View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11812_low_5 (Length: 316)

Name: NF11812_low_5
Description: NF11812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11812_low_5
NF11812_low_5
[»] chr8 (15 HSPs)
chr8 (7-309)||(20694174-20694476)
chr8 (9-69)||(1784174-1784234)
chr8 (9-66)||(6590868-6590925)
chr8 (10-63)||(9428063-9428116)
chr8 (9-69)||(1156999-1157059)
chr8 (9-57)||(9503627-9503675)
chr8 (10-69)||(40223308-40223367)
chr8 (7-53)||(4102002-4102048)
chr8 (12-69)||(10184643-10184700)
chr8 (16-57)||(12354458-12354499)
chr8 (9-57)||(1784096-1784144)
chr8 (9-57)||(9503536-9503584)
chr8 (9-69)||(11322647-11322706)
chr8 (9-53)||(12328787-12328831)
chr8 (9-53)||(14110167-14110211)
[»] chr6 (15 HSPs)
chr6 (9-69)||(5069935-5069995)
chr6 (14-71)||(29400660-29400717)
chr6 (9-69)||(862907-862966)
chr6 (9-69)||(24252966-24253026)
chr6 (14-69)||(16121055-16121110)
chr6 (15-69)||(7055649-7055703)
chr6 (9-51)||(7632855-7632897)
chr6 (9-51)||(26388204-26388246)
chr6 (20-69)||(3633706-3633755)
chr6 (24-57)||(10355900-10355933)
chr6 (14-59)||(22397902-22397947)
chr6 (9-57)||(674135-674183)
chr6 (13-69)||(14589632-14589688)
chr6 (9-69)||(14623286-14623346)
chr6 (14-50)||(17773515-17773551)
[»] chr3 (11 HSPs)
chr3 (9-69)||(1779578-1779638)
chr3 (9-69)||(16867613-16867673)
chr3 (9-57)||(18093785-18093833)
chr3 (12-69)||(1779489-1779546)
chr3 (9-69)||(36344521-36344581)
chr3 (10-69)||(26601958-26602017)
chr3 (15-69)||(27786547-27786601)
chr3 (12-69)||(16867706-16867763)
chr3 (17-70)||(26331309-26331362)
chr3 (25-69)||(36151266-36151309)
chr3 (9-57)||(55121181-55121229)
[»] chr1 (23 HSPs)
chr1 (9-69)||(11900913-11900973)
chr1 (9-69)||(49166693-49166753)
chr1 (9-59)||(1609969-1610019)
chr1 (9-66)||(35489195-35489252)
chr1 (9-70)||(24419618-24419679)
chr1 (9-69)||(5368859-5368919)
chr1 (25-69)||(15497477-15497521)
chr1 (9-69)||(25395917-25395973)
chr1 (9-59)||(11016674-11016724)
chr1 (9-69)||(5346957-5347017)
chr1 (9-57)||(5700119-5700167)
chr1 (9-57)||(34890193-34890241)
chr1 (14-69)||(6156629-6156684)
chr1 (9-51)||(30800294-30800336)
chr1 (15-57)||(38636236-38636278)
chr1 (15-69)||(47911845-47911899)
chr1 (9-57)||(1610035-1610082)
chr1 (9-69)||(8174180-8174240)
chr1 (9-57)||(8900801-8900849)
chr1 (17-69)||(24419528-24419580)
chr1 (9-69)||(31032437-31032497)
chr1 (9-69)||(35489282-35489342)
chr1 (9-69)||(38636287-38636347)
[»] chr5 (18 HSPs)
chr5 (9-59)||(20269527-20269577)
chr5 (9-57)||(7065670-7065718)
chr5 (15-69)||(14751216-14751270)
chr5 (9-54)||(7065595-7065640)
chr5 (10-69)||(11089284-11089343)
chr5 (9-68)||(28499867-28499925)
chr5 (10-69)||(34445256-34445315)
chr5 (9-51)||(21032617-21032659)
chr5 (9-59)||(22398130-22398180)
chr5 (9-51)||(26221037-26221079)
chr5 (9-51)||(42364233-42364275)
chr5 (15-72)||(8850354-8850411)
chr5 (9-66)||(18550975-18551032)
chr5 (9-57)||(8567961-8568009)
chr5 (9-57)||(14509906-14509954)
chr5 (9-53)||(28351029-28351073)
chr5 (9-69)||(28499777-28499837)
chr5 (9-69)||(38394427-38394487)
[»] chr7 (11 HSPs)
chr7 (9-70)||(12810303-12810364)
chr7 (9-69)||(40992816-40992876)
chr7 (19-69)||(21393286-21393336)
chr7 (9-58)||(17801467-17801516)
chr7 (27-63)||(34465127-34465163)
chr7 (9-53)||(42926996-42927040)
chr7 (11-57)||(21955421-21955468)
chr7 (9-51)||(4132472-4132514)
chr7 (9-43)||(38646187-38646221)
chr7 (9-69)||(12810393-12810453)
chr7 (21-69)||(34670348-34670396)
[»] chr2 (11 HSPs)
chr2 (9-70)||(11564995-11565056)
chr2 (11-57)||(17621090-17621136)
chr2 (9-71)||(30429062-30429124)
chr2 (8-57)||(9895635-9895684)
chr2 (9-69)||(9733551-9733611)
chr2 (9-53)||(14725222-14725266)
chr2 (9-69)||(41517449-41517509)
chr2 (14-57)||(29765754-29765797)
chr2 (12-71)||(34138783-34138842)
chr2 (9-57)||(29168585-29168633)
chr2 (21-69)||(41517359-41517407)
[»] chr4 (16 HSPs)
chr4 (9-69)||(38562211-38562271)
chr4 (9-57)||(38562133-38562181)
chr4 (9-51)||(22720519-22720561)
chr4 (15-69)||(51313462-51313516)
chr4 (14-51)||(19936508-19936545)
chr4 (9-69)||(2198043-2198103)
chr4 (9-69)||(10065061-10065121)
chr4 (9-69)||(22720591-22720651)
chr4 (9-69)||(41622182-41622242)
chr4 (13-71)||(52535948-52536006)
chr4 (9-69)||(22923654-22923714)
chr4 (9-69)||(22928307-22928367)
chr4 (9-69)||(22984586-22984646)
chr4 (9-69)||(22998174-22998234)
chr4 (9-57)||(23673441-23673489)
chr4 (9-57)||(39993127-39993175)
[»] scaffold0514 (1 HSPs)
scaffold0514 (9-68)||(5816-5875)
[»] scaffold0003 (1 HSPs)
scaffold0003 (9-69)||(320756-320816)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 20694476 - 20694174
Alignment:
Q  7 aaattaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagtaaagcacatatgagatgaaaggttctctaccatcttta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||    
