View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11811_low_18 (Length: 337)

Name: NF11811_low_18
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11811_low_18
NF11811_low_18
[»] chr4 (10 HSPs)
chr4 (1-112)||(44641777-44641881)
chr4 (3-102)||(44667259-44667358)
chr4 (3-102)||(44686585-44686683)
chr4 (9-55)||(47147548-47147593)
chr4 (2-55)||(48154907-48154961)
chr4 (9-55)||(40932984-40933031)
chr4 (9-55)||(41192236-41192283)
chr4 (10-55)||(47372827-47372873)
chr4 (12-92)||(29209198-29209279)
chr4 (13-92)||(25755495-25755575)
[»] chr6 (7 HSPs)
chr6 (15-89)||(5096015-5096090)
chr6 (30-91)||(413280-413341)
chr6 (3-54)||(1748006-1748058)
chr6 (9-75)||(3210548-3210615)
chr6 (12-49)||(18238210-18238248)
chr6 (9-44)||(1747712-1747748)
chr6 (40-92)||(30679603-30679655)
[»] chr8 (8 HSPs)
chr8 (13-89)||(23492213-23492290)
chr8 (9-53)||(16917358-16917403)
chr8 (9-52)||(10079970-10080014)
chr8 (14-89)||(32931141-32931216)
chr8 (6-55)||(21425218-21425268)
chr8 (9-89)||(490510-490591)
chr8 (12-55)||(30748641-30748685)
chr8 (9-80)||(43904700-43904772)
[»] chr3 (11 HSPs)
chr3 (3-55)||(55244447-55244500)
chr3 (3-55)||(46367447-46367500)
chr3 (9-92)||(36304141-36304225)
chr3 (9-55)||(11284163-11284210)
chr3 (12-89)||(40991609-40991687)
chr3 (10-55)||(41971330-41971376)
chr3 (6-55)||(42026596-42026646)
chr3 (3-52)||(43308731-43308781)
chr3 (9-74)||(45289132-45289198)
chr3 (9-46)||(6988076-6988113)
chr3 (12-55)||(49841794-49841838)
[»] chr2 (9 HSPs)
chr2 (6-89)||(26784366-26784450)
chr2 (9-89)||(19336919-19337000)
chr2 (9-65)||(32402675-32402732)
chr2 (12-55)||(8197601-8197645)
chr2 (12-55)||(8202361-8202405)
chr2 (11-89)||(18959088-18959167)
chr2 (9-53)||(1626370-1626415)
chr2 (9-89)||(37470159-37470240)
chr2 (9-80)||(26670943-26671015)
[»] chr7 (9 HSPs)
chr7 (9-75)||(45601651-45601718)
chr7 (6-57)||(41578181-41578233)
chr7 (9-55)||(19262518-19262565)
chr7 (15-89)||(1011228-1011302)
chr7 (9-54)||(1569191-1569237)
chr7 (9-54)||(40830377-40830422)
chr7 (9-89)||(42969873-42969954)
chr7 (12-55)||(36101837-36101881)
chr7 (12-55)||(40008491-40008535)
[»] chr1 (12 HSPs)
chr1 (9-55)||(13827640-13827687)
chr1 (6-55)||(109053-109103)
chr1 (6-55)||(15577590-15577640)
chr1 (8-89)||(34444530-34444612)
chr1 (9-89)||(19908061-19908142)
chr1 (9-55)||(40920589-40920636)
chr1 (9-89)||(6025780-6025861)
chr1 (9-89)||(6084150-6084231)
chr1 (3-55)||(27520267-27520320)
chr1 (9-89)||(41560404-41560485)
chr1 (9-89)||(37462902-37462982)
chr1 (4-55)||(50636251-50636303)
[»] chr5 (9 HSPs)
chr5 (9-89)||(14667946-14668027)
chr5 (12-55)||(41808100-41808144)
chr5 (9-75)||(31875015-31875081)
chr5 (9-85)||(12576890-12576967)
chr5 (7-55)||(18350962-18351011)
chr5 (3-55)||(35615452-35615505)
chr5 (9-88)||(418061-418141)
chr5 (14-57)||(6788247-6788291)
chr5 (6-89)||(9235219-9235302)
[»] scaffold0180 (1 HSPs)
scaffold0180 (9-88)||(25470-25550)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 44641881 - 44641777
Alignment:
Q  1 ggaaaatatagagattaatgagttggataaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccacttaatgatgagata 100  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44641881 ggaaaatatagagattaatgagttggataa-------tatatgatagaacattatagtttaattttatctatgtatccgatcccacttaataatgagata 44641789  T
Q  101 atatttggttgt 112  Q
    ||||||||||||    
T  44641788 atatttggttgt 44641777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 44667358 - 44667259
Alignment:
Q  3 aaaatatagagattaatgagttggataaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccacttaatgatgagataat 102  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||||||||| | || |  ||||||||||||||||||||||||||| |||| |||||||    
T  44667358 aaaatctagagattaacgagttgggtaaaatatgatatatgatagaacattttggtgtcgttttatctatgtatccgatcccacttagtgataagataat 44667259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 102
Target Start/End: Complemental strand, 44686683 - 44686585
Alignment:
Q  3 aaaatatagagattaatgagttggataaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccacttaatgatgagataat 102  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||||||||||| || |  ||||||||||||| ||||||||||||| |||| |||||||    
T  44686683 aaaatctagagattaacgagttgggtaaaatatgatatatgatagaacattatggtgtcgttttatctatgta-ccgatcccacttagtgataagataat 44686585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 47147548 - 47147593
Alignment:
Q  9 tagagattaatgagttggataaaatatgatatatgatagaacattat 55  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||    
