View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_high_5 (Length: 531)
Name: NF11811_high_5
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 198 - 513
Target Start/End: Complemental strand, 28035073 - 28034754
Alignment:
| Q |
198 |
acagtgttgcatgagtgtagtttgtatagattaagcataacatactgaatcaacaaatgttttacttgttacattccaacgttttctccaaaggaatttt |
297 |
Q |
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| T |
28035073 |
acagtgttgcatgagtgtagtttgtatagattaagcataacatactgaatcaacaaatgttttacttgttacattccaacgttttctacaaaggaatttt |
28034974 |
T |
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| Q |
298 |
accctgtctatttgtattggaatgtttacttgtatgcctagagtgaaacagtacaagtctttgccggtgttacaaaaaa---ttaacttac-----atgt |
389 |
Q |
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| T |
28034973 |
a--ctgtctttttgtattagaatgttcacttgtatgcctggagtgaaacagtacatgtctttgctggtgttacaaaaaaattataacttacatgttatgt |
28034876 |
T |
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| Q |
390 |
tagaatcaaattaattaaatcgtagaataaaaacacagaagtaaacgtagtgataaaatattgtggggcattttttgttaatgtgggagttatatcaggc |
489 |
Q |
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| T |
28034875 |
tagaatc-aattaattaaatcatagaataaaaacataaaagtaaacgtagtgttaaaatattgtggggcattttttgttaatgtgggaattatatca-gc |
28034778 |
T |
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| Q |
490 |
accaaacccatcttcccatgttag |
513 |
Q |
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| T |
28034777 |
accaagtccatcttcccatgttag |
28034754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 7 - 136
Target Start/End: Complemental strand, 28035264 - 28035135
Alignment:
| Q |
7 |
gcacagagcaaacacatataatggcagnnnnnnnnnttcaagcaattttaccagaagccaaaagtaggttggaactttatcaatcaagaggtaccagagg |
106 |
Q |
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| T |
28035264 |
gcacaaagcaaacacatataatggcagaaaaaaaaattgaagcaattttaccagaagccaaaagtaggttggaactttatcaatcaagaggtaccagagg |
28035165 |
T |
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| Q |
107 |
attccattgatttaatatatactggggggg |
136 |
Q |
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| T |
28035164 |
attccattgatttaatatatactggggggg |
28035135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 8758023 - 8758077
Alignment:
| Q |
59 |
agaagccaaaagtaggttggaactttatcaatcaagaggtaccagaggattccat |
113 |
Q |
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| T |
8758023 |
agaagccaagagtaggttggagctttatcagtctagaggttcaagaggattccat |
8758077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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