View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11811_low_7 (Length: 474)

Name: NF11811_low_7
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11811_low_7
NF11811_low_7
[»] chr4 (6 HSPs)
chr4 (15-456)||(28787952-28788389)
chr4 (15-121)||(24856229-24856335)
chr4 (15-121)||(24853338-24853444)
chr4 (15-157)||(51246614-51246749)
chr4 (15-157)||(17525460-17525597)
chr4 (15-121)||(28787002-28787106)
[»] scaffold0406 (1 HSPs)
scaffold0406 (15-121)||(6272-6378)
[»] chr7 (1 HSPs)
chr7 (15-121)||(22622375-22622481)
[»] chr5 (5 HSPs)
chr5 (15-102)||(5046440-5046527)
chr5 (15-102)||(5047211-5047298)
chr5 (15-102)||(5047982-5048069)
chr5 (15-90)||(5663780-5663855)
chr5 (64-121)||(5664821-5664877)
[»] chr8 (1 HSPs)
chr8 (31-121)||(1275201-1275291)
[»] chr3 (3 HSPs)
chr3 (15-102)||(12738183-12738270)
chr3 (15-102)||(12739334-12739421)
chr3 (15-67)||(15023051-15023103)
[»] chr2 (2 HSPs)
chr2 (23-157)||(20978804-20978940)
chr2 (29-117)||(33798848-33798936)
[»] chr1 (4 HSPs)
chr1 (15-121)||(22055466-22055571)
chr1 (15-95)||(22056567-22056646)
chr1 (22-123)||(29371902-29372004)
chr1 (125-157)||(22056518-22056550)
[»] scaffold0272 (1 HSPs)
scaffold0272 (82-121)||(3559-3598)


Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 15 - 456
Target Start/End: Original strand, 28787952 - 28788389
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaa 114  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28787952 caaaggcctagattattctagttctagaaacatcttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaa 28788051  T
Q  115 taatatttaatattgaaggcttcaccatatgatattctctcctaatttctaatgtgtgtactcttatccttactactattctctccaccactacagctcc 214  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28788052 taatatttaatattgaaggcttcaccacatgatattctctcctaatttctaatgtgtgtcctcttatccttactactattctctccaccactacagctcc 28788151  T
Q  215 ctaagctatcctctccaccactacagctccctaggctatatatattttannnnnnnnccaacagaagtctactatgcagcttgttttcttctatttattt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||         |||||||||||||||||||||||||||||||||||||||||||    
T  28788152 ctaagctatcctctccaccactacagctccctaggctatatatatatt----tttttccaacagaagtctactatgcagcttgttttcttctatttattt 28788247  T
Q  315 cttgtatgtacttgctgctttccataaaactggttgttaccagagatagatattgacatattgtataccttaaattgtactgctactttgaaatttaagt 414  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28788248 cttgtatgtacttgttgctttccataaaactcgttgttaccagagatagatattaacatattgtataccttaaattgtactgctactttgaaatttaagt 28788347  T
Q  415 gaaaaatttcatttcaatcttattactcaatcatcatcgtgt 456  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28788348 gaaaaatttcatttcaatcttattactcaatcatcatcgtgt 28788389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 24856229 - 24856335
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaa 114  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  || ||||||||||||| ||||||||||||||||||||||    
T  24856229 caaaggcctagattattctagttctagaaacattttctaacacctataaatagacttattaggatgcaattgtattccagcctttaagatgcaatgtcaa 24856328  T
Q  115 taatatt 121  Q
    |||||||    
T  24856329 taatatt 24856335  T

