View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_low_19 (Length: 335)
Name: NF11811_low_19
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_low_19 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 335
Target Start/End: Original strand, 48656734 - 48657061
Alignment:
| Q |
7 |
aaaagtagttggaagccaacggtctttctttgtttgtcctctctgcaaatctaatgttggaaggtgcggcgccaataaaaattgagacatttgcattttg |
106 |
Q |
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| T |
48656734 |
aaaagtagttggaagccaacggtctttctttgtttgtcctctctgcaaatctaatgttggaaggtgcggtgccaataaaaattgagacatttgcattttg |
48656833 |
T |
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| Q |
107 |
cattgaaaatggaaatggtaatgtatacaaccacnnnnnnnntctaatcttggaaggtgtagctagtgagtgatgagtgagtgaaagtgatcgttccttc |
206 |
Q |
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| T |
48656834 |
cattgaaaatggaaatggtaatgtatacaaccacaaaaaaa-tctaatgttggaaggtgtagctagtgagtgatgagtgagtgagagtgatcgttccttc |
48656932 |
T |
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| Q |
207 |
attttatgtattctaacaaacagtcaactggtattataaataacattcatatttatctactatactatacttacgtactaaacaaactgtaaacagcatg |
306 |
Q |
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| T |
48656933 |
attttatgtattctaacaaacagtcaactggtattataaataacattcatatttatctactatactatacttacgtactaaacaaactgtaaacagcatg |
48657032 |
T |
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| Q |
307 |
gctgaggaggaactggataaacctttgct |
335 |
Q |
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| T |
48657033 |
gctgaggaggaactggataaacctttgct |
48657061 |
T |
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