T  20694476 aaattaattattcaatgtatctaaaaagttgatttttgtttataaatgtaaccggagggagtaaagcacatatgagatgaaaggttctctaccatcttta 20694377  T
Q  107 ctttgaaccataacttttccaaacccttatagttaaccacattgttgtatgcaaattttaactttcttttaacttgctcattaagattaatgagacaatt 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20694376 ctttgaaccataacctttccaaacccttatagttaaccacattgttgtatgcaaattttaactttcttttaacttgctcattaagattaatgagacaatt 20694277  T
Q  207 aatgttgacactcatgtgattttgaccattggtcaccatcttcttcctcactttgatagtagccatctgtagaacttcatctgcgtcaaattcatcttca 306  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20694276 aatgttgacactcatgtgattttgaccattggtcaccatctttttcctcactttgatagtagccatctgtagaacttcatctgcgtcaaattcatcttca 20694177  T
Q  307 ttg 309  Q
    |||    
T  20694176 ttg 20694174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 1784174 - 1784234
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||  ||||||||||||||||| |||||| |||||||||||| |||||| ||||    
T  1784174 attaattattagatgtatctaaaaagttgttttttgcttataaatgtgaccagaggaagta 1784234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 6590868 - 6590925
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagaggga 66  Q
    ||||||||||||||||| |||||||||   |||||| |||||||||||| ||||||||    
T  6590868 attaattattcaatgtacctaaaaagtaattttttgcttataaatgtgaccagaggga 6590925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 9428116 - 9428063
Alignment:
Q  10 ttaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagag 63  Q
    ||||||||||||||||| |||||| ||  ||||| |||||||||||||||||||    
T  9428116 ttaattattcaatgtatttaaaaaattattttttatttataaatgtgatcagag 9428063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 1157059 - 1156999
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||||||||||||||| ||  ||||  |||||||||||||| || ||||||    
T  1157059 attaattattcaatgtatctaaaaagctgcattttacttataaatgtgatcggatggagta 1156999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 9503627 - 9503675
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||| ||||||||| ||||||||||||  |||||||||||||||||||    
T  9503627 attaaatattcaatgaatctaaaaagttattttttgtttataaatgtga 9503675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 40223308 - 40223367
Alignment:
Q  10 ttaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||| |||| |||||| |||||||  ||||| || ||||||    
T  40223308 ttaattattcaatgtatctaaaacgttgttttttgcttataaaaatgatcggatggagta 40223367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 4102002 - 4102048
Alignment:
Q  7 aaattaattattcaatgtatctaaaaagttgatttttgtttataaat 53  Q
    ||||| ||||||||||| ||||||||| ||| |||||||||||||||    
T  4102002 aaatttattattcaatgaatctaaaaaattgttttttgtttataaat 4102048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 10184643 - 10184700
Alignment:
Q  12 aattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||| ||||||||||| |||||||  |||||||| ||||| |||| ||||    
T  10184643 aattattcaatgaatctaaaaagtcgattttttcttataaatatgatcggaggaagta 10184700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 12354499 - 12354458
Alignment:
Q  16 attcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||||||  ||||||||||||||||||| ||||||||||||    
T  12354499 attcaatgagtctaaaaagttgatttttgcttataaatgtga 12354458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 1784144 - 1784096
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||| ||||||||||||||||||| |   |||||||||||||||||||    
T  1784144 attaaatattcaatgtatctaaaaaatcattttttgtttataaatgtga 1784096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 9503536 - 9503584
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||| ||||||||| ||| ||||||||| |||||| ||||||||||||    
T  9503536 attaaatattcaatgaatcgaaaaagttgttttttgcttataaatgtga 9503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 11322647 - 11322706
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||| |||||||||| |||| ||||| ||||||  |||||| |||||||||    
T  11322647 attaattattcaatatatctaaaaa-ttgagttttgcttataatagtgatcggagggagta 11322706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 12328787 - 12328831
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaat 53  Q
    |||| |||||||||| || ||||||||| ||||||||||||||||    
T  12328787 attagttattcaatggatttaaaaagttaatttttgtttataaat 12328831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 14110167 - 14110211
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaat 53  Q
    ||||||| |||||||||||||||||||   |||||||||||||||    
T  14110167 attaattcttcaatgtatctaaaaagtcattttttgtttataaat 14110211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 5069995 - 5069935
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  5069995 attaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatcagagggagta 5069935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 29400717 - 29400660
Alignment:
Q  14 ttattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagtaaa 71  Q
