View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11811_low_8 (Length: 473)
Name: NF11811_low_8
Description: NF11811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11811_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 461
Target Start/End: Complemental strand, 34995758 - 34995326
Alignment:
| Q |
18 |
taatctacagcaagaaggtgaccttctaactttatcatttgaatgattgtgcactccattaagaatactaaatgaccggtcattaaattttgacaaataa |
117 |
Q |
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| T |
34995758 |
taatctacagcaagaaggtgaccttctaactttatccattgaatgattgtgcactccattaagaatactagatgatcggtcattaaattttgacaaataa |
34995659 |
T |
|
| Q |
118 |
taattacgcaatctaaattgacattcacgtttcctttaacacatgtcttctcgatttaatttcttcttagttcctctgtacataccatctctttcacaat |
217 |
Q |
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| T |
34995658 |
t---tacgcaatctaaattgacattcacgtttcctttagcacgtgtcttctcgatttaattttttcttagttcctctgtacataccatctctttcacaat |
34995562 |
T |
|
| Q |
218 |
ccaacactaacattggcgaccttctttcatgacgatgatgagaactctttatattaacgtaaattcggtctttattgcttgttgacgaacccaactaatc |
317 |
Q |
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| T |
34995561 |
ccaacactaacattggcgacctt---tcatggcaaagatgagaactctttatattaacgtaaattcggtctttattgcttgttgacgaacccaactaatc |
34995465 |
T |
|
| Q |
318 |
acatcatatcatatctaactttctatttatcttctatgaaaaggtaagacatcatatctaatcattatcacgaagttttgaaacactagaaccaacgatt |
417 |
Q |
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| T |
34995464 |
a-----tatcatatctaactttctatttatcttctatgaaaaggtaagacatcatatctaatcattatcacgaagttttgaaacaccagaaccaacgatt |
34995370 |
T |
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| Q |
418 |
ttgtctttagaatgaacggaagctttgacaatgtttgttttcat |
461 |
Q |
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| T |
34995369 |
ttgtctttagaatgaacggaagctttgacaatgtttgttttcat |
34995326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 310
Target Start/End: Original strand, 6569049 - 6569152
Alignment:
| Q |
208 |
ctttcacaatccaacactaacattggcgaccttctttcatgacgatgatgagaactctttat-attaacgtaaattcggtctttattgcttgttgacgaa |
306 |
Q |
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||||||||| ||||||||||||||||||||||||||||| || |||||| || ||| ||| ||||| ||||||||| |||| || |||||| | ||| |
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| T |
6569049 |
ctttcacaacccaacactaacattggcgaccttctttcaccaccatgatgggatttctctataattaaggtaaattcgacctttgtttcttgttaaggaa |
6569148 |
T |
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| Q |
307 |
ccca |
310 |
Q |
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|||| |
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| T |
6569149 |
ccca |
6569152 |
T |
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