T  47147548 tagagattaatgagttggataga-tatgatatatgatagaacattat 47147593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 48154961 - 48154907
Alignment:
Q  2 gaaaatatagagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    |||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||    
T  48154961 gaaaatctagagattaatgagttggatagaaacatgatatatgacagaacattat 48154907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 40933031 - 40932984
Alignment:
Q  9 tagagattaatgagttggataaa-atatgatatatgatagaacattat 55  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||    
T  40933031 tagagattaatgagttggatagggatatgatatatgatagaacattat 40932984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 41192236 - 41192283
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||||    
T  41192236 tagagattaatgagttggatagaaatatggtatatggtagaacattat 41192283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 47372827 - 47372873
Alignment:
Q  10 agagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    |||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  47372827 agagattaatgagttggatagaaatatggtatattatagaacattat 47372873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 29209279 - 29209198
Alignment:
Q  12 agattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccacttaatg 92  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||| |  |  ||| ||| ||||| |||| |||||||||||    
T  29209279 agattaatgagttggatagaaatatggtatatgatagagcattatggcgttgtttgatcaatgtagccgaccccacttaatg 29209198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 25755495 - 25755575
Alignment:
Q  13 gattaatgagttggataaa-atatgatatatgatagaacattatagtttaattttatctatgtatccgatcccacttaatg 92  Q
    |||||||||||||||||   ||||||||||| ||||||||||||||| | |||| ||| ||| |  |||||||| ||||||    
T  25755495 gattaatgagttggatagggatatgatatatcatagaacattatagtgtcatttgatccatgaagtcgatcccatttaatg 25755575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 5096015 - 5096090
Alignment:
Q  15 ttaatgagttggat-aaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    |||||||||||||| |||||||| | |||||||||||||||| |  |||||| ||||||||| |||||||||||||    
T  5096015 ttaatgagttggatcaaaatatggtttatgatagaacattatggcgtaatttgatctatgtagccgatcccactta 5096090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Original strand, 413280 - 413341
Alignment:
Q  30 aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccacttaat 91  Q
    ||||||| |||||||||||| |||||||| | |||| ||| ||||| |||||||||||||||    
T  413280 aaatatggtatatgatagaagattatagtgtcatttgatcaatgtagccgatcccacttaat 413341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 1748058 - 1748006
Alignment:
Q  3 aaaatatagagattaatgagttggata-aaatatgatatatgatagaacatta 54  Q
    ||||| ||||||||||||||||||||| ||||||  |||||||||||||||||    
T  1748058 aaaatttagagattaatgagttggatagaaatatagtatatgatagaacatta 1748006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 3210615 - 3210548
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgta 75  Q
    ||||||||||||||||||||  ||||||||  |||||||||||||||| || |||||| ||| |||||    
T  3210615 tagagattaatgagttggatggaaatatgagttatgatagaacattatggtgtaatttgatccatgta 3210548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 18238248 - 18238210
Alignment:
Q  12 agattaatgagttggataaaa-tatgatatatgatagaa 49  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  18238248 agattaatgagttggataaaaatatgatatatgatagaa 18238210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 1747748 - 1747712
Alignment:
Q  9 tagagattaatgagttggataaa-atatgatatatga 44  Q
    ||||||||||||||||||||||| |||||||||||||    
T  1747748 tagagattaatgagttggataaagatatgatatatga 1747712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 92
Target Start/End: Original strand, 30679603 - 30679655
Alignment:
Q  40 tatgatagaacattatagtttaattttatctatgtatccgatcccacttaatg 92  Q
    |||||||||||||||||   | |||| ||||||||| ||||||||||||||||    
T  30679603 tatgatagaacattataacgtcatttgatctatgtagccgatcccacttaatg 30679655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 23492213 - 23492290
Alignment:
Q  13 gattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||||||||||||||| |||||||||||||||||||||| ||| || | |||| ||| ||||| |||| ||||||||    
T  23492213 gattaatgagttggatagaaatatgatatatgatagaacactatggtgtcatttaatccatgtagccgaccccactta 23492290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 16917358 - 16917403
