382835
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||| ||||| ||||||| || | |||| |||||| ||| ||||||||||  |||||||| |||| ||||| ||||| |||||||||||||    
T  55382732 aaattgactaacaaagtctacattcagagactattttgcaatttatctgcattcagggattaaagtgacgactcatttcctattcaaggactaaagtgac 55382831  T
Q  172 taat 175  Q
    ||||    
T  55382832 taat 55382835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 55382714 - 55382671
Alignment:
Q  17 tccgttagtcaatttagtccctgaatgtagactccgttagtcac 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  55382714 tccgttagtcaatttagtccctggatgtagactccgttagtcac 55382671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 177
Target Start/End: Complemental strand, 55382660 - 55382576
Alignment:
Q  93 attcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattc 177  Q
    ||||| ||| || ||| |||||||||| |||||| |||| ||||||||||||| ||| ||||||| | |||||| ||||||||||    
T  55382660 attcaaggactgctttgcaatttctctgcattcacggactaaagtgactactcattttccattcaagaactaaaatgactaattc 55382576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 1387539 - 1387622
Alignment:
Q  92 cattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    |||||||||||| ||||||||||| ||| ||||||||| | ||| |||  | | |||||| |||||||||||||||| ||||||    
T  1387539 cattcagggaatattttacaatttatctgcattcagggcctaaaatgatgatttctttcctattcagggactaaagtaactaat 1387622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 2634200 - 2634303
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||||||| ||||||| || | |||  |||||| ||||||||||| ||| |||||||  |||| ||||  ||| | |||||||||||||    
T  2634200 aaattgactaacagagtctacattcagagactatttagcaatttatctacattcagtgactaaagtgaagactcatttcttatttaaggactaaagtgac 2634299  T
Q  172 taat 175  Q
    ||||    
T  2634300 taat 2634303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 47943605 - 47943526
Alignment:
Q  18 ccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattca 97  Q
    ||||||||||||||| ||||||||||||||||  |||| ||||  || ||||| ||||||||||||| | ||| ||||||    
T  47943605 ccgttagtcaatttaatccctgaatgtagactatgttaatcactatagtccctaaaattgaccaacaaaatctacattca 47943526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 47943624 - 47943727
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||  ||||| |||||||||| | |||| |||||| ||| |||| | |||| |||||||| |||| ||||| ||||||||||||||  |||    
T  47943624 aaattgactaaccaagtctacattcagggactattttgcaatttatctgcatttaaggactaaagtgacgactcatttcctattcagggactaaaacgac 47943723  T
Q  172 taat 175  Q
    ||||    
T  47943724 taat 47943727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 3391181 - 3391255
Alignment:
Q  70 tgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactact 144  Q
    |||||||||| |||| ||||| ||||||  || |||||| |||||||||| ||||||| ||| ||||||||||||    
T  3391181 tgaaattgactaacaaagtctacattcaatgattgttttgcaatttctctgcattcagagactaaagtgactact 3391255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 1387512 - 1387444
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||||| || |||| |||||||||||||||| |||||||||||||  ||||||||| ||| | ||||||    
T  1387512 ctgaatgcagactctgttagtcaatttagtcgctgaatgtagactttgttagtcactttagttcctgaa 1387444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 3370052 - 3370096
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||| |||||||||||||||||||||||| ||||| |||||||||    
T  3370052 actctgttagtcaatttagtccctgaatgcagacttcgttagtca 3370096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Original strand, 5448281 - 5448341
Alignment:
Q  13 aaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||||| |||||||||||||||||||| ||| |||||||||| ||||  ||| ||||||||    
T  5448281 aaactctgttagtcaatttagtccctggatgcagactccgttggtcaatttagtccctgaa 5448341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 18836470 - 18836426
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||| ||||||| |||||||||||||||| |||||||||||||||    
T  18836470 actctgttagtccatttagtccctgaatgcagactccgttagtca 18836426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 29908967 - 29909039
Alignment:
Q  6 tgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattga 78  Q
    ||||| || |||||||||||||||||||||  |||||||||| ||| ||| |||| ||| | |||||||||||    
T  29908967 tgaatgcagactccgttagtcaatttagtcgttgaatgtagagtccattattcactttagttcctgaaattga 29909039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 47463916 - 47463968
Alignment:
Q  123 ttcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    ||||||||| |||||||| |||| ||||| ||||||| |||||||||||||||    
