View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11812_low_10 (Length: 226)
Name: NF11812_low_10
Description: NF11812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11812_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 6923607 - 6923799
Alignment:
| Q |
16 |
acatcatccttcttgtttccaaacctatcaaaactagctaccttggccaccactttacagtccccaaaccacacattattcaacgctttcaacagtttat |
115 |
Q |
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| T |
6923607 |
acatcatccttcttgtttccaaacctatcaaaactagctaccttgaccaccactttacagtccccaaaccacacattattcaacgctttcaacagtttat |
6923706 |
T |
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| Q |
116 |
ccacatctttcactttactgtaacgcccaaagccaaacacaccactattaatatttcttttctttgctaaatagacatcctccatgataccac |
208 |
Q |
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| T |
6923707 |
ccacatctttcactttactgtaatgcccaaaaccaaacacaccactattaatatttcttttctttgctaaatagacatcctccatgataccac |
6923799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 19158774 - 19158866
Alignment:
| Q |
42 |
atcaaaactagctaccttggccaccactttacagtccccaaaccacacattattcaacgctttcaacagtttatccacatctttcactttact |
134 |
Q |
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| T |
19158774 |
atcaaaactggcaaccttggctactaccttccagtcaccaaaccaaacgttgtttaacgctttcaaaagtttctcaacatccttcaccttact |
19158866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 23 - 122
Target Start/End: Complemental strand, 20505397 - 20505298
Alignment:
| Q |
23 |
ccttcttgtttccaaacctatcaaaactagctaccttggccaccactttacagtccccaaaccacacattattcaacgctttcaacagtttatccacatc |
122 |
Q |
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| T |
20505397 |
ccttcttgttaccaaaccgatcaaaactagctaccttagccaccactttacagtccccaaaccacacatttttcagtgcctttaaaagtttatcgacatc |
20505298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 38 - 206
Target Start/End: Complemental strand, 18916712 - 18916544
Alignment:
| Q |
38 |
acctatcaaaactagctaccttggccaccactttacagtccccaaaccacacattattcaacgctttcaacagtttatccacatctttcactttactgta |
137 |
Q |
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||||||||||| | || ||||| ||||||||||| || || |||||||||||||| || | ||| || ||||| || |||||||||||||| ||| || |
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| T |
18916712 |
acctatcaaaagtcgcaaccttagccaccactttccaatcaccaaaccacacattgtttaccgcctttaacagcttctccacatctttcaccttagcata |
18916613 |
T |
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| Q |
138 |
acgcccaaagccaaacacaccactattaatatttcttttctttgctaaatagacatcctccatgatacc |
206 |
Q |
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| T |
18916612 |
acgcacaaaaccaaacgcaccaccattaacatttcttttgcgtgctaaataaacatcctccaagatacc |
18916544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 40 - 200
Target Start/End: Complemental strand, 22556319 - 22556159
Alignment:
| Q |
40 |
ctatcaaaactagctaccttggccaccactttacagtccccaaaccacacattattcaacgctttcaacagtttatccacatctttcactttactgtaac |
139 |
Q |
| |
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||||||||||||| || || ||||||| || || || ||||||| | ||||||||| || ||||| ||||| || |||||||| ||||||| ||||| |
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| T |
22556319 |
ctatcaaaactagacactttatccaccacgttccactcaccaaaccttaaattattcaaagcgttcaaaagtttgtcaacatctttaactttacagtaac |
22556220 |
T |
|
| Q |
140 |
gcccaaagccaaacacaccactattaatatttcttttctttgctaaatagacatcctccat |
200 |
Q |
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|| |||||||||| ||| ||| ||||| ||| ||||| |||| ||||| ||||||||||| |
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| T |
22556219 |
gcacaaagccaaaaacaacaccattaacattcctttttcttgccaaatacacatcctccat |
22556159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 8253748 - 8253922
Alignment:
| Q |
34 |
ccaaacctatcaaaactagctaccttggccaccactttacagtccccaaaccacacattattcaacgctttcaacagtttatccacatctttcactttac |
133 |
Q |
| |
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||||| |||| |||||| || || ||||| ||||| || || || |||||||| ||||| || | ||| |||||| || || ||||| ||||| || | |
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| T |
8253748 |
ccaaatctataaaaactcgcaactttggctaccaccttccaatctccaaaccaaacattgttaatagctctcaacaacttctctacatccttcaccttcc |
8253847 |
T |
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| Q |
134 |
tgtaacgcccaaagccaaacacaccactattaatatttcttttctttgctaaatagacatcctccatgataccac |
208 |
Q |
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| || | | |||| ||||||||||| | ||||| ||||| |||| | |||||||| ||||||||||| ||||||| |
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| T |
8253848 |
tatatctcacaaaaccaaacacaccgccattaacatttcgtttcctagctaaatacacatcctccataataccac |
8253922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 95
Target Start/End: Original strand, 14321702 - 14321755
Alignment:
| Q |
42 |
atcaaaactagctaccttggccaccactttacagtccccaaaccacacattatt |
95 |
Q |
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||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |
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| T |
14321702 |
atcaaaactagacaccttagccaccactttacagtcaccaaaccagacattatt |
14321755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 160
Target Start/End: Original strand, 21584111 - 21584243
Alignment:
| Q |
28 |
ttgtttccaaacctatcaaaactagctaccttggccaccactttacagtccccaaaccacacattattcaacgctttcaacagtttatccacatctttca |
127 |
Q |
| |
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||||| ||||| || || ||||||||| |||| || ||||| | || || |||||||||||||| |||||||| ||||| | ||||| |||||| | | |
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| T |
21584111 |
ttgttaccaaatctgtcgaaactagcttccttagcaaccaccctccaatcaccaaaccacacattgttcaacgccttcaataatttatgtacatctctaa |
21584210 |
T |
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| Q |
128 |
ctttactgtaacgcccaaagccaaacacaccac |
160 |
Q |
| |
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| || | ||||||| |||| ||||| ||||||| |
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| T |
21584211 |
cctttccgtaacgcacaaaaccaaaaacaccac |
21584243 |
T |
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