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacatt 53  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||    
T  16917358 tagagattaatgagttggatagaaatatggtatatgatagaacatt 16917403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 10080014 - 10079970
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacat 52  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||    
T  10080014 tagagattaatgagttggatagaaatatgatatttgatagaacat 10079970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 32931141 - 32931216
Alignment:
Q  14 attaatgagttggataaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||||||||||||  ||||||| | |||||||||||||||| |  |||||| ||| ||||| |||| ||||||||    
T  32931141 attaatgagttggacgaaatatggtgtatgatagaacattatggcataatttgatccatgtagccgaccccactta 32931216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 21425218 - 21425268
Alignment:
Q  6 atatagagattaatgagttggat-aaaatatgatatatgatagaacattat 55  Q
    |||||||||||||||||||||||  ||||||||| ||||||||| ||||||    
T  21425218 atatagagattaatgagttggatcgaaatatgatttatgatagaccattat 21425268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 490510 - 490591
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    |||||||| |||||||||||  ||||||| | |||||||||||||||| |  |||||| ||| ||||| |||| ||||||||    
T  490510 tagagattgatgagttggatccaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccactta 490591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 30748641 - 30748685
Alignment:
Q  12 agattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    |||||||||||||||||| ||||||||||||| || |||||||||    
T  30748641 agattaatgagttggatagaaatatgatatataattgaacattat 30748685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Complemental strand, 43904772 - 43904700
Alignment:
Q  9 tagagattaatgagttggat-aaaatatgatatatgatagaacattatagtttaattttatctatgtatccga 80  Q
    ||||||||||||||||||||  ||||||| | |||||||||||||||| |  |||||| ||| ||||| ||||    
T  43904772 tagagattaatgagttggatctaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccga 43904700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 55244447 - 55244500
Alignment:
Q  3 aaaatatagagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    ||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  55244447 aaaatctagagattaatgagttggatagaaatatggtatatgatagaacattat 55244500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 46367500 - 46367447
Alignment:
Q  3 aaaatatagagattaatgagttggataaa-atatgatatatgatagaacattat 55  Q
    ||||| ||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  46367500 aaaatctagagatgaatgagttggataaggatatgatatatgatagaacattat 46367447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 36304141 - 36304225
Alignment:
Q  9 tagagattaatgagttggat-aaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccacttaatg 92  Q
    |||||||||||||||||||| |||||||| | |||||||| ||||||| |  |||||| ||| ||||| |||| |||||| ||||    
T  36304141 tagagattaatgagttggatcaaaatatggtttatgataggacattatggcgtaatttgatccatgtagccgaccccactcaatg 36304225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 11284163 - 11284210
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    ||||||||||||||||||||| ||||||| |||||||| |||||||||    
T  11284163 tagagattaatgagttggatataaatatggtatatgattgaacattat 11284210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 40991609 - 40991687
Alignment:
Q  12 agattaatgagttggat-aaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||||||||||||||  |||||||| | |||||||||||||||| || |||||| ||| ||||| | || ||||||||    
T  40991609 agattaatgagttggaccaaaatatggtttatgatagaacattatggtgtaatttgatccatgtagctgaccccactta 40991687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 41971376 - 41971330
Alignment:
Q  10 agagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    |||||||||||||||| | | ||||||||||||||||||||||||||    
T  41971376 agagattaatgagttgtacagaaatatgatatatgatagaacattat 41971330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 42026646 - 42026596
Alignment:
Q  6 atatagagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    |||||| |||||||||||| |||| ||||||| ||||||||||||||||||    
T  42026646 atatagggattaatgagttagatagaaatatggtatatgatagaacattat 42026596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 43308731 - 43308781
Alignment:
Q  3 aaaatatagagattaatgagttggataaa-atatgatatatgatagaacat 52  Q
    ||||| ||||||||||| ||||||||| | |||||||||||||||||||||    
