View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11812_low_2 (Length: 392)
Name: NF11812_low_2
Description: NF11812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11812_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 4243491 - 4243224
Alignment:
| Q |
1 |
ccattagctgtgacattgacactcgcttattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactttctgcatgtgaaactatgggatcag |
100 |
Q |
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| T |
4243491 |
ccattagctgtgacattgacactcgcttattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactttctgcatgtgaaactatgggatcag |
4243392 |
T |
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| Q |
101 |
ctactactatttgcactgataagacaggtactatttgaaatacaaaatttagttatattctgttaatagtcatagatagttaatttattgattcttgact |
200 |
Q |
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| T |
4243391 |
ctactactatttgcactgataagacaggtactatttgaaatacaaaatttagttatattctgttaatagtcatagatagttaatttattgattcttgact |
4243292 |
T |
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| Q |
201 |
tactctttatacatacaatatttcacatactcaccttgatcatgtgatttgtaacaggtacactcact |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243291 |
tactctttatacatacaatatttcacatactcaccttgatcatgtgatttgtaacaggtacactcact |
4243224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 260 - 379
Target Start/End: Complemental strand, 4237226 - 4237107
Alignment:
| Q |
260 |
acactcactatgaatcaaatgaaggtgacaaagttttggcttggtttagaaccaatggaagttggtacatattcaaatgttgatccatttgttcttcaat |
359 |
Q |
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| T |
4237226 |
acactcactatgaatcaaatgaaggtgacaaagttttggcttggtttagaaccaatggaagttggtacatattcaaatgttgatccatttgttcttcaat |
4237127 |
T |
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| Q |
360 |
tgatcaaagaaggagtttct |
379 |
Q |
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| T |
4237126 |
tgatcaaagaaggagtttct |
4237107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 6186547 - 6186413
Alignment:
| Q |
1 |
ccattagctgtgacattgacactcgcttattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactttctgcatgtgaaactatgggatcag |
100 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| | |
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| T |
6186547 |
ccattagctgtgacattgacacttgcatattcaatgaagaaaatgatggctgatgaagcaatggtgagaaaactctctgcatgtgagactatgggatctg |
6186448 |
T |
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| Q |
101 |
ctactactatttgcactgataagacaggtactatt |
135 |
Q |
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| T |
6186447 |
ctactactatttgcaccgacaaaacaggtactatt |
6186413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 243 - 376
Target Start/End: Complemental strand, 6186336 - 6186203
Alignment:
| Q |
243 |
tgtgatttgtaacaggtacactcactatgaatcaaatgaaggtgacaaagttttggcttggtttagaaccaatggaagttggtacatattcaaatgttga |
342 |
Q |
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|||||||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||| ||||| |||||| |||||| ||| ||||||| |||||||| |
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| T |
6186336 |
tgtgatttgtaataggtacacttactttgaatcagatgaaggtgacaaagttttggctcggttttgaaccattggaagaaggtgcatattccaatgttga |
6186237 |
T |
|
| Q |
343 |
tccatttgttcttcaattgatcaaagaaggagtt |
376 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
6186236 |
tccatctgttcttcaattgatcaaagaaggagtt |
6186203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 38358162 - 38358032
Alignment:
| Q |
1 |
ccattagctgtgacattgacactcgcttattcaatgaagaaaatgatggctgatcaagcaatggtgagaaaactttctgcatgtgaaactatgggatcag |
100 |
Q |
| |
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||||| ||||||||| | || || ||||| || ||||| | ||||||||| ||||| || |||||||| |||||||| || ||||||||||||||||||| |
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| T |
38358162 |
ccattggctgtgacactaactcttgcttactccatgaaaagaatgatggcagatcatgctatggtgaggaaactttcagcttgtgaaactatgggatcag |
38358063 |
T |
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| Q |
101 |
ctactactatttgcactgataagacaggtac |
131 |
Q |
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| || ||| ||||||||||| |||||||| |
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| T |
38358062 |
caacagttatctgcactgataaaacaggtac |
38358032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 1610575 - 1610630
Alignment:
| Q |
73 |
ctttctgcatgtgaaactatgggatcagctactactatttgcactgataagacagg |
128 |
Q |
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|||||||||||||| |||||||| ||||||| | |||||||||||||||||||| |
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| T |
1610575 |
ctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacagg |
1610630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 1624960 - 1625015
Alignment:
| Q |
73 |
ctttctgcatgtgaaactatgggatcagctactactatttgcactgataagacagg |
128 |
Q |
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|||||||||||||| |||||||| ||||||| | |||||||||||||||||||| |
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| T |
1624960 |
ctttctgcatgtgagactatgggttcagctagttgcatttgcactgataagacagg |
1625015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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