T  47463916 ttcagggactaaagtgacgactcatttcctattcaggaactaaagtgactaat 47463968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 2634229 - 2634158
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||||||||  | |||| |||||||||||||||||||||||| |||||| ||| ||||  ||| ||||||||    
T  2634229 tctctgaatgtagactctgttagtcaatttagtccctgaatgcagactctgttcgtcaatttagtccctgaa 2634158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 29908992 - 29908889
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| ||| ||||||||||||| | | | |||| |||||| ||| ||| ||| ||| |||||||| |||| ||||| ||||| |||  ||||||||    
T  29908992 aaattgactaacggagtctgcattcatgaactattttgcaatttatctgcatccagtgactaaagtgacgactcatttcctattcaaggatcaaagtgac 29908893  T
Q  172 taat 175  Q
    ||||    
T  29908892 taat 29908889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 37695108 - 37695207
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||||||| ||||||| || | |||| |||||| ||| |||||| |||| |||||||  |||| |||||  |||| | |||||||||||    
T  37695108 aaattgactaacagagtctacattcagagattattttgcaatttatctgcattcaaggactaaagtgatgactcatttccttttcatgaactaaagtgac 37695207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 10757750 - 10757704
Alignment:
Q  27 aatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    ||||||||||||||||| |||||||||||||||  ||| ||||||||    
T  10757750 aatttagtccctgaatgcagactccgttagtcaatttagtccctgaa 10757704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 10970921 - 10970875
Alignment:
Q  27 aatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    ||||||||||||||||| |||||||||||||||  ||| ||||||||    
T  10970921 aatttagtccctgaatgcagactccgttagtcaatttagtccctgaa 10970875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 30378844 - 30378778
Alignment:
Q  73 aattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtga 139  Q
    ||||||| |||||||||||||||||| || | |||| |||||| | ||||| ||||||| |||||||    
T  30378844 aattgactaacagagtctgcattcagagactattttgcaatttatttacatccagggactaaagtga 30378778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 18830761 - 18830708
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    ||||||| |||||||||||||||| ||||| |||||||||  ||| ||||||||    
T  18830761 gttagtccatttagtccctgaatgcagacttcgttagtcaatttagtccctgaa 18830708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 30378816 - 30378873
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    ||||||||| || |||| ||||||||||| |||| ||||||| |||||| ||||||||    
T  30378816 tctctgaatgcagactctgttagtcaattcagtctctgaatgcagactctgttagtca 30378873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 10380787 - 10380743
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||| ||||||||||||| |||||||||| ||||| |||||||||    
T  10380787 actctgttagtcaatttaatccctgaatgcagacttcgttagtca 10380743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 18500691 - 18500743
Alignment:
Q  21 ttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||| ||||||| ||||||||||||||||| ||||||||  ||| ||||||||    
T  18500691 ttagccaatttaatccctgaatgtagactctgttagtcaatttagtccctgaa 18500743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 5 - 179
Target Start/End: Original strand, 50335550 - 50335724
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||| || |||| ||| ||||| ||||||||||||||||||| |||||||||| ||    
T  50335550 ctgaatgcagactccgttcgtcaatttagtccctgaatgtagactccgctaatcactttagtccctaaaattgaccaacagagtctacattcagggactg 50335649  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||| ||| ||||||||||  ||||||||||||  ||| |||||| ||||||||||||||||||||||    
T  50335650 ttttgcaatttgtctgcattcagggattaaagtgactactttttttccattctgggactaaagtgactaattccc 50335724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 37608082 - 37608254
Alignment:
Q  6 tgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgt 105  Q
    ||||| || |||| ||||||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||||||||  | | |||||||||| |||    
T  37608082 tgaatgcagactctgttagtcaatttagtccttgaatgtagactccgttagtcactttggtccctgaaattgaccaacagttt-tacattcagggactgt 37608180  T
Q  106 tttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||| |||||||||| ||||||||||| ||| ||||||||||||||||||||| |||||||||||||||| ||||    
T  37608181 tttgcaatttctctgcattcagggactaaaatgactactcctttcccattcaaggactaaagtgactaactccc 37608254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 13735551 - 13735723
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattga-ccaacagagtctgcattcaggg 100  Q