    ||||||||||||  |||||||||| ||||||||||||||| ||||  |||||||||||    
T  29400717 ttattcaatgtacttaaaaagttgttttttgtttataaatatgattggagggagtaaa 29400660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 862907 - 862966
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||||||||||||||  || |||||| |||||||||||| | |||||||||    
T  862907 attaattattcaatgtatctaaaaa-atgttttttgcttataaatgtgaccggagggagta 862966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 24252966 - 24253026
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||| ||||||||||  |||||| |||||||| ||| |||||| ||||    
T  24252966 attaattattcaatgtacctaaaaagttattttttgcttataaatatgaccagaggaagta 24253026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 69
Target Start/End: Original strand, 16121055 - 16121110
Alignment:
Q  14 ttattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||| |||| |||||||||||||||||||| ||||||  |||||| |||||||||    
T  16121055 ttatttaatgaatctaaaaagttgatttttgcttataatagtgatcggagggagta 16121110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 7055649 - 7055703
Alignment:
Q  15 tattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||| | |||||||||  ||||||| |||||||||||||| |||||||||    
T  7055649 tattcaatgaacctaaaaagtacatttttgcttataaatgtgatcggagggagta 7055703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 7632855 - 7632897
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataa 51  Q
    |||||||||||| ||||||||||||||| | ||||||||||||    
T  7632855 attaattattcagtgtatctaaaaagttaagttttgtttataa 7632897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 26388246 - 26388204
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataa 51  Q
    |||||||||||||| |||||||||||| || ||||||||||||    
T  26388246 attaattattcaatatatctaaaaagtagagttttgtttataa 26388204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 3633706 - 3633755
Alignment:
Q  20 aatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||| |||||||||||   ||||||||||||||||||||| |||||||||    
T  3633706 aatgaatctaaaaagtgattttttgtttataaatgtgatcggagggagta 3633755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 10355933 - 10355900
Alignment:
Q  24 tatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||||||||||||||||||| ||||||||||||    
T  10355933 tatctaaaaagttgatttttgcttataaatgtga 10355900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 22397902 - 22397947
Alignment:
Q  14 ttattcaatgtatctaaaaagttgatttttgtttataaatgtgatc 59  Q
    |||||||||| |||| ||| |||||||||||||| |||||||||||    
T  22397902 ttattcaatgaatcttaaaggttgatttttgtttttaaatgtgatc 22397947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 674135 - 674183
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    |||| |||||||||| ||||||||| ||| |||||| ||||||||||||    
T  674135 attagttattcaatgaatctaaaaaattgttttttgcttataaatgtga 674183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 14589632 - 14589688
Alignment:
Q  13 attattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||||||||||||  | |||| |||||||  ||||| ||||||||||    
T  14589632 attattcaatgtatctaaaaagtaaagttttatttataatagtgatgagagggagta 14589688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 14623286 - 14623346
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||| |||||||||||||||||||  | |||| |||||||  ||||| ||||||||||    
T  14623286 attaatttttcaatgtatctaaaaagtgaagttttatttataatagtgatgagagggagta 14623346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 17773551 - 17773515
Alignment:
Q  14 ttattcaatgtatctaaaaagttgatttttgtttata 50  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  17773551 ttattgaatgtatctaaaaagtggatttttgtttata 17773515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 1779578 - 1779638
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||    
T  1779578 attaattattcaatgtatctaaaaagttggtttttgtttatatatgtgatcggagggagta 1779638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 16867673 - 16867613
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||| |||||||||||| ||||||||||| |||||| |||||||||||| |||||||||||    
T  16867673 attagttattcaatgtacctaaaaagttgttttttgcttataaatgtgaccagagggagta 16867613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 18093833 - 18093785
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    |||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  18093833 attaattattcaatgtatttaaaaatttgttttttgtttataaatgtga 18093785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 1779546 - 1779489
Alignment:
Q  12 aattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||| ||||||||||   |||||||||||||||||| | |||||||||    
T  1779546 aattattcaatgtacctaaaaagttatgttttgtttataaatgtgaccggagggagta 1779489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 36344521 - 36344581
