View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_low_20 (Length: 310)
Name: NF11811_low_20
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_low_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 47 - 310
Target Start/End: Original strand, 29177488 - 29177751
Alignment:
| Q |
47 |
gaagcagagatacagtgtttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactac |
146 |
Q |
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| T |
29177488 |
gaagcaaagatacagtgtttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactac |
29177587 |
T |
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| Q |
147 |
ctgcttccatcccaatgttgatcttcatggcaacatatgcttggacatacttcaggtaatgtgaaatgatctaaggaggaacattttcatgagcaattgt |
246 |
Q |
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| T |
29177588 |
ctgcttccatcccaatgttgatcttcatggcaacatatgcttggacatacttcaggtaatgtgaaatgatctaaggaggaacattttcctgagcaattgt |
29177687 |
T |
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| Q |
247 |
tgttgaccttgttttggcatgccatactgaccttatttgtttgtttgtttataggataaatggt |
310 |
Q |
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| T |
29177688 |
tgttgaccttgttttggcatgccatactgaccttatttgtttgtttgtttataggataaatggt |
29177751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 29178046 - 29178018
Alignment:
| Q |
18 |
gattgctccaaagctgtgctgcttgtgga |
46 |
Q |
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| T |
29178046 |
gattgctccaaagctgtgctgcttgtgga |
29178018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 2055693 - 2055533
Alignment:
| Q |
47 |
gaagcagagatacagtgtttgaaggcacagattacaagttatcactgtcttttcctaatgattacccttttaaggctcccaaagtcaagtttgaaactac |
146 |
Q |
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| T |
2055693 |
gaagcaaagacactgtctttgaaggaacagaatacagattgtcactttcatttcccaatgagtatccttttaaggccccaaaggtcaaatttgacaccac |
2055594 |
T |
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| Q |
147 |
ctgcttccatcccaatgttgatcttcatggcaacatatgcttggacatacttcaggtaatg |
207 |
Q |
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| T |
2055593 |
atgcttccaccccaatgttgatttgcatggcaatatttgcttggacattcttcaggtaatg |
2055533 |
T |
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