    ||||||||| || |||||||||||||||||||||  | ||||||||||||||||||||| ||| ||||||||||||| | |||||||||| |||||||||    
T  13735551 tctctgaatgcagactccgttagtcaatttagtcaataaatgtagactccgttagtcactttagtccctgaaattgatcaaacagagtctacattcaggg 13735650  T
Q  101 aatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    | |||||| |||||||| | ||||||| ||| ||| ||||||||||||||||||| |  ||||||||||||||||    
T  13735651 actgttttgcaatttctttgcattcagagactaaa-tgactactcctttcccattta-tgactaaagtgactaat 13735723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 11633272 - 11633401
Alignment:
Q  38 tgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagt 137  Q
    |||||||||| |  ||||||||| ||| ||| ||||||||||||| |||||||||||| ||||| |||| ||||||||||||||||||||| || ||| |    
T  11633272 tgaatgtagattatgttagtcactttagtccttgaaattgaccaatagagtctgcatttagggactgttatacaatttctctacattcaggaactaaaat 11633371  T
Q  138 gactactcctttcccattcagggactaaag 167  Q
    |||||||| ||| |||||||||||| ||||    
T  11633372 gactactcattttccattcagggacaaaag 11633401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 176
Target Start/End: Complemental strand, 8097884 - 8097714
Alignment:
Q  6 tgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgt 105  Q
    ||||| || ||||| |||||||||||||| ||||||||||||||| ||||||||  ||| ||| | ||||||||||||| |||||  ||| || || |||    
T  8097884 tgaatacatactccattagtcaatttagttcctgaatgtagactctgttagtcattttagtccttaaaattgaccaacatagtctatatttagagactgt 8097785  T
Q  106 tttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaatt 176  Q
    ||| |||||||||| |||| ||  || |||||| |||||  |||| ||||||| |||||||||||||||||    
T  8097784 tttgcaatttctctgcatttagaaactaaagtggctactaatttctcattcagagactaaagtgactaatt 8097714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 179
Target Start/End: Original strand, 42847135 - 42847301
Alignment:
Q  4 tctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaat 103  Q
    ||||||| ||||||| ||||||||||||||||| | ||||||||||| ||||||||     ||   ||||| |||| |||| ||||| |||||| ||| |    
T  42847135 tctgaatgcaaactc-gttagtcaatttagtccataaatgtagactctgttagtca-----at---tgaaactgactaacaaagtctacattcaaggatt 42847225  T
Q  104 gttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||||| |||||||||| ||||||||||  ||||||||||||  ||||| || ||| ||||||||||||||||||||    
T  42847226 gttttgcaatttctctgcattcagggaataaagtgactacttttttcctatccagagactaaagtgactaattccc 42847301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 50335544 - 50335441
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||| ||||| |||||| ||| | |||| |||||| ||| ||||||||||| |||||||| |||| ||||| ||||||||| |||||||||    
T  50335544 aaattgactaacaaagtctacattcatggactattttgcaatttatctgcattcagggactaaagtgacgactcatttcctattcagggattaaagtgac 50335445  T
Q  172 taat 175  Q
    ||||    
T  50335444 taat 50335441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 32374090 - 32373982
Alignment:
Q  70 tgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtg 169  Q
    |||||||||| |||| ||||| |||||| | | |||||| ||| |||| | ||| ||||||| |||||||||||| |||||| |||||||||||||| ||    
T  32374090 tgaaattgactaacacagtctacattcaagaactgttttgcaaattctatgcatccagggactaaagtgactact-ctttcctattcagggactaaaatg 32373992  T
Q  170 actaattccc 179  Q
    ||||||||||    
T  32373991 actaattccc 32373982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 32374136 - 32374092
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagact 49  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||    
T  32374136 ctgaatgcaaactctgttagtcaatttagtccctgaatgtagact 32374092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 37608075 - 37607982
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaa 165  Q
    |||||||| |||||||||| |||||| ||| | |||| |||||| | | ||||||||||| ||| |||| | || ||||| |||||||||||||    
T  37608075 aaattgactaacagagtctacattcaaggactattttgcaatttatatgcattcagggactaaaatgacaattcatttcctattcagggactaa 37607982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 50335533 - 50335586
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||||||||||||||||||||||| |||||||||| ||||  ||| ||||||||    
T  50335533 gttagtcaatttagtccctgaatgcagactccgttcgtcaatttagtccctgaa 50335586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 13735532 - 13735576
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||| |||||||||||||||| ||||||| |||||||||||||||    
T  13735532 actctgttagtcaatttagtctctgaatgcagactccgttagtca 13735576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 13735464 - 13735422
