View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_low_22 (Length: 283)
Name: NF11811_low_22
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 30409736 - 30409818
Alignment:
| Q |
1 |
tcacaagttttgttaacaagacccaagtaggatcaaattgataagttttaaagttaagggaaccaaagaagtatttaggtctt |
83 |
Q |
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| T |
30409736 |
tcacaagttttgttaacaagacccaagtaggatcaaattgataagttttaaagttaagggaaccaaaaaagtatttaggtctt |
30409818 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 188 - 241
Target Start/End: Original strand, 30409922 - 30409975
Alignment:
| Q |
188 |
tttctttaattattggtcctctaaacactctaatatcaattttaatctctgctt |
241 |
Q |
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| T |
30409922 |
tttctttaattattggtcctctaaacactctaatatcaattttagtctctgctt |
30409975 |
T |
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