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||||||||||||||||  | ||||||||||||   ||||| |||||||||    
T  36344521 attaattattcaatgtatctaaaaagtataattttgtttataatattgatcggagggagta 36344581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 26602017 - 26601958
Alignment:
Q  10 ttaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||| | ||||||||||| |||||| |||||||||| |  ||||||||||    
T  26602017 ttaattattcaatgaacctaaaaagttgttttttgcttataaatgtaactagagggagta 26601958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 27786547 - 27786601
Alignment:
Q  15 tattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||| | |||||||||||  ||||| |||||||||||||| |||||||||    
T  27786547 tattcaatgaacctaaaaagttgtgttttgcttataaatgtgatcggagggagta 27786601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 16867706 - 16867763
Alignment:
Q  12 aattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||  ||||| ||||||||||| |||||| ||||||||||||||  ||||||||    
T  16867706 aattattggatgtacctaaaaagttgttttttgcttataaatgtgatcgaagggagta 16867763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 26331309 - 26331362
Alignment:
Q  17 ttcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagtaa 70  Q
    ||||||| | ||||||||||| |||||| |||||||||||| | ||||||||||    
T  26331309 ttcaatgaacctaaaaagttgttttttgcttataaatgtgaccggagggagtaa 26331362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 36151309 - 36151266
Alignment:
Q  25 atctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||    
T  36151309 atctaaaaagtt-atttttgttaataaatgtgataagagggagta 36151266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 55121229 - 55121181
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    |||| |||||||||| | ||||||| ||| |||||||||||||||||||    
T  55121229 attagttattcaatgaacctaaaaaattgttttttgtttataaatgtga 55121181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 11900913 - 11900973
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||    
T  11900913 attaattattcaatgtatctaaaaagttggtttttgtttataaatatgatcatatggagta 11900973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 49166693 - 49166753
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||| |||||||||||    
T  49166693 attaattattcaatgtaactaaaaagttgttttttgcttataaatgtgaccagagggagta 49166753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 1610019 - 1609969
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatc 59  Q
    ||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  1610019 attaattattcaatgtatctaaaaagttgttttttgcttataaatgtgatc 1609969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 35489252 - 35489195
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagaggga 66  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||||    
T  35489252 attaattattcaatgtatctaaaaagttgttttttgattataaatgtgaccggaggga 35489195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 24419618 - 24419679
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagtaa 70  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||| | || |||||||    
T  24419618 attaattattcaatgtacctaaaaagttgttttttgcttataaatgtgaccggaaggagtaa 24419679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 5368859 - 5368919
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||| ||| | |||||||||    
T  5368859 attaattattcaatgcatctaaaaagttaatttttgcttataaatatgaccggagggagta 5368919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 15497521 - 15497477
Alignment:
Q  25 atctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||    
T  15497521 atctaaaaagttgatttttgtttataaatgtgatcggagagagta 15497477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 25395973 - 25395917
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||||    |||||| ||||||||||||||||| ||||||    
T  25395973 attaattattcaatgtatctaaaaag----tttttgcttataaatgtgatcagatggagta 25395917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 11016674 - 11016724
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatc 59  Q
    |||| |||||||||  | |||||||||||||||||||||||||||||||||    
T  11016674 attagttattcaataaacctaaaaagttgatttttgtttataaatgtgatc 11016724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 5347017 - 5346957
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||||    |||||| |||||||||||| |||||| ||||    
T  5347017 attaattattcaatgtatctaaaaagacattttttgcttataaatgtgaccagaggaagta 5346957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 5700119 - 5700167
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    |||||||||||||||||  |||||||||| |||||| ||||||||||||    
T  5700119 attaattattcaatgtacttaaaaagttgttttttgcttataaatgtga 5700167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 34890241 - 34890193
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    |||| |||||||||||||||||||||||| |||||| ||||| ||||||    