Alignment:
Q  133 aaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    ||||||||| ||||||||| ||| |||||||||||||||||||    
T  13735464 aaagtgactgctcctttcctattaagggactaaagtgactaat 13735422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 37608059 - 37608103
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||| ||||||||||||||||| |||||| |||||| ||||||||    
T  37608059 actctgttagtcaatttagtccttgaatgcagactctgttagtca 37608103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 190348 - 190173
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||| ||||||||||||||||||| |||||| |||  |||| |||  ||||||||||||||||||||||||||||| ||||||| || ||    
T  190348 ctgaatacagactctgttagtcaatttagtccctaaatgtaaactatgttaatcaatttaatccctgaaattgaccaacagagtctacattcagagactg 190249  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattcccg 180  Q
    |||| |||||||||| ||||||| ||| ||| ||||||||| |||||||||||||||||||| |||||||||||||    
T  190248 ttttgcaatttctctgcattcagagactaaaatgactactcttttcccattcagggactaaaatgactaattcccg 190173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 10760177 - 10760004
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||| |||  ||| ||| ||||||||||||||| ||| | |||||||||| ||    
T  10760177 ctgaatgcagactccgttagtcaatttagtccctgaatgtagactccgttaatcat-ttagtccttgaaattgaccaacaaagtttacattcagggactg 10760079  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| ||||||||||||||||||| || |||||| |||||| ||| ||| |||||||| ||||||||||||||||    
T  10760078 tttttcaatttctctacattcaggaactaaagtggctactcattttccactcagggaccaaagtgactaattccc 10760004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 21211575 - 21211419
Alignment:
Q  17 tccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttc 116  Q
    ||||||||| ||||||||| ||||||||||| | |||||||||| ||| | ||||||||||||||||| ||||| ||||||| || |||||| ||||||     
T  21211575 tccgttagttaatttagtctctgaatgtagattgcgttagtcactttagttcctgaaattgaccaacaaagtctacattcagagactgttttgcaatttt 21211476  T
Q  117 tctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgacta 173  Q
    ||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  21211475 tctgcattcagggactaaagtgactactcatttcccattcagggactaaagtgacta 21211419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 17497119 - 17497277
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctct 119  Q
    |||||| |||||||||||||||||||||||||||  ||||| ||| ||||||||||||||||||| ||||| |||||||||| | |||| ||||||||||    
T  17497119 gttagttaatttagtccctgaatgtagactccgtcggtcactttagtccctgaaattgaccaacaaagtctacattcagggactattttgcaatttctct 17497218  T
Q  120 acattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattcc 178  Q
     ||||||||||| ||| ||||||||| |||| |||||| |||||||||||||| |||||    
T  17497219 gcattcagggactaaaatgactactcatttctcattcacggactaaagtgactcattcc 17497277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 2555549 - 2555722
Alignment:
Q  6 tgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgt 105  Q
    ||||| || ||| |||||||||| |||||||||||| ||||||| |||||||||| ||||||||||||||||||||||  ||||| |||||||||| |||    
T  2555549 tgaatgcagacttcgttagtcaaattagtccctgaacgtagacttcgttagtcactttaatccctgaaattgaccaacgcagtctacattcagggactgt 2555648  T
Q  106 tttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||| |||||| ||| |||| || ||| ||||| |||| |  ||||||||||||||||||| |||||||||||||    
T  2555649 tttgcaatttttctgcatttagagactaaagtaactaattatttcccattcagggactaacgtgactaattccc 2555722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 13753389 - 13753225
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    ||||||||||||||||||| ||||||| ||||||||| | |||||| ||| ||||||||||||||||||||||||| || ||||  | |||||| |||||    
T  13753389 actccgttagtcaatttagcccctgaaagtagactccatcagtcactttagtccctgaaattgaccaacagagtctacactcagatactgttttgcaatt 13753290  T
Q  115 tctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||||| ||||||  ||| ||||||||||||| ||| | ||| |||||||||||||||||||||||    
T  13753289 tctctgcattcaatgactaaagtgactactcattttctatttagggactaaagtgactaattccc 13753225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 19491780 - 19491951
Alignment:
Q  4 tctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaat 103  Q
    ||||||| || ||| ||||| |||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||| |||||||||| | |||| | | |    
T  19491780 tctgaatgcagacttcgttaatcaatttagtccctgaatttagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcact 19491879  T
