View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_low_6 (Length: 522)
Name: NF11811_low_6
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 275 - 509
Target Start/End: Original strand, 2703201 - 2703434
Alignment:
| Q |
275 |
cctatgagtcgtctggatttgaataactacgataacaggtgctgttaatcttatcatatgaagactaataaataataaaacnnnnnnnnntgtgctttac |
374 |
Q |
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| T |
2703201 |
cctatgagtcgtctggatttgaataactacgataacaggtgctgttaatcttatcatatgaagactaataa-taaaacaaaaaaaaatattgtgctttac |
2703299 |
T |
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| Q |
375 |
gtggcggctgaattgtgtatttaagataagtgaaggagacaaagctccttgaactcttaaaagttcaaactctttgatagggacaaccactagcaagctt |
474 |
Q |
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| T |
2703300 |
gtggcggctgaattgtgtatttaagataagtgaaggagacaaagctccttgaactcttaaaagttcaaactctttgatagggacaaccactagcaagctt |
2703399 |
T |
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| Q |
475 |
ctctagaacatactgctcattttaacttttgtcct |
509 |
Q |
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| T |
2703400 |
ctctagaacatactgctcattttaacttttgtcct |
2703434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 2702970 - 2703072
Alignment:
| Q |
45 |
ctataacaaatagactctttatctcaatcacaatattagattatataatataaactgtatgacataattcagtaattgacctcaataaatagtgcattta |
144 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2702970 |
ctataacaaatagactctttatctcaatcacaatactagattatataatataaactgtatgacataatttagtaattgacctcaataaatagtgcattta |
2703069 |
T |
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| Q |
145 |
tca |
147 |
Q |
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| T |
2703070 |
tca |
2703072 |
T |
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