View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_low_27 (Length: 246)
Name: NF11811_low_27
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 30274739 - 30274508
Alignment:
| Q |
1 |
ttctggggatcaacctctctttaatgaagacaaatctgtcattgtcacggtaggccatttatatgacatatgctaaatcaattacaacacatgtagcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30274739 |
ttctggggatcaacctctctttaatgaagacaaatctgtcattgtcacggtaggccatttatatgacatatgctaaatcaattacaacacatgtagcatc |
30274640 |
T |
|
| Q |
101 |
gacgttttatattgaaggcgtgagtgtcagacaacaacagtatagatacaacgctaacacatgtgataatatgcagtcatttttatgttatcactgatat |
200 |
Q |
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|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30274639 |
gacgctttatattgaaggcgtgagtgtcagacaacaacagtatagatacaacgctaacacatgtgataatatgcagtcatttttatgttatcattgatat |
30274540 |
T |
|
| Q |
201 |
ttacgtgtcagtgtcattgtcgtatctgatgt |
232 |
Q |
| |
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||||||||||||||||||||||||||| |||| |
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| T |
30274539 |
ttacgtgtcagtgtcattgtcgtatctaatgt |
30274508 |
T |
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