T  34890241 attagttattcaatgtatctaaaaagttgttttttgcttatatatgtga 34890193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 6156684 - 6156629
Alignment:
Q  14 ttattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||| |||| |||||||||||||||||||||||||||  |||||| || ||||||    
T  6156684 ttattgaatgaatctaaaaagttgatttttgtttataatagtgatcggaaggagta 6156629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 30800294 - 30800336
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataa 51  Q
    |||||||||||||| |||||||||||| || ||||||||||||    
T  30800294 attaattattcaatatatctaaaaagtagagttttgtttataa 30800336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 38636278 - 38636236
Alignment:
Q  15 tattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||    
T  38636278 tattcaatgaatctaaaaagttgttttttgcttataaatgtga 38636236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 47911899 - 47911845
Alignment:
Q  15 tattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||| | |||||||||  |||||||||||||||||||| | |||||||||    
T  47911899 tattcaatgaacctaaaaagtgcatttttgtttataaatgtgaccggagggagta 47911845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 1610035 - 1610082
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||||||||||||||||| ||||||||| |||||  ||||||||||||    
T  1610035 attaattattcaatgtatcgaaaaagttg-tttttacttataaatgtga 1610082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 8174180 - 8174240
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||| |||||||| || ||||||||||  ||||| |||||||||||| | |||||||||    
T  8174180 attaatcattcaatgaatataaaaagttgtgttttgcttataaatgtgaccggagggagta 8174240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 8900849 - 8900801
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||||||||||||||| ||||||||||| || ||  ||||||||||||    
T  8900849 attaattattcaatgtacctaaaaagttgtttattacttataaatgtga 8900801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 24419580 - 24419528
Alignment:
Q  17 ttcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||| ||||||||||||  |||||| |||||||||||| | |||||||||    
T  24419580 ttcaatgaatctaaaaagttcttttttgcttataaatgtgaccggagggagta 24419528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 31032497 - 31032437
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||  ||| ||||||||||||| |||||| |||| ||||||| | |||||||||    
T  31032497 attaattatttcatgaatctaaaaagttgttttttgcttattaatgtgaccggagggagta 31032437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 35489282 - 35489342
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||||||  ||||||||   |||||| |||||||||||| | |||||||||    
T  35489282 attaattattcaatgtacataaaaagtcattttttgcttataaatgtgaccggagggagta 35489342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 38636287 - 38636347
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||| |||||||||  ||||||||||||| |||||| || ||||||||| | |||||||||    
T  38636287 attagttattcaatcaatctaaaaagttgttttttgcttttaaatgtgaccggagggagta 38636347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 20269527 - 20269577
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatc 59  Q
    ||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  20269527 attaattattcaatgtatctaaaaaattgttttttgtttataaatgtgatc 20269577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 7065670 - 7065718
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||||||||||||| || ||||||||||||||||| ||||||||||||    
T  7065670 attaattattcaatgaatttaaaaagttgatttttgcttataaatgtga 7065718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 14751216 - 14751270
Alignment:
Q  15 tattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||| ||||||||||| |||||| |||||||||||| | |||||||||    
T  14751216 tattcaatgtacctaaaaagttgttttttgcttataaatgtgaccggagggagta 14751270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 7065640 - 7065595
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatg 54  Q
    |||| |||||||||||||||||||||||  ||||||||||||||||    
T  7065640 attagttattcaatgtatctaaaaagttcttttttgtttataaatg 7065595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 11089343 - 11089284
Alignment:
Q  10 ttaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||||||||||||| ||  |||||| |||||||| ||| | |||||||||    
T  11089343 ttaattattcaatgtatctaaaaaattattttttgattataaatatgaccggagggagta 11089284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 28499867 - 28499925
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagt 68  Q
    |||||||||||||| ||||||||||||| ||||||  |||||||||||||| || |||||    
T  28499867 attaattattcaatatatctaaaaagtt-attttttcttataaatgtgatcggatggagt 28499925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 34445315 - 34445256
Alignment:
Q  10 ttaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||| ||| | ||||||||||| |||||| ||||||| |||| |||||||||||    
T  34445315 ttaattattccatgaacctaaaaagttgttttttgcttataaaagtgaccagagggagta 34445256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 21032617 - 21032659
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataa 51  Q
    |||||||||||||| |||||||||||| || ||||||||||||    
T  21032617 attaattattcaatatatctaaaaagtagaattttgtttataa 21032659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 59
Target Start/End: Original strand, 22398130 - 22398180
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatc 59  Q
    ||||||||||||||| |||||||||||||  |||| ||||||||| |||||    
T  22398130 attaattattcaatgaatctaaaaagttgtattttatttataaatatgatc 22398180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 26221079 - 26221037
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataa 51  Q
    |||||||||||||||||||||||||||  | ||||||||||||    
T  26221079 attaattattcaatgtatctaaaaagtaaagttttgtttataa 26221037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 42364275 - 42364233
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataa 51  Q
    |||||||||||||||||| ||||||||  ||||||||||||||    
T  42364275 attaattattcaatgtatttaaaaagtaaatttttgtttataa 42364233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 8850354 - 8850411
Alignment:
Q  15 tattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagtaaag 72  Q
    ||||||||| | |||||||||  ||||||  |||||||||||||| ||||||||||||    
T  8850354 tattcaatgaacctaaaaagtacatttttacttataaatgtgatcggagggagtaaag 8850411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 18551032 - 18550975
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagaggga 66  Q
    |||| |||||||||| ||||||| |||||  ||||| |||||||||||| ||||||||    
T  18551032 attagttattcaatgaatctaaacagttgtgttttgcttataaatgtgaccagaggga 18550975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 8567961 - 8568009
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    |||||||||||||||||| |||||| |   |||||||||||||||||||    
T  8567961 attaattattcaatgtatttaaaaaatcattttttgtttataaatgtga 8568009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 14509906 - 14509954
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    |||||||||||||| |||||||||| ||  ||||| |||||||||||||    
T  14509906 attaattattcaatatatctaaaaaattattttttatttataaatgtga 14509954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 28351029 - 28351073
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaat 53  Q
    |||| |||||||||| ||||||||||||| |||||| ||||||||    
T  28351029 attagttattcaatgaatctaaaaagttgttttttgcttataaat 28351073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 28499837 - 28499777
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||| |||||||||| ||||||||| ||  |||||| |||||||||||| | |||||||||    
T  28499837 attagttattcaatgaatctaaaaaattattttttgcttataaatgtgaccggagggagta 28499777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 38394487 - 38394427
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||| |||||||||||  ||||||  ||||||||  |||| |||||||||    
T  38394487 attaattattcaatgaatctaaaaagtcaattttttcttataaataggatcggagggagta 38394427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 12810364 - 12810303
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagtaa 70  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||||||  ||||||||||    
T  12810364 attaattattcaatgtatctaaaacgttggtttttggttataaatgtgattggagggagtaa 12810303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 40992816 - 40992876
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||||||| |||||||||| |||||| || ||| ||||||| |||||||||    
T  40992816 attaattattcaatgtatttaaaaagttgttttttgcttgtaattgtgatcggagggagta 40992876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 21393336 - 21393286
Alignment:
Q  19 caatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||| |||||||||||| ||||||||||||| ||||||||| ||||||||    
T  21393336 caatgaatctaaaaagttaatttttgtttatatatgtgatcaaagggagta 21393286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 17801467 - 17801516
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgat 58  Q
    ||||||||||||||| ||||||||||||| |||||| |||||||| ||||    
T  17801467 attaattattcaatgaatctaaaaagttgttttttgattataaatatgat 17801516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 34465163 - 34465127
Alignment:
Q  27 ctaaaaagttgatttttgtttataaatgtgatcagag 63  Q
    ||||||||||||||||||||||||||||||| |||||    
T  34465163 ctaaaaagttgatttttgtttataaatgtgaccagag 34465127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 42927040 - 42926996
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaat 53  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||    
T  42927040 attagttattcaatgaatctaagaagttgatttttgtttataaat 42926996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 21955421 - 21955468
