View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_low_26 (Length: 248)
Name: NF11811_low_26
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 107 - 246
Target Start/End: Complemental strand, 30275057 - 30274918
Alignment:
| Q |
107 |
ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa |
206 |
Q |
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| T |
30275057 |
ttggttcaattattaattatgtgactcatcttataaagattttctaggtggtgcgtaatatatgctacaacattgtaaagtccaaactcaactcatataa |
30274958 |
T |
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| Q |
207 |
aatgtaattttattnnnnnnntatgtggtgacatagtaac |
246 |
Q |
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| T |
30274957 |
aatgtaattttattaaaaaaatatgtggtgacatagtaac |
30274918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 30275192 - 30275152
Alignment:
| Q |
14 |
caaaagattaaaaggagttaaataattgtagaactatattc |
54 |
Q |
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| T |
30275192 |
caaaagattaaaaggagttaaataattgtagaactatattc |
30275152 |
T |
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