Q  104 gttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    ||||| |||||||||| |||||| ||||  |||||||||||| |||| |||||||| |||||||||||||||    
T  19491880 gttttgcaatttctctgcattcaaggacttaagtgactactcttttctcattcaggaactaaagtgactaat 19491951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 21943898 - 21943741
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctct 119  Q
    ||||||||||||||||  |||||||||| |  |||| |||| ||| ||||| |||||||| |||| ||||| |||||| ||  |||||| ||||||||||    
T  21943898 gttagtcaatttagtctttgaatgtagattatgttaatcactttagtccctaaaattgactaacaaagtctacattcaaggtctgttttgcaatttctct 21943799  T
Q  120 acattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattc 177  Q
     |||||||| || ||||||||||||| ||||||||||| |||||||||||||||||||    
T  21943798 gcattcaggtactaaagtgactactcatttcccattcaaggactaaagtgactaattc 21943741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 30100781 - 30100610
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||||| ||||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||  ||   ||||| |||||| ||| ||    
T  30100781 ctgaatgcagactccattagtcaatatagtccctgaatgtagactctgtttgtcactttagtccctgaaattgaataa---agtctacattcaaggattg 30100685  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||||||| |||| |||||  ||||||||||||| |||| || | |||||||||||||||||||||||    
T  30100684 ttttgcaatttctctgcatttagggattaaagtgactactcttttctcacttagggactaaagtgactaattccc 30100610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 20430046 - 20429873
Alignment:
Q  6 tgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgt 105  Q
    ||||| || |||| |||||| ||||||||   |||||||| |||| ||| ||||| ||| ||| ||||||||||||||||||||| ||||||  || |||    
T  20430046 tgaatgcagactctgttagttaatttagtttttgaatgtaaactctgttcgtcactttagtccttgaaattgaccaacagagtctacattcaaagactgt 20429947  T
Q  106 tttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    ||| |||||||||| ||| ||| | | |||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  20429946 tttgcaatttctctgcatccagaggctaaagcgactactcctttcacattcagggactaaagtgactaactccc 20429873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 31912365 - 31912192
Alignment:
Q  6 tgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgt 105  Q
    ||||| || |||||||||||||||||||||  | | ||||||||| ||||||||| ||| ||| |||||||||| |||   |||| | || |  || |||    
T  31912365 tgaatacagactccgttagtcaatttagtcatttactgtagactctgttagtcactttagtccatgaaattgactaacgttgtctacgttaaatgactgt 31912266  T
Q  106 tttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||||||| ||||| ||||||||||  ||| |||||| || ||||||||||| |||||||||||||||||||||    
T  31912265 tttacaatgtctctgcattcagggattaaaatgactattcttttcccattcaaggactaaagtgactaattccc 31912192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 19564815 - 19564713
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatt 114  Q
    ||||||||||||||||||||| ||||||||||||||| ||| |||| ||| ||||||||||||| || |||||||| |||| ||  | |||||| |||||    
T  19564815 actccgttagtcaatttagtctctgaatgtagactccattaatcactttagtccctgaaattgatcaccagagtctacatttagaaactgttttgcaatt 19564716  T
Q  115 tct 117  Q
    |||    
T  19564715 tct 19564713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 30852688 - 30852790
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||| ||| ||||||||||||| ||||||||||| |||||||||||| ||| | | ||||||||||||||||||||| || ||||||| ||    
T  30852688 ctgaatgcagacttcgtaagtcaatttagtctctgaatgtagattccgttagtcactttagttcatgaaattgaccaacagagtctacaatcagggactg 30852787  T
Q  105 ttt 107  Q
    |||    
T  30852788 ttt 30852790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 34419603 - 34419685
Alignment:
Q  19 cgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcaggga 101  Q
    |||||||||||||||||| | ||||||||||| ||| ||||  ||| ||||||||||||||||||| ||||| ||||||||||    
T  34419603 cgttagtcaatttagtccttaaatgtagactctgttggtcattttagtccctgaaattgaccaacaaagtctacattcaggga 34419685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 11298065 - 11298160
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattca 97  Q
    ||||||||| || ||||| |||||||||||||| ||||||||||||||| |||| |||| ||||||  | |||||||| |||| ||||| ||||||    
T  11298065 tctctgaatgcagactccattagtcaatttagttcctgaatgtagactctgttaatcactttaatctttaaaattgactaacaaagtcttcattca 11298160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 176
Target Start/End: Original strand, 34419672 - 34419731
Alignment:
Q  117 tctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaatt 176  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||| ||||||||||||||    
