View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11812_low_3 (Length: 377)
Name: NF11812_low_3
Description: NF11812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11812_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 366
Target Start/End: Complemental strand, 11292397 - 11292047
Alignment:
| Q |
16 |
agtcacacatcaacaggtggattcttatcacattgtggttggaattcaacgattgaggctattggacgtgggattccattgttggcttggcctataaggg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11292397 |
agtcacacatcaacaggtggattcttatcacattgtggttggaattcaacgattgaggctattggacgtgggattccattgttggcttggcctataaggg |
11292298 |
T |
|
| Q |
116 |
gtgatcaataccataatgccaagttggtggtgagtcgtctcagggtgggttatatggtctctaatgatctatcagaaaaggtggccaaggatgaaatagt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11292297 |
gtgatcaataccataatgccaagttggtggtgagtcgtctcagggtgggttatatggtctctaatgatctatcagaaaaggtggccaaggatgaaatagt |
11292198 |
T |
|
| Q |
216 |
tatgggaatagagaggttgatgggtgatgaagaaatgaagaaaactgctgaggttcgtagtgctaagtttcagagtgggtttccaagaagttcagtagct |
315 |
Q |
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| T |
11292197 |
tatgggaatagagaggttgatgggtgatgaagaaatgaagaaaactgctgaggttcttagtgctaagtttcggagtgggtttccaagaagttcattagct |
11292098 |
T |
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| Q |
316 |
gccttagatgcttttaaggattttatcaaacagagatttgtttaggttcat |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11292097 |
gccttagatgcttttaaggattttatcaaacagagatttgtttaggttcat |
11292047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 3719452 - 3719508
Alignment:
| Q |
16 |
agtcacacatcaacaggtggattcttatcacattgtggttggaattcaacgattgag |
72 |
Q |
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| T |
3719452 |
agtcacacttcaacaggtggatttttaacacattgtggttggaattcgacgcttgag |
3719508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 3770253 - 3770203
Alignment:
| Q |
15 |
aagtcacacatcaacaggtggattcttatcacattgtggttggaattcaac |
65 |
Q |
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|||||||| |||||||||||||| ||| |||||||||||||||||||||| |
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| T |
3770253 |
aagtcacaattcaacaggtggatttttaacacattgtggttggaattcaac |
3770203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 3707942 - 3707999
Alignment:
| Q |
15 |
aagtcacacatcaacaggtggattcttatcacattgtggttggaattcaacgattgag |
72 |
Q |
| |
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|||||||| |||||||||||||| ||| ||||||||||||||||||| ||| ||||| |
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| T |
3707942 |
aagtcacaattcaacaggtggatttttaacacattgtggttggaattcgacgcttgag |
3707999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 3701176 - 3701222
Alignment:
| Q |
16 |
agtcacacatcaacaggtggattcttatcacattgtggttggaattc |
62 |
Q |
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|||||||| ||||| |||||||| ||| ||||||||||||||||||| |
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| T |
3701176 |
agtcacacttcaaccggtggatttttaacacattgtggttggaattc |
3701222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 33005161 - 33005115
Alignment:
| Q |
19 |
cacacatcaacaggtggattcttatcacattgtggttggaattcaac |
65 |
Q |
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||||| ||||| |||||||| ||| |||||||||||||||||||||| |
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| T |
33005161 |
cacacttcaactggtggatttttaacacattgtggttggaattcaac |
33005115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 65
Target Start/End: Original strand, 41562617 - 41562657
Alignment:
| Q |
25 |
tcaacaggtggattcttatcacattgtggttggaattcaac |
65 |
Q |
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| T |
41562617 |
tcaactggtggatttttatctcattgtggttggaattcaac |
41562657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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