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Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 24853338 - 24853444
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaa 114  Q
    |||||||||| ||||||||||||||| |||||| ||| ||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||    
T  24853338 caaaggcctaaattattctagttctaaaaacatcttctaacacctataaatagacttatttggatgcaattgtattcaagcctttaagatgcaatgtcaa 24853437  T
Q  115 taatatt 121  Q
    |||||||    
T  24853438 taatatt 24853444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 51246614 - 51246749
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaa 114  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||||||| ||||| |||||||||||||||||||||||||||||  |||| ||||||||    
T  51246614 caaaggcctagattattctagttctagaaacatctacaagcacctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtcaa 51246713  T
Q  115 taatatttaatattgaaggcttcaccatatgatattctctcct 157  Q
           |||||||||||||||||||| || ||||||||||||    
T  51246714 -------taatattgaaggcttcaccaaatcatattctctcct 51246749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 17525597 - 17525460
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaa--tgtc 112  Q
    ||||||||||||||||||||||||||||||||| | ||| | | ||||||||||| |||||| ||| |||||||||||||||||| ||||||||  ||||    
T  17525597 caaaggcctagattattctagttctagaaacatctacaagcgcttataaatagacttatatgtgtgaaattgtattcaagcctttgagatgcaatgtgtc 17525498  T
Q  113 aataatatttaatattgaaggcttcaccatatgatattctctcct 157  Q
    ||       ||||||||||||||||||||||| ||||||||||||    
T  17525497 aa-------taatattgaaggcttcaccatatcatattctctcct 17525460  T

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Target: chr4; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 28787002 - 28787106
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaa 114  Q
    |||||||||| ||||||  |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||  |    
T  28787002 caaaggcctaaattatt--agttctagaaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagccttttagatgcaatgtata 28787099  T
Q  115 taatatt 121  Q
    |||||||    
T  28787100 taatatt 28787106  T

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Target: scaffold0406 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 15 - 121
Target Start/End: Original strand, 6272 - 6378
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaa 114  Q
    ||||||||||||||||||||||||||||||||  ||||| ||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||    
T  6272 caaaggcctagattattctagttctagaaacagcttcaagcacctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtcaa 6371  T
Q  115 taatatt 121  Q
    |||||||    
T  6372 taatatt 6378  T

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Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 22622481 - 22622375
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaa 114  Q
    ||||| |||||||||||||| |||||||||||| ||||  ||| ||||||||| | ||||||||||||||||||||||||||||| |||||| |||||||    
T  22622481 caaagacctagattattctaattctagaaacatcttcaggcacttataaataggcttatatgggtgcaattgtattcaagcctttgagatgccatgtcaa 22622382  T
Q  115 taatatt 121  Q
    |||||||    
T  22622381 taatatt 22622375  T

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Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 5046440 - 5046527
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaag 102  Q
    ||||||||||||||||||||||| ||||||||| | ||| ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  5046440 caaaggcctagattattctagttttagaaacatctacaagcacctataaatagacttatatgagtgcaattgtattcaagcctttaag 5046527  T

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Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 5047211 - 5047298
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaag 102  Q
    ||||||||||||||||||||||| ||||||||| | ||| |||||||||||| || |||||| |||||||||||||||||||||||||    
T  5047211 caaaggcctagattattctagttttagaaacatctacaagcacctataaatatacttatatgagtgcaattgtattcaagcctttaag 5047298  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 5047982 - 5048069
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaag 102  Q
    ||||||||||||||||||||||| || |||||| | ||| |||||||||||| || |||||| |||||||||||||||||||||||||    
T  5047982 caaaggcctagattattctagttttaaaaacatctacaagcacctataaatatacttatatgagtgcaattgtattcaagcctttaag 5048069  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 5663855 - 5663780
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtatt 90  Q
    |||||||||||| | |||||||| ||||||||| ||||| ||| ||||||||||  ||||||||||| ||||||||    
T  5663855 caaaggcctagactcttctagttttagaaacatcttcaatcacttataaatagaattatatgggtgcgattgtatt 5663780  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 5664877 - 5664821
Alignment:
Q  64 atagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 121  Q
    |||||| ||||||||||||||||||||||||| ||||| || ||||| ||||||||||    
T  5664877 atagacttatatgggtgcaattgtattcaagcttttaa-atacaatgacaataatatt 5664821  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 1275291 - 1275201
Alignment:
Q  31 tctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataatatt 121  Q
    ||||||||||||||||  ||||| ||||||||| || |  ||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  1275291 tctagttctagaaacaccttcaagcacctataagtataggtatatgggtgcaattgtattcaaacgtttaagatgcaatgtcaataatatt 1275201  T

