View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11811_low_33 (Length: 229)

Name: NF11811_low_33
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11811_low_33
NF11811_low_33
[»] chr5 (1 HSPs)
chr5 (106-213)||(16570521-16570627)
[»] chr8 (2 HSPs)
chr8 (105-211)||(26835618-26835723)
chr8 (120-211)||(13580397-13580487)
[»] chr3 (2 HSPs)
chr3 (38-72)||(44989495-44989529)
chr3 (105-213)||(54417046-54417153)
[»] chr4 (1 HSPs)
chr4 (105-206)||(36071581-36071681)
[»] chr2 (1 HSPs)
chr2 (105-211)||(40876949-40877054)
[»] chr6 (2 HSPs)
chr6 (159-211)||(9815749-9815801)
chr6 (115-211)||(12174320-12174415)
[»] chr1 (1 HSPs)
chr1 (159-211)||(8246797-8246849)


Alignment Details
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 213
Target Start/End: Original strand, 16570521 - 16570627
Alignment:
Q  106 taatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataata 205  Q
    |||||||  |||||||||||| ||||||| ||||||||| | ||||||| || ||||||||||  || ||||| |||  |||||  ||||||||||||||    
T  16570521 taatcaaagttctctaaaaatatatttttaatagaattaatcaaagtgaatt-aaaaagaaatatatctatatggtaccaactaataagtaaaaataata 16570619  T
Q  206 aatttgat 213  Q
    | ||||||    
T  16570620 attttgat 16570627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 26835618 - 26835723
Alignment:
Q  105 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 204  Q
    ||||||||  |||||||||||| ||||||  ||||||||| | ||||  | ||||||| |||||  |||||||| ||| ||||||| |||||||||||||    
T  26835618 ataatcaaagttctctaaaaatatattttcaatagaattaataaaagaaaattaaaaa-gaaatatatttatattgtactaactattaagtaaaaataat 26835716  T
Q  205 aaatttg 211  Q
    || ||||    
T  26835717 aattttg 26835723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 211
Target Start/End: Original strand, 13580397 - 13580487
Alignment:
Q  120 taaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 211  Q
    ||||||| ||||||  ||||||||| | |||| || ||||||| |||||  ||||||||| || ||||||| ||||||||||||||| ||||    
T  13580397 taaaaatatattttcaatagaattaatcaaagcgaattaaaaa-gaaatatatttatataatactaactattaagtaaaaataataattttg 13580487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 44989529 - 44989495
Alignment:
Q  38 atgaatttgtaccctttaattatttgaaagtattc 72  Q
    |||||||||||||||||||||||||||||||||||    
T  44989529 atgaatttgtaccctttaattatttgaaagtattc 44989495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 54417046 - 54417153
Alignment:
Q  105 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 204  Q
    |||||||| ||||| ||||||  ||||||   |||||||| | ||||||| ||||||  |||||  || ||||||| | |||||| ||||||||||||||    
T  54417046 ataatcaaaattctttaaaaacatattttcagtagaattaatcaaagtgaattaaaag-gaaatgtatctatatagcactaactaccaagtaaaaataat 54417144  T
Q  205 aaatttgat 213  Q
    || ||||||    
T  54417145 aattttgat 54417153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 36071581 - 36071681
Alignment:
Q  105 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 204  Q
    ||||||||  |||||||||||| ||||||  || |||||| | ||||  | ||||||| |||||  || ||||||||| |||||||||||||||||||||    
T  36071581 ataatcaaagttctctaaaaatatattttcaattgaattaatcaaagaaaattaaaaa-gaaatatatctatatagtactaactatcaagtaaaaataat 36071679  T
Q  205 aa 206  Q
    ||    
T  36071680 aa 36071681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 40876949 - 40877054
Alignment:
Q  105 ataatcaagattctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataat 204  Q
    ||||||||| |||| ||||||| ||||||  ||||||||| |  ||   ||||||||| |||||  ||||||||| || |||||| ||||||||||||||    
T  40876949 ataatcaaggttctataaaaatatattttcaatagaattaatccaaacaagttaaaaa-gaaatatatttatataatactaactaccaagtaaaaataat 40877047  T
Q  205 aaatttg 211  Q
    || ||||    
T  40877048 aattttg 40877054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 9815749 - 9815801
Alignment:
Q  159 aaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 211  Q
    ||||||||||  || ||||||||||||||||  ||||||||||||||| ||||    
T  9815749 aaaaagaaatatatctatatagtattaactactaagtaaaaataataattttg 9815801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 12174415 - 12174320
Alignment:
Q  115 ttctctaaaaatgtatttttgatagaattagttaaagtgagttaaaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 211  Q
    |||||||||||| ||||||| ||| ||||| | |||  || ||||||| |||||  || ||||||||| ||||||  ||||||||||||||| ||||    
T  12174415 ttctctaaaaatatatttttaatataattaatcaaaacgaattaaaaa-gaaatatatctatatagtactaactactaagtaaaaataataattttg 12174320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 211
Target Start/End: Original strand, 8246797 - 8246849
Alignment:
Q  159 aaaaagaaatccatttatatagtattaactatcaagtaaaaataataaatttg 211  Q
    ||||||||||  || ||||||||| ||||||| ||||||||||||||| ||||    
T  8246797 aaaaagaaatatatctatatagtactaactattaagtaaaaataataattttg 8246849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University