Alignment:
Q  11 taattattcaatgtatctaaaaagttg-atttttgtttataaatgtga 57  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||    
T  21955421 taattattcaatgtatctaaaaagttgtttttttatttataaatgtga 21955468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 51
Target Start/End: Original strand, 4132472 - 4132514
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataa 51  Q
    ||||| |||||||||||||||||||||| | ||||||||||||    
T  4132472 attaaatattcaatgtatctaaaaagttaagttttgtttataa 4132514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 38646221 - 38646187
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgattttt 43  Q
    |||||||||||||||||||||||||||||| ||||    
T  38646221 attaattattcaatgtatctaaaaagttgagtttt 38646187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 12810393 - 12810453
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||| || |||||||||||  ||||| ||| |||||||||| ||| |||||    
T  12810393 attaattattcaatatacctaaaaagttgtgttttgcttacaaatgtgatcggagtgagta 12810453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 34670396 - 34670348
Alignment:
Q  21 atgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||| ||||||||||| |||||| |||||||||||| | |||||||||    
T  34670396 atgtacctaaaaagttgttttttgcttataaatgtgaccggagggagta 34670348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 9 - 70
Target Start/End: Complemental strand, 11565056 - 11564995
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagtaa 70  Q
    |||||||||||||||||||||||| |||| |||||| |||||||||||| | ||||||||||    
T  11565056 attaattattcaatgtatctaaaatgttgttttttgcttataaatgtgaccggagggagtaa 11564995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 17621136 - 17621090
Alignment:
Q  11 taattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||||||||||| || |||||||||| |||||||||||||||||||    
T  17621136 taattattcaatgaatttaaaaagttgttttttgtttataaatgtga 17621090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 30429124 - 30429062
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagtaaa 71  Q
    |||||||||| |||| | ||||||||||| |||||| |||||||||||| | |||||||||||    
T  30429124 attaattattgaatgaacctaaaaagttgttttttgcttataaatgtgaccggagggagtaaa 30429062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 9895635 - 9895684
Alignment:
Q  8 aattaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||||||||| |||||||||||||||||| | |||| ||||||||||||    
T  9895635 aattaattatttaatgtatctaaaaagttgttgtttgcttataaatgtga 9895684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 9733551 - 9733611
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||| |||||||||| | ||||||| ||| ||||||||||||||||||| | |||||||||    
T  9733551 attagttattcaatgaacctaaaaaattgttttttgtttataaatgtgaccggagggagta 9733611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 14725266 - 14725222
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaat 53  Q
    ||||||||||  ||||||||||||||||| |||||||||||||||    
T  14725266 attaattattagatgtatctaaaaagttgttttttgtttataaat 14725222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 41517449 - 41517509
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||||||||||||||  |||||||||  |||||| |||||||||||| | |||||||||    
T  41517449 attaattattcaatgtacttaaaaagttattttttgcttataaatgtgaccggagggagta 41517509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 29765754 - 29765797
Alignment:
Q  14 ttattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    |||||||||| |||||||||||||||||||| |||||| |||||    
T  29765754 ttattcaatgaatctaaaaagttgatttttggttataattgtga 29765797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 34138783 - 34138842
Alignment:
Q  12 aattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagtaaa 71  Q
    |||||||||||  | ||||||| ||| ||||||||||||||||||||| |||| ||||||    
T  34138783 aattattcaataaacctaaaaaattgttttttgtttataaatgtgatcggaggaagtaaa 34138842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 29168585 - 29168633
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    |||||||||| ||||||| |||||||||  |||||| ||||||||||||    
T  29168585 attaattatttaatgtatttaaaaagttattttttgcttataaatgtga 29168633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 41517407 - 41517359
Alignment:
Q  21 atgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||| ||||||||||| |||||| |||||||||||| | |||||||||    
T  41517407 atgtacctaaaaagttggtttttgcttataaatgtgaccggagggagta 41517359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 38562211 - 38562271
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||| ||| |||||| |||||||||||| | |||||||||    
T  38562211 attaattattcaatgtatctaaaaaattgttttttgcttataaatgtgaccggagggagta 38562271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 38562181 - 38562133
