View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_low_17 (Length: 337)
Name: NF11811_low_17
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 25 - 316
Target Start/End: Complemental strand, 26641883 - 26641592
Alignment:
| Q |
25 |
tgaacaagggaagctgctgactgagttgaaaatagacatgaagcaaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaa |
124 |
Q |
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| T |
26641883 |
tgaacaagggaagctgctgactgagttgaaaatagacatgaagcaaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaa |
26641784 |
T |
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| Q |
125 |
aatgttgtcaagaacgtgacaacagcggatgacgatgctgaatatgttgttgttgattagaattaattttgccttcaaaattgatattaacttgacactg |
224 |
Q |
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| T |
26641783 |
aatgttgtcaagaacgtgacaacagcagatgacgatgctgaatatgttgttgttgattagaattaattttaccttcaaaattgatattaacttgacactg |
26641684 |
T |
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| Q |
225 |
cgacttttagcttttgacttcaaacttgatttcttttcactcaaatctattattcaactcggttttataaattctcgaactttttgttctgt |
316 |
Q |
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| T |
26641683 |
cgacttttagcttttgacttcaaacttgatttcttttcactcaaatctattattcaactcggttttataaattctcgaactttttgttctgt |
26641592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 25 - 219
Target Start/End: Complemental strand, 26656664 - 26656470
Alignment:
| Q |
25 |
tgaacaagggaagctgctgactgagttgaaaatagacatgaagcaaatcaaagaattgctgttggaattcatgaagaaaacaccttcctcggaaggtgaa |
124 |
Q |
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|||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||| || | || | |||| |
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| T |
26656664 |
tgaacaagggaagctgctgaatgagttgaaaatagatgtgggacaaatcaaagaattgctgttggaattcaagaagaaaacacctcccacagacgatgaa |
26656565 |
T |
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| Q |
125 |
aatgttgtcaagaacgtgacaacagcggatgacgatgctgaatatgttgttgttgattagaattaattttgccttcaaaattgatattaacttga |
219 |
Q |
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| T |
26656564 |
aattttgtcaggaacgtgacaacaggggatgacggtcctgaatttgttgttgtcaattcgaattgattttgcatttaaaattgattttaagttga |
26656470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 64
Target Start/End: Complemental strand, 26662598 - 26662560
Alignment:
| Q |
26 |
gaacaagggaagctgctgactgagttgaaaatagacatg |
64 |
Q |
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||||||||||||||||||||||| |||||||| |||||| |
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| T |
26662598 |
gaacaagggaagctgctgactgaattgaaaatggacatg |
26662560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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