View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11812_low_6 (Length: 296)
Name: NF11812_low_6
Description: NF11812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11812_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 31127104 - 31127381
Alignment:
| Q |
1 |
gttaaatgcagcgattccatttctatggaaagtcaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127104 |
gttaaatgcagcgattccatttctatggaaagtgaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactc |
31127203 |
T |
|
| Q |
101 |
agccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127204 |
-gccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattca |
31127302 |
T |
|
| Q |
201 |
gatgaatcttttgttgttgatattgtaataagctttattcttgctgggagagatacaacttcagctgcactcacttggt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31127303 |
gatgaatcttttgttgttgatattgtaataagctttattcttgctgggagagatacaacttcagctgcactcacttggt |
31127381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 31077796 - 31078063
Alignment:
| Q |
11 |
gcgattccatttctatggaaagtcaagaaaatattaaatgttgg-atcagagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaag |
109 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| | || ||| |||||||| || |||||||| | ||||||||||||||||| || ||||| |
|
|
| T |
31077796 |
gcgattccattgatatggaaagtgaagaaaatattaaacatagggatc-gagcgacgattgaaagaagccgtcgctgaagtaagaggactt-gctacaag |
31077893 |
T |
|
| Q |
110 |
aatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatct |
209 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| || | ||||||||| | ||| || |||| || ||||||||||| |||||||| |||||||| |
|
|
| T |
31077894 |
aatcgttagggaaaagaaaaaagagcttaaagaaaaagcaactttggaatcagttgatcttttatcgcggtttttaagttcgggtcattcggatgaatca |
31077993 |
T |
|
| Q |
210 |
tttgttgttgatattgtaataagctttattcttgctgggagagatacaacttcagctgcactcacttggt |
279 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
31077994 |
tttgtagttgatattgtaataagctttattcttgctgggaaagatacaacttcagctgcactcacgtggt |
31078063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 31131826 - 31132089
Alignment:
| Q |
15 |
ttccatttctatggaaagtcaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactcagccacaagaatcg |
114 |
Q |
| |
|
|||||||| |||||||||| || ||| | |||| ||||| | ||||||||||| |||||||||| ||||||||||| || ||| ||||||| ||| | |
|
|
| T |
31131826 |
ttccatttttatggaaagtgaaaaaattcctaaacattggacccgagcgacggttgaaagaagctgtcgctgaagtaagggggctc-gccacaaaaattg |
31131924 |
T |
|
| Q |
115 |
ttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattcagatgaatcttttgt |
214 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| | | |||||||| |||||||| | || |||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
31131925 |
ttagggaaaagaaaaaagagcttaaagaaaaggaaaccttggaatcggtggatattttgtcgcgatttttaagttctggtcattcggacgaatcttttgt |
31132024 |
T |
|
| Q |
215 |
tgttgatattgtaataagctttattcttgctgggagagatacaacttcagctgcactcacttggt |
279 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31132025 |
agttgatattgtgataagctttattcttgctgggagagatacaacttcagctgcactcacgtggt |
31132089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 31128784 - 31129011
Alignment:
| Q |
1 |
gttaaatgcagcgattccatttctatggaaagtcaagaaaatattaaatgttggatcagagcgacggttaaaagaagctgctgctgaagtaagaggactc |
100 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||||||||||||||||||||||| || |||| |||||||||| | | |||||||||||||||| |
|
|
| T |
31128784 |
gttaaatgatgccattccatttctatggaaagtgaagaaaatattaaatgttggatccaagaaacggctaaaagaagccgtcgttgaagtaagaggactc |
31128883 |
T |
|
| Q |
101 |
agccacaagaatcgttagggaaaagaaaaaggagcttgaagaaaaatcatcgttggaatcattggatattctatcacgatttttaagttcaggtcattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||| |||||||||| |||||||||||||| ||||||| ||||| || |||| | |||||| |
|
|
| T |
31128884 |
-gccacaagaatcgttagggaaaagaaaaaagagtttgtagaaaaatcagtgttggaatcattggttattctaccacgacgcttgagttacgcacattca |
31128982 |
T |
|
| Q |
201 |
gatgaatcttttgttgttgatattgtaat |
229 |
Q |
| |
|
|| |||||||||| |||||||||||||| |
|
|
| T |
31128983 |
gaagaatcttttgcagttgatattgtaat |
31129011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University