T  34419672 tctacattcagggactaaagtgactactcctttctcattcaaggattaaagtgactaatt 34419731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 177
Target Start/End: Original strand, 43548948 - 43549053
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    ||||||||||||| ||||| |||||| | | |||||| |||||||||| || ||| |||| |||||||||| | | ||  ||||||| ||||||||||||    
T  43548948 aaattgaccaacatagtctacattcatgtactgttttgcaatttctctgcaatcaaggactaaagtgactatttccttttcattcagagactaaagtgac 43549047  T
Q  172 taattc 177  Q
    ||||||    
T  43549048 taattc 43549053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 13753405 - 13753508
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    ||||||||  ||||||||| |||| ||||| | |||| |||||| ||| ||||||| ||| ||| |||| ||| |||||| ||| |||||||||||||||    
T  13753405 aaattgacttacagagtctacatttagggactattttgcaatttatctgcattcagagactaaaatgacgacttctttcctatttagggactaaagtgac 13753504  T
Q  172 taat 175  Q
    ||||    
T  13753505 taat 13753508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 10760183 - 10760284
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    ||||||||  ||||||||| |||| ||||| | |||| |||||| ||| ||||||| ||| ||||||||  ||| ||||| ||||||||| |||||||||    
T  10760183 aaattgacttacagagtctacatttagggactattttgcaatttatctgcattcagagactaaagtgacggctcatttcctattcagggattaaagtgac 10760282  T
Q  172 ta 173  Q
    ||    
T  10760283 ta 10760284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 10760191 - 10760141
Alignment:
Q  23 agtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    ||||||||||||||||||||| |||||||||||||||  ||| ||||||||    
T  10760191 agtcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaa 10760141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 117
Target Start/End: Complemental strand, 32539437 - 32539326
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||| |||||||||||||||| | ||||||||||||  ||||||||| ||| | |||||||||||  || | | ||| ||||||| || ||    
T  32539437 ctgaatgcatacttcgttagtcaatttagttcttgaatgtagactatgttagtcactttagt-cctgaaattgattaatatactctacattcagagactg 32539339  T
Q  105 ttttacaatttct 117  Q
    |||| ||||||||    
T  32539338 ttttgcaatttct 32539326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 30852664 - 30852710
Alignment:
Q  13 aaactccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||||| |||||||||||||||||||||||| ||||| ||| |||||    
T  30852664 aaactctgttagtcaatttagtccctgaatgcagacttcgtaagtca 30852710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 30852639 - 30852586
Alignment:
Q  122 attcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    |||||||||| |||||||| |||  ||||| ||||| |||||||||||||||||    
T  30852639 attcagggactaaagtgacgacttatttcctattcaaggactaaagtgactaat 30852586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 11298046 - 11298090
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    |||| |||||||||||||||| ||||||| ||||||| |||||||    
T  11298046 actctgttagtcaatttagtctctgaatgcagactccattagtca 11298090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 59855 - 59711
Alignment:
Q  25 tcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctacatt 124  Q
    ||||||||||||||||||| |||||||||||||||  ||| |||||||||||||| |||||||||| |||||||||  |||||| |||||||||| ||||    
T  59855 tcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaaattgactaacagagtctacattcaggggctgttttgcaatttctctgcatt 59756  T
Q  125 cagggacgaaagtgactactcctttcccattcagggactaaagtg 169  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||||    
T  59755 cagggactaaagtgactacacctttcccattgagggactaaagtg 59711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 59843 - 59807
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaa 41  Q
    |||||| || |||||||||||||||||||||||||||    
T  59843 ctgaatgcagactccgttagtcaatttagtccctgaa 59807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1300 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 1456 - 1629
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcaggga 101  Q
    ||||||||| || ||| ||||||| ||||||||||||||||||||||||  |||||||| ||||||| |||||||||| |||||||||| | |||| |||    
T  1456 tctctgaatgcagacttcgttagttaatttagtccctgaatgtagactcaattagtcacattaatccttgaaattgactaacagagtctacgttcaagga 1555  T
Q  102 atgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
     |||||| |||||||||| |||||| ||||  |||||||||||| |||| |||||||| |||||||||||||||    
