View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11811_high_4 (Length: 647)

Name: NF11811_high_4
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11811_high_4
NF11811_high_4
[»] chr3 (1 HSPs)
chr3 (2-630)||(42415094-42415722)


Alignment Details
Target: chr3 (Bit Score: 613; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 2 - 630
Target Start/End: Original strand, 42415094 - 42415722
Alignment:
Q  2 caaaccaaattgtgtatacacaggaacactagtcagaacatccagaggatcaaagacttatttcccctacaactgatcaaagtgtatccagtagtttttg 101  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42415094 caaaccaaattatgtatacacaggaacacaagtcagaacatccagaggatcaaagacttatctcccctacaactgatcaaagtgtatccagtagtttttg 42415193  T
Q  102 taataatggaaatgccagcaattttaacagcattggttatggaagtaattgtggaagtagtggcaatgttgaacaagttgccactttcagaacagcagca 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42415194 taataatggaaatgccagcaattttaacagcattggttatggaagtaattgtggaagtagtggcaatgttgaacaagttgccactttcagaacagcagca 42415293  T
Q  202 gtttcagagggaaagaatgaagaactcacaaacagtggatattcacatcgagctatgctacgagaagcagctctaaacaagttccgtttgaaacgaaaag 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42415294 gtttcagagggaaagaatgaagaactcacaaacagtggatattcacatcgagctatgctacgagaagcagctctaaacaagttccgtttgaaacgaaaag 42415393  T
Q  302 agagatgttatgagaagaaggtatatcaatatcaacatcaatatgagcttgtaattatacaagtatgatcaatgatcatcattgttttcatattatgcta 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42415394 agagatgttatgagaagaaggtatatcaatatcaacatcaatatgagcttgtaattatacaagtaagatcaatgatcatcattgttttcatattatgcta 42415493  T
Q  402 acttatttatactttttaacaggttcgatatgagagcagaaagaaactagcagagcagcgtcctcgagttaaaggacaatttgttcgccaaccgaatcct 501  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42415494 acttatttatactttttaacaggttcgatatgagagcagaaagaaactagcagagcagcgtcctcgagttaaaggacaatttgttcgccaaccgaatcct 42415593  T
Q  502 gattctctttctggagaaaaagattgctaagaatactgattattacattagcagatatgtgacttagtggagaggatagtgtgctttgttagcattagtt 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42415594 gattctctttctggagaaaaagattgctaagaatactgattattacattagcagatatgtgacttagtggagaggatagtgtgctttgttagcattagtt 42415693  T
Q  602 gcttcaaaattttgtttccttgacttctt 630  Q
    |||||||||||||||||||||||||||||    
T  42415694 gcttcaaaattttgtttccttgacttctt 42415722  T

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