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    |||||||||||||||||||||| |||||| |||||| ||||||||||||    
T  38562181 attaattattcaatgtatctaacaagttgttttttgcttataaatgtga 38562133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 22720561 - 22720519
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataa 51  Q
    ||||||||||||||||||||||||||| || ||||||||||||    
T  22720561 attaattattcaatgtatctaaaaagtggaattttgtttataa 22720519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 51313516 - 51313462
Alignment:
Q  15 tattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||| | |||||||||  |||||||||||||||||||||| |||||||||    
T  51313516 tattcaatgaagctaaaaagtacatttttgtttataaatgtgatcggagggagta 51313462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 19936545 - 19936508
Alignment:
Q  14 ttattcaatgtatctaaaaagttgatttttgtttataa 51  Q
    |||||||||| |||||||||||||||||||||||||||    
T  19936545 ttattcaatgaatctaaaaagttgatttttgtttataa 19936508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 2198103 - 2198043
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||||| || ||||| ||||||  |||| | |||||||||    
T  2198103 attaattattcaatgtatctaaaaagtggagttttgcttataatagtgaccggagggagta 2198043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 10065121 - 10065061
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||  ||||| ||||||||||| |||||| |||||||||||| | |||||||||    
T  10065121 attaattattggatgtacctaaaaagttgttttttgcttataaatgtgaccggagggagta 10065061  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 22720591 - 22720651
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||||| || ||||| ||||||  |||| | |||||||||    
T  22720591 attaattattcaatgtatctaaaaagtggagttttgcttataatagtgaccggagggagta 22720651  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 41622182 - 41622242
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||||| ||||||||||||||||||||  | |||| ||||||| ||||||| |||||||||    
T  41622182 attaatcattcaatgtatctaaaaagtgaacttttatttataactgtgatcggagggagta 41622242  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 71
Target Start/End: Complemental strand, 52536006 - 52535948
Alignment:
Q  13 attattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagtaaa 71  Q
    |||||||||||||||||||||||| | ||||  ||||||||  |||| |||||||||||    
T  52536006 attattcaatgtatctaaaaagttaactttttcttataaataagatcggagggagtaaa 52535948  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 22923714 - 22923654
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||| | || ||||| ||||||  |||| | |||||||||    
T  22923714 attaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggagggagta 22923654  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 22928367 - 22928307
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||| | || ||||| ||||||  |||| | |||||||||    
T  22928367 attaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggagggagta 22928307  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 22984646 - 22984586
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||| | || ||||| ||||||  |||| | |||||||||    
T  22984646 attaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggagggagta 22984586  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 22998234 - 22998174
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    ||||||||||||||||||||||||| | || ||||| ||||||  |||| | |||||||||    
T  22998234 attaattattcaatgtatctaaaaattggagttttgcttataatagtgaccggagggagta 22998174  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 23673441 - 23673489
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    |||||||||||||| || ||||||||||  |||||| ||||||||||||    
T  23673441 attaattattcaatatacctaaaaagttattttttgcttataaatgtga 23673489  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 39993127 - 39993175
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtga 57  Q
    ||||||||||||||| ||||||||||||  |||||  ||||||||||||    
T  39993127 attaattattcaatgaatctaaaaagttattttttacttataaatgtga 39993175  T

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Target: scaffold0514 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 5875 - 5816
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagt 68  Q
    |||| |||||||||||| |||||||||   |||||| |||||||||||||| ||||||||    
T  5875 attagttattcaatgtacctaaaaagtcattttttgcttataaatgtgatccgagggagt 5816  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 320756 - 320816
Alignment:
Q  9 attaattattcaatgtatctaaaaagttgatttttgtttataaatgtgatcagagggagta 69  Q
    |||| ||||| |||| |||||||||||||  ||||| |||||||||||||  |||||||||    
T  320756 attagttatttaatgaatctaaaaagttgtgttttgcttataaatgtgattggagggagta 320816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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