T  1556 ctgttttgcaatttctctgcattcaaggacttaagtgactactcttttctcattcaggaactaaagtgactaat 1629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: scaffold0407
Description:

Target: scaffold0407; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 1005 - 832
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||| |||||||||||||| ||||||||||||||||  ||||||||| ||| |||||||||||||| || ||||||| |||||| ||| ||    
T  1005 ctgaatgcagacttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtccctgaaattgactaatagagtctacattca-ggactg 907  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||||||| ||||||||||| ||||||||| ||| ||| ||||||||  ||||||||||| |||||||    
T  906 ttttgcaatttctctgcattcagggactaaagtgacttctctttttccattcagaaactaaagtgaccaattccc 832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 7469 - 7296
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || ||| |||||||||||||| ||||||||||||||||  ||||||||| ||| |||||||||||||| || ||||||| |||||| ||| ||    
T  7469 ctgaatgcagacttcgttagtcaatttaatccctgaatgtagactttgttagtcactttagtccctgaaattgactaatagagtctacattca-ggactg 7371  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
    |||| |||||||||| ||||||||||| ||||||||| ||| ||| ||||||||  ||||||||||| |||||||    
T  7370 ttttgcaatttctctgcattcagggactaaagtgacttctctttttccattcagaaactaaagtgaccaattccc 7296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 1023 - 969
Alignment:
Q  19 cgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    ||||||||||||||||||||||||| ||||| |||||||||  ||||||||||||    
T  1023 cgttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaa 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0407; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 7487 - 7433
Alignment:
Q  19 cgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    ||||||||||||||||||||||||| ||||| |||||||||  ||||||||||||    
T  7487 cgttagtcaatttagtccctgaatgcagacttcgttagtcaatttaatccctgaa 7433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 27659 - 27486
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || || ||||||||||||||| | |||||||||||||| |||| ||||| ||| ||| ||||||||||||||||||||| |||| || || ||    
T  27659 ctgaatacataccccgttagtcaatttacttcctgaatgtagacttcgttcgtcactttagtccttgaaattgaccaacagagtctacattaagagactg 27560  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattcc 178  Q
    |||| |||||||||   |||||||| | ||||| ||||||| ||| | ||||||||||||||||||||||||||    
T  27559 ttttgcaatttctccgtattcaggggctaaagtaactactcattttctattcagggactaaagtgactaattcc 27486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 57557 - 57728
Alignment:
Q  4 tctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaat 103  Q
    ||||||| || ||| ||||| |||||||||||||||||| ||||||| ||||||||| ||||||| |||||||||| |||||||||| | |||| | | |    
T  57557 tctgaatgcagacttcgttaatcaatttagtccctgaatttagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcact 57656  T
Q  104 gttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    ||||| |||||||||| |||| | | ||  |||||||||||| ||||  ||||||| |||||||||||||||    
T  57657 gttttgcaatttctctgcattaaagtacttaagtgactactcttttctgattcaggaactaaagtgactaat 57728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 24001 - 24172
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatg 104  Q
    |||||| || |||| ||| ||||||||||||| ||||||||||||   || ||||| ||  ||| ||||||||||||||||| ||| |||||||||| ||    
T  24001 ctgaatgcagactctgttggtcaatttagtccttgaatgtagactttattcgtcacttttgtccatgaaattgaccaacagaatctacattcagggattg 24100  T
Q  105 ttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattc 177  Q
    |||| |||||||||| ||||||||||| |||   |||||| |||| ||||||||||| |||||||||||||||    
T  24101 ttttgcaatttctctgcattcagggactaaaacaactact-cttttccattcagggattaaagtgactaattc 24172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 101
Target Start/End: Complemental strand, 24027 - 23998
Alignment:
Q  72 aaattgaccaacagagtctgcattcaggga 101  Q
    ||||||||||||||||||||||||||||||    
T  24027 aaattgaccaacagagtctgcattcaggga 23998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0102; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 23983 - 24023
Alignment:
Q  19 cgttagtcaatttagtccctgaatgtagactccgttagtca 59  Q
    ||||||||||||||||||||||||| |||||| ||| ||||    
T  23983 cgttagtcaatttagtccctgaatgcagactctgttggtca 24023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 127912 - 128083
Alignment:
Q  4 tctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaat 103  Q
    ||||||| || ||| ||||| |||||||| |||| |||| ||||||| ||||||||| ||||||| |||||||||| |||||||||| | |||| | | |    