T  43308731 aaaatctagagattaatcagttggatagagatatgatatatgatagaacat 43308781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 45289198 - 45289132
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgt 74  Q
    ||||||||||||||||||||  ||||||| | ||||||||||||||||||  |||||| ||| ||||    
T  45289198 tagagattaatgagttggatccaaatatggtttatgatagaacattatagcataatttgatccatgt 45289132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 6988076 - 6988113
Alignment:
Q  9 tagagattaatgagttggataaaatatgatatatgata 46  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  6988076 tagagattaatgagttggatagaatatggtatatgata 6988113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 49841794 - 49841838
Alignment:
Q  12 agattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||    
T  49841794 agattaatgagttggatcgaaatatggtatatgatagaacattat 49841838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 89
Target Start/End: Complemental strand, 26784450 - 26784366
Alignment:
Q  6 atatagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    |||||||||||||||||||| ||| ||||||| ||||||||| |||||| | ||||||||| ||| ||||| || ||| ||||||    
T  26784450 atatagagattaatgagttgaatagaaatatggtatatgataaaacattttggtttaatttgatccatgtagccaatctcactta 26784366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 19337000 - 19336919
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||||||||||||||||||  ||||||| | |||||||||||||||| |  |||||| ||| ||||| || ||||||||||    
T  19337000 tagagattaatgagttggatcgaaatatggtttatgatagaacattatggcgtaatttgatccatgtagccaatcccactta 19336919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 32402675 - 32402732
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattt 65  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||| |||| ||||    
T  32402675 tagagattaatgagttggatagaaataaggtatatgatagaacattatggtttcattt 32402732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 8197645 - 8197601
Alignment:
Q  12 agattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    |||||||||||||||||| |||||||||||||||||||| |||||    
T  8197645 agattaatgagttggatagaaatatgatatatgatagaatattat 8197601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 8202405 - 8202361
Alignment:
Q  12 agattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    |||||||||||||||||| |||||||||||||||||||| |||||    
T  8202405 agattaatgagttggatagaaatatgatatatgatagaatattat 8202361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 18959088 - 18959167
Alignment:
Q  11 gagattaatgagttggat-aaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    |||||||||||||||||| |||||||| | |||||||||||||||| |  |||||| ||| ||||| | || ||||||||    
T  18959088 gagattaatgagttggatcaaaatatggtctatgatagaacattatggcataatttgatccatgtagctgaccccactta 18959167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 1626370 - 1626415
Alignment:
Q  9 tagagattaatgagttggataaaa-tatgatatatgatagaacatt 53  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||    
T  1626370 tagagattaatgagttgtataaaaatatgatatataatagaacatt 1626415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 37470240 - 37470159
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||||||||||||||||||  |||||||  ||||||||||||||||| || || ||| ||| ||||| |  ||||||||||    
T  37470240 tagagattaatgagttggatcgaaatatggcatatgatagaacattatggtgtagtttgatccatgtagctaatcccactta 37470159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 26670943 - 26671015
Alignment:
Q  9 tagagattaatgagttgga-taaaatatgatatatgatagaacattatagtttaattttatctatgtatccga 80  Q
    |||||||||||||||||||  |||||||||| |||||||||| || || || |||||| ||| ||||| ||||    
T  26670943 tagagattaatgagttggaccaaaatatgatttatgatagaatataatggtgtaatttgatccatgtagccga 26671015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Original strand, 45601651 - 45601718
Alignment:
Q  9 tagagattaatgagttggat-aaaatatgatatatgatagaacattatagtttaattttatctatgta 75  Q
    |||||||||||||||||||| |||||||||| |||||||||||| ||| || |||||| ||| |||||    
T  45601651 tagagattaatgagttggatcaaaatatgatttatgatagaacactatggtgtaatttgatccatgta 45601718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 41578233 - 41578181
Alignment:
Q  6 atatagagattaatgagttggataaa-atatgatatatgatagaacattatag 57  Q
    |||||||||||| ||||||||||| | ||||||||||||||||||| ||||||    
T  41578233 atatagagattagtgagttggatagagatatgatatatgatagaactttatag 41578181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 19262565 - 19262518
Alignment:
Q  9 tagagattaatgagttggataaa-atatgatatatgatagaacattat 55  Q
