View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_low_28 (Length: 242)
Name: NF11811_low_28
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 46441281 - 46441075
Alignment:
| Q |
20 |
gtgatgccattgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagta |
119 |
Q |
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| T |
46441281 |
gtgatgtcattgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgtgta |
46441182 |
T |
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| Q |
120 |
cataaacgttagggcaatgagaactctctatgaaattaaggatgacaacaacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaat |
219 |
Q |
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| T |
46441181 |
cataaacgttagggcaatgagaactctctaggaaattaaggatgacaacaacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaat |
46441082 |
T |
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| Q |
220 |
atttgct |
226 |
Q |
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||||||| |
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| T |
46441081 |
atttgct |
46441075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 18331376 - 18331572
Alignment:
| Q |
30 |
tgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagtacataaacgtt |
129 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||| ||| |||||||||||||||||||||| || |||| | |||| || ||| |
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| T |
18331376 |
tgatcacttcgaggcgtttttcatggaaaaactcaagcgtcacattgaaacgacagatgtgttgaatcaatggcaacttcgatttgcctacaaaagtgtt |
18331475 |
T |
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| Q |
130 |
agggcaatgagaactctctatgaaattaaggatgacaacaacctcatcagcaaggttgtttagcattatgtccgaccaatgtgaaagaatatttgct |
226 |
Q |
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| T |
18331476 |
agggtaatgggaactcccaatgcaattcaggatgacaacagcctcgtcagcaaggttgctaagcataacatccgaccattgttgaagaatctttgct |
18331572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 17616367 - 17616322
Alignment:
| Q |
138 |
gagaactctctatgaaattaaggatgacaacaacctcatcagcaag |
183 |
Q |
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| T |
17616367 |
gagaactctcaatgcaattaaggattacaacaaactcatcagcaag |
17616322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Original strand, 722730 - 722762
Alignment:
| Q |
30 |
tgatcacttcgaggcgtttttcatggaaaaact |
62 |
Q |
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| T |
722730 |
tgatcaattcgaggcgtttttcatggaaaaact |
722762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 11574656 - 11574488
Alignment:
| Q |
27 |
cattgatcacttcgaggcgtttttcatggaaaaacttgagtgtcacatttctacgcaagatgtgttgaatcaatggcaaatttgattcgagtacataaac |
126 |
Q |
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||||||| |||||||||||||||| ||| ||||||| ||||||| ||| | | ||| |||||||||||||||||||||||||||| | |||| || |
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| T |
11574656 |
cattgattacttcgaggcgttttttatgaaaaaactcaagtgtcaaattgcggcacaatatgtgttgaatcaatggcaaatttgattggcctacaaaagt |
11574557 |
T |
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| Q |
127 |
gttagggcaatgagaactctctatgaaattaaggatgacaacaacctcatcagcaaggttgtttagcat |
195 |
Q |
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||||||| |||||||| | || ||| |||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
11574556 |
gttagggtaatgagaaatttcgatgcaattcaggatgacaacaacctcatcagcaaggttgcttagcat |
11574488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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