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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 12738183 - 12738270
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaag 102  Q
    |||| |||||||| ||| ||||||||||||||| | ||| |||||||||||| || ||| ||||||||||||||||||||||||||||    
T  12738183 caaaagcctagataattttagttctagaaacatctacaagcacctataaataaacttatttgggtgcaattgtattcaagcctttaag 12738270  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 12739334 - 12739421
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaag 102  Q
    |||| |||||||||||| ||||||||||||||| | ||| || |||||||||||  ||| ||| ||||||||||||||||||||||||    
T  12739334 caaaagcctagattattttagttctagaaacatctacaagcatctataaatagaattatttggatgcaattgtattcaagcctttaag 12739421  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 15023051 - 15023103
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatag 67  Q
    |||| |||||||||||| ||||||||||||||| | ||| |||||||||||||    
T  15023051 caaatgcctagattattttagttctagaaacatctacaagcacctataaatag 15023103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 20978940 - 20978804
Alignment:
Q  23 tagattattctagttctagaaacattttcaaac-acctataaatagacatatatgggtgcaattgtattcaagccttta--------agatgcaatgtca 113  Q
    ||||||||||||||||||||||||| | ||||  ||||||||||| || ||||||||||| ||| ||||||||||||||        |||||||||||||    
T  20978940 tagattattctagttctagaaacatctacaaagtacctataaataaacttatatgggtgccattatattcaagcctttaaacctttgagatgcaatgtca 20978841  T
Q  114 ataatatttaatattgaaggcttcaccatatgatattctctcct 157  Q
    |       ||||||||||||||||||||||| ||||||||||||    
T  20978840 a-------taatattgaaggcttcaccatatcatattctctcct 20978804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 117
Target Start/End: Complemental strand, 33798936 - 33798848
Alignment:
Q  29 attctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataa 117  Q
    |||||| |||||||||||| |||||  | ||||||||||| |   ||  |||||||||||||||||||||| ||||| || ||||||||    
T  33798936 attctacttctagaaacatcttcaaggatctataaatagataagcatatgtgcaattgtattcaagcctttgagatgtaacgtcaataa 33798848  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 22055571 - 22055466
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaa 114  Q
    ||||| ||||||||||| ||||||||||| ||| ||||| ||| ||||||||||| |  |  |||||||||||| |||||||||| |||||||||||| |    
T  22055571 caaagacctagattattttagttctagaatcatcttcaagcacttataaatagac-tggaatggtgcaattgtagtcaagcctttcagatgcaatgtcga 22055473  T
Q  115 taatatt 121  Q
    |||||||    
T  22055472 taatatt 22055466  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 22056646 - 22056567
Alignment:
Q  15 caaaggcctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgcaattgtattcaagc 95  Q
    |||| ||||||||||||||||||||||||| || ||||| |||||||||| |||| || |  |||||||||| ||||||||    
T  22056646 caaatgcctagattattctagttctagaaatatcttcaagcacctataaagagactta-aaaggtgcaattgcattcaagc 22056567  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 29371902 - 29372004
Alignment:
Q  22 ctagattattctagttctagaaacattttcaaacacctataaatagacatatatgggtgc-aattgtattcaagcctttaagatgcaatgtcaataatat 120  Q
    ||||||||||| |||  || |||||| ||||| ||| ||||||||||  ||||||||||| ||||||||  ||||||||||||| |||| |||| || ||    
T  29371902 ctagattattcaagtattataaacatcttcaagcacttataaatagatttatatgggtgcaaattgtatgtaagcctttaagatacaatatcaagaacat 29372001  T
Q  121 tta 123  Q
    |||    
T  29372002 tta 29372004  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 22056550 - 22056518
Alignment:
Q  125 tattgaaggcttcaccatatgatattctctcct 157  Q
    |||||||||||||||||||| ||||||||||||    
T  22056550 tattgaaggcttcaccatattatattctctcct 22056518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 3598 - 3559
Alignment:
Q  82 aattgtattcaagcctttaagatgcaatgtcaataatatt 121  Q
    |||||||||||| ||||| |||||||||||||||||||||    
T  3598 aattgtattcaaacctttgagatgcaatgtcaataatatt 3559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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