    |||||||||||||||||||||   ||||||||||||||||||||||||    
T  19262565 tagagattaatgagttggatagggatatgatatatgatagaacattat 19262518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 1011228 - 1011302
Alignment:
Q  15 ttaatgagttggataaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||||| ||||||  |||||| | || ||||||||||||| || |||||| ||||||||| |||| ||||||||    
T  1011228 ttaatgatttggatccaatatggtttaggatagaacattatggtgtaatttgatctatgtagccgaccccactta 1011302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 1569191 - 1569237
Alignment:
Q  9 tagagattaatgagttggat-aaaatatgatatatgatagaacatta 54  Q
    |||||||||||||||||||| |||||||| | |||||||||||||||    
T  1569191 tagagattaatgagttggatcaaaatatggtttatgatagaacatta 1569237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 40830377 - 40830422
Alignment:
Q  9 tagagattaatgagttggataaaatatgatatatgatagaacatta 54  Q
    |||| |||||||||||| |||  |||||||||||||||||||||||    
T  40830377 tagaaattaatgagttgtatatgatatgatatatgatagaacatta 40830422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 42969873 - 42969954
Alignment:
Q  9 tagagattaatgagttggat-aaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||| ||||||||||||||  ||||||| | |||||| ||||||||| || |||||| ||| ||||| |||| ||||||||    
T  42969873 tagaggttaatgagttggatccaaatatggtttatgattgaacattatcgtataatttgatccatgtagccgaccccactta 42969954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 36101881 - 36101837
Alignment:
Q  12 agattaatgagttggat-aaaatatgatatatgatagaacattat 55  Q
    ||||||||||||||||| |||||||| | ||||||||||||||||    
T  36101881 agattaatgagttggatcaaaatatggtttatgatagaacattat 36101837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Complemental strand, 40008535 - 40008491
Alignment:
Q  12 agattaatgagttggataaa-atatgatatatgatagaacattat 55  Q
    |||||||||||||||||| | | ||||||||||||||||||||||    
T  40008535 agattaatgagttggatagagacatgatatatgatagaacattat 40008491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 13827687 - 13827640
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  13827687 tagagattaatgagttggatagaaatatggtatatgatagaacattat 13827640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 109103 - 109053
Alignment:
Q  6 atatagagattaatgagttggataaa-atatgatatatgatagaacattat 55  Q
    ||||||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  109103 atatagacattaatgagttggataaatatatgatgtatgatagaacattat 109053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 15577590 - 15577640
Alignment:
Q  6 atatagagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    |||||||||||||||||||||||| | ||||||||| ||||||||||||||    
T  15577590 atatagagattaatgagttggatagagatatgatatttgatagaacattat 15577640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 34444530 - 34444612
Alignment:
Q  8 atagagattaatgagttggat-aaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    |||||||||||||||||||||  ||||||| | ||| ||| |||||||| || |||||| ||||||||| |||| ||||||||    
T  34444530 atagagattaatgagttggatccaaatatggtttataataaaacattatggtgtaatttgatctatgtagccgaccccactta 34444612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 19908142 - 19908061
Alignment:
Q  9 tagagattaatgagttgga-taaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||||||||||||||||| | ||||||| | |||||| ||||||||| |  |||||||||| ||||| |||| ||||||||    
T  19908142 tagagattaatgagttggattcaaatatggtttatgattgaacattattgcgtaattttatccatgtagccgaccccactta 19908061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 40920636 - 40920589
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    ||||||||||||||||||||| ||||||| |||||||||||| |||||    
T  40920636 tagagattaatgagttggatagaaatatggtatatgatagaatattat 40920589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 6025780 - 6025861
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||||||||||||||||||| ||||||| ||| ||||||||||| || |  | |||| ||| ||||| ||||| |||||||    
T  6025780 tagagattaatgagttggatagaaatatggtatctgatagaacatgatggcgtcatttgatccatgtagccgattccactta 6025861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 6084150 - 6084231
Alignment:
Q  9 tagagattaatgagttggat-aaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    |||||||||||||||||||| |||||||| | |||||||||||| ||| |  |||||| ||| ||||||  |||| ||||||    
T  6084150 tagagattaatgagttggatcaaaatatggtttatgatagaacaatatggcgtaatttgatccatgtatttgatctcactta 6084231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 27520320 - 27520267
Alignment:
Q  3 aaaatatagagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    ||||| |||||||||||||| |||||  ||||||||| ||||||||||||||||    
T  27520320 aaaatttagagattaatgagctggatccaaatatgatttatgatagaacattat 27520267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 41560404 - 41560485
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||||||||||||||||||  |||||||   |||||||||||||||| |  |||||| ||| ||||| |||| ||||||||    
T  41560404 tagagattaatgagttggatccaaatatgggttatgatagaacattatggcgtaatttgatccatgtagccgaccccactta 41560485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 37462982 - 37462902
Alignment:
Q  9 tagagattaatgagttggataaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||| |||||||||| ||| ||||||| | ||| |||||||||||| |  |||||| ||| ||||| |||| ||||||||    
T  37462982 tagaggttaatgagtttgatcaaatatggtttatcatagaacattatggcgtaatttgatccatgtagccgaccccactta 37462902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 50636251 - 50636303
Alignment:
Q  4 aaatatagagattaatgagttggat-aaaatatgatatatgatagaacattat 55  Q
    |||| ||||||||| |||||||||| |||||||| ||||||||||| ||||||    
T  50636251 aaatctagagattattgagttggataaaaatatggtatatgatagagcattat 50636303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 14667946 - 14668027
Alignment:
Q  9 tagagattaatgagttggataaaa-tatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||||||||||||||||||  || |||| | |||||||||||||||| || |||||| ||| ||||| |||| ||||||||    
T  14667946 tagagattaatgagttggatccaagtatggtttatgatagaacattatggtgtaatttgatccatgtaaccgaccccactta 14668027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 41808100 - 41808144
Alignment:
Q  12 agattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||    
T  41808100 agattaatgagttggatataaatatgatgtatgatagaacattat 41808144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 31875081 - 31875015
Alignment:
Q  9 tagagattaatgagttggataaaatatgatatatgatagaacattatagtttaattttatctatgta 75  Q
    |||||||||| ||||| ||||||| || || |||||||||||||||||| || |||| ||| |||||    
T  31875081 tagagattaaagagttagataaaacataatttatgatagaacattatagattcatttgatcaatgta 31875015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 12576967 - 12576890
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatccca 85  Q
    ||||||||||||||||| ||| ||||||| ||||||||||| |||||| || | |||||||  ||||| |||| ||||    
T  12576967 tagagattaatgagttgaatagaaatatggtatatgatagaccattatggtgtcattttatacatgtagccgacccca 12576890  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 18351011 - 18350962
Alignment:
Q  7 tatagagattaatgagttggata-aaatatgatatatgatagaacattat 55  Q
    ||||||||||||||||||||||| ||||||| ||| || |||||||||||    
T  18351011 tatagagattaatgagttggatagaaatatggtatttgttagaacattat 18350962  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 35615452 - 35615505
Alignment:
Q  3 aaaatatagagattaatgagttggat-aaaatatgatatatgatagaacattat 55  Q
    ||||| |||||||||||||||||||| |||||||  | ||||||||||||||||    
T  35615452 aaaatttagagattaatgagttggataaaaatatagtttatgatagaacattat 35615505  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 418141 - 418061
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactt 88  Q
    ||||||||||||||||||||  |||| || | |||||||||||||||| |  |||||| ||| ||||| |||| |||||||    
T  418141 tagagattaatgagttggatccaaatgtggtttatgatagaacattatggcgtaatttgatccatgtagccgaccccactt 418061  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 6788247 - 6788291
Alignment:
Q  14 attaatgagttgga-taaaatatgatatatgatagaacattatag 57  Q
    |||||||||||||| | ||||||||| ||||||||||||||||||    
T  6788247 attaatgagttggactgaaatatgatttatgatagaacattatag 6788291  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 89
Target Start/End: Original strand, 9235219 - 9235302
Alignment:
Q  6 atatagagattaatgagttggat-aaaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactta 89  Q
    ||||||||||||||||| |||||  ||||||| | |||||||||||||||| |  |||||| ||| ||||| |||| ||||||||    
T  9235219 atatagagattaatgagctggatcgaaatatggtttatgatagaacattatggcataatttgatccatgtagccga-cccactta 9235302  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 25550 - 25470
Alignment:
Q  9 tagagattaatgagttggata-aaatatgatatatgatagaacattatagtttaattttatctatgtatccgatcccactt 88  Q
    ||||||||||||||||||||| ||||| | ||||||||| |||||||| | ||  ||| |||||||||  | |||||||||    
T  25550 tagagattaatgagttggatagaaataagttatatgataaaacattatggcttcgtttgatctatgtagtcaatcccactt 25470  T

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