View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_low_34 (Length: 223)
Name: NF11811_low_34
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_low_34 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23378019 - 23378241
Alignment:
| Q |
1 |
aatcattatgaagtaataaaaaataaagaaggttggggatgagagttttgtcgaatcaagtctttcattataaccaagagtagcaagacattaagcacat |
100 |
Q |
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| T |
23378019 |
aatcattatgaagtaataaaa-ataaagaaggttggggatgagagttttgtcgaatcaagtctgtcattataaccaagagtaacaagacattaagcacat |
23378117 |
T |
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| Q |
101 |
tgattgacttctcaatgaacat-aaacatctcacaatccaattatgttcacccataagagtcaccaaatcctcatgcacattttttcagtcctcactctt |
199 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23378118 |
tgattgacttctcaatgaatatgtttgatctcacaatccaattatgttcacccataagagtcaccaaatcctcatgcacattttttcagtcctcgctctt |
23378217 |
T |
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| Q |
200 |
aaatcaccttaaaaccctaaattc |
223 |
Q |
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||||||||| |||||||||||||| |
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| T |
23378218 |
aaatcacctcaaaaccctaaattc |
23378241 |
T |
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