T  127912 tctgaatgcagacttcgttaatcaatttaatcccagaatttagactcagttagtcacattaatccttgaaattgactaacagagtctacgttcaagcact 128011  T
Q  104 gttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaat 175  Q
    ||||| |||||||||| |||||| | ||  |||||||||||| ||||  ||||||| |||||||||||||||    
T  128012 gttttgcaatttctctgcattcaagtacttaagtgactactcttttctgattcaggaactaaagtgactaat 128083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 92 - 177
Target Start/End: Original strand, 72107 - 72192
Alignment:
Q  92 cattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattc 177  Q
    |||||||||| |||||| ||||||||  |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  72107 cattcagggactgttttgcaatttctgcacattcagggactaaagtgactacttctttcccattcagggactaaagtgactaattc 72192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 72008 - 72117
Alignment:
Q  22 tagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctctac 121  Q
    |||||||||||||||||||||| | |||  ||||||||  ||| |||||||||||||||| || | ||| |||||||||| |||||| ||||||||  ||    
T  72008 tagtcaatttagtccctgaatgcaaactttgttagtcaatttagtccctgaaattgaccatcaaaatctacattcagggactgttttgcaatttctgcac 72107  T
Q  122 attcagggac 131  Q
    ||||||||||    
T  72108 attcagggac 72117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 314187 - 314277
Alignment:
Q  5 ctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcatt 95  Q
    |||||| || ||||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||| ||||||||||||| ||||    
T  314187 ctgaatgcagactccgttagtcaatttagtccctgaatgtagagtctgttagtcactttagtccctgaaattaaccaacagagtctacatt 314277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 314165 - 314223
Alignment:
Q  15 actccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaa 73  Q
    |||| |||||||||||||||||||||||| |||||||||||||||  ||| ||||||||    
T  314165 actctgttagtcaatttagtccctgaatgcagactccgttagtcaatttagtccctgaa 314223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 11697 - 11854
Alignment:
Q  20 gttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcagggaatgttttacaatttctct 119  Q
    ||||| ||||||| || ||||||||| | || ||||||||| ||| ||||| |||||||| || |||||||  ||| | ||| | |||| ||||||||||    
T  11697 gttaggcaatttaatctctgaatgtatattctgttagtcactttagtccctaaaattgactaagagagtct--atttaaggactattttgcaatttctct 11794  T
Q  120 acattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaattccc 179  Q
     ||||||||||| |||| |||||||| ||||||||||||  |||||||||| ||||||||    
T  11795 gcattcagggactaaagcgactactcatttcccattcagaaactaaagtgattaattccc 11854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 11708 - 11606
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||| | |||| ||||| |||||||||| | ||||||||||| ||| |||| ||| || ||| | || |||| ||||| |||||| ||||||||||||    
T  11708 aaattgcctaacatagtctacattcagggactattttacaatttatctgcatttagg-actaaaataacgactcatttcctattcagtgactaaagtgac 11610  T
Q  172 taat 175  Q
    ||||    
T  11609 taat 11606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 15468 - 15365
Alignment:
Q  72 aaattgaccaacagagtctgcattcagggaatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgac 171  Q
    |||||||| |||||||||| ||||||| || | ||||||||||| ||| |||||| |||| |||||||| |||| ||||  |||||  ||||||||||||    
T  15468 aaattgactaacagagtctacattcagagactattttacaatttatctgcattcaaggactaaagtgacaactcatttctaattcaaagactaaagtgac 15369  T
Q  172 taat 175  Q
    ||||    
T  15368 taat 15365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 15470 - 15638
Alignment:
Q  1 atctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttagtcaccttaatccctgaaattgaccaacagagtctgcattcaggg 100  Q
    ||||||||||  | |||||||||| |||||||||| ||||||||||| || || ||||   ||| | |||||||||||| |||| |||    ||||| ||    
T  15470 atctctgaatgtagactccgttagccaatttagtctctgaatgtagattctgtcagtcgttttagtacctgaaattgactaacaaagt----attca-gg 15564  T
Q  101 aatgttttacaatttctctacattcagggacgaaagtgactactcctttcccattcagggactaaagtgactaa 174  Q
    | |||||| |||||||||| ||||||| ||| ||| ||||| ||  | ||||||||| |||||||||| |||||    
T  15565 actgttttgcaatttctctgcattcagagactaaattgacttctattctcccattcatggactaaagtcactaa 15638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 15439 - 15493
Alignment:
Q  2 tctctgaattcaaactccgttagtcaatttagtccctgaatgtagactccgttag 56  Q
    |||||||||  | |||| ||||||||||||| || ||||||||||||||||||||    
T  15439 tctctgaatgtagactctgttagtcaatttaatctctgaatgtagactccgttag 15493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University