View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_low_30 (Length: 240)
Name: NF11811_low_30
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 29178046 - 29177826
Alignment:
| Q |
18 |
gattgctccaaagctgtgctgcttgtggatttagtggtgaactaatgtttggctctacattattaacaagttaaacaagaattaggaaaagtacaaagaa |
117 |
Q |
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| T |
29178046 |
gattgctccaaagctgtgctgcttgtggatttagtggtgaactaatgtttggctctacattattaacaagttaaacaagaattaggaaaagtacaaagaa |
29177947 |
T |
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| Q |
118 |
tacactaatctaatttgtttaaggtgcaagcctaaaatagttttaaacatatatgtgcatgtgaaaaacttgttaacagcatgcaaatttcagaaaacaa |
217 |
Q |
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| T |
29177946 |
tacactaatctaatttgtttaaggtgcaagcctaaaatagttttaaacatatatgtgcatgtgaaaaacttgttaacagcatgcaaatttcagaaaacaa |
29177847 |
T |
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| Q |
218 |
ttcattgaagtgtgcacaaaa |
238 |
Q |
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| T |
29177846 |
ttcattgaagtgtgcacaaaa |
29177826 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 2055203 - 2055263
Alignment:
| Q |
20 |
ttgctccaaagctgtgctgcttgtggatttagtggtgaactaatgtttggctctacattat |
80 |
Q |
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| T |
2055203 |
ttgctccaaagctgagctgcttgtggatttagcggcgagctaatgtttggctctaaattat |
2055263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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