View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11812_high_1 (Length: 889)
Name: NF11812_high_1
Description: NF11812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11812_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 655; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 150 - 824
Target Start/End: Original strand, 46980779 - 46981453
Alignment:
| Q |
150 |
tcgaacccattttccatccaacgattcacctcactacaacactttcaatcgtcccactcctagaccaacacgtggcagaggtggttacggttttggtcac |
249 |
Q |
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| T |
46980779 |
tcgaacccattttccatccaacgattcacctcactacaacactttcaatcgtcccactcctagaccaacacgtggcagaggtggttatggttttggtcac |
46980878 |
T |
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| Q |
250 |
agccctgctccgccacgtcattactctcgtcctgaacaacaacaaccacgatactacgatccttctcaaaaccggtcaccgtttgaaacaaacggtgaaa |
349 |
Q |
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| T |
46980879 |
agccctgctccgccacgtcattactctcgtcctgaacaacaacaaccacgatactacgatccttctcaaaaccggtcaccgtttgaaacaaacggtgaaa |
46980978 |
T |
|
| Q |
350 |
aggttgaaaacggcgtcgttgcgaattttgaagcgtatgaatcgataccggtggaagcgacgggagagaatgttccaccgccggtgaatctattttccga |
449 |
Q |
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| T |
46980979 |
aggttgaaaacggcgtcgttgcgaattttgaagcgtatgaatcgataccggtggaagcgacgggagagaatgttccaccgccggtgaatctatttgccga |
46981078 |
T |
|
| Q |
450 |
aacggagcttcatgaagatttgaagaataatattgagagatgtaagtatgtgaaacctactccggttcagcgttacgcgatccccattgctgttgctggt |
549 |
Q |
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| T |
46981079 |
aacggagcttcatgaagatttgaagaataatattgagagatgtaagtatgtgaaacctactccggttcagcgttacgcgatccccattgctgttgctggt |
46981178 |
T |
|
| Q |
550 |
agagaccttatggcttgtgctcaaactggctcgggtaaaacggcggcgttttgttttccgatcatatctgggatcatgaaagaacgtttagcttctggtt |
649 |
Q |
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| T |
46981179 |
agagaccttatggcttgtgctcaaactggctcgggtaaaactgcggcgttttgttttccgatcatatctgggatcatgaaagaacgtttagcttctggtt |
46981278 |
T |
|
| Q |
650 |
tgttgccacgtggaggtggtggtgattccgatgttgcttttcccactgcactcatcttgtctccaaccagggagttgtcttgccaggtttttgttcttaa |
749 |
Q |
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| T |
46981279 |
tgttgccacgtggaggtggtgttgattccgatgttgcttttcccactgcactcatcttgtctccaactagggagttgtcttgccaggtttttgttcttaa |
46981378 |
T |
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| Q |
750 |
tcctctattttttattggtctttaattttagaatgggtttagctctatagcaccgaaacttatgatcgaagatat |
824 |
Q |
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| T |
46981379 |
tcctctattttttattggtctttaattttagaatgggtttagctctatagcaccgaaacttatgatcgaagatat |
46981453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 46980639 - 46980729
Alignment:
| Q |
1 |
tattcattcactatggcagcagcatggtctgattcaactgctcaaaaacaaaatcgtccatctcaacaactttacgttccacaattccgtt |
91 |
Q |
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| T |
46980639 |
tattcattcactatggcagcagcatggtctgattcaactactcaaaaacaaaatcgtccatctcaacaactttacgttccacaattccgtt |
46980729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 822 - 871
Target Start/End: Original strand, 46981488 - 46981537
Alignment:
| Q |
822 |
tattatgtcattttcttatattactaccagtgttggtgttggtgtctgtg |
871 |
Q |
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| T |
46981488 |
tattatgtcattttcttatattactaccagtgttggtgttggtgtctgtg |
46981537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 740551 - 740637
Alignment:
| Q |
150 |
tcgaacccattttccatccaacgattcacctcactacaacactttcaatcgtcccactcctagaccaacacgtggcagaggtggtta |
236 |
Q |
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| T |
740551 |
tcgaatccattttccatccaacgattcacctcactacaacactttcaatccccccactcccagaccgccacgtggcagaggcggtta |
740637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 740405 - 740494
Alignment:
| Q |
2 |
attcattcactatggcagcagcatggtctgattcaactgctcaaaaacaaaatcgtccatctcaacaactttacgttccacaattccgtt |
91 |
Q |
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|||||||||||||||||| | ||||| |||||||||| |||||||||||||| || |||||||| ||||||||||| || ||||||||| |
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| T |
740405 |
attcattcactatggcagtaacatggcgtgattcaactactcaaaaacaaaattgttcatctcaaaaactttacgttacataattccgtt |
740494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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