View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11812_low_9 (Length: 255)
Name: NF11812_low_9
Description: NF11812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11812_low_9 |
 | |
|
| [»] chr6 (6 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr5 (17 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 12904912 - 12905150
Alignment:
| Q |
17 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
116 |
Q |
| |
|
||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12904912 |
accttcaatttaatgtggttttgtccaatcaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
12905011 |
T |
|
| Q |
117 |
taactagtgacccatacaatactcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttac |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12905012 |
taactagtgacccatacaatgctcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttac |
12905111 |
T |
|
| Q |
217 |
agagttgagcctaaaaagatatcagttacatggatcttt |
255 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12905112 |
agagttgagcctagaaagatatcagttacatggatcttt |
12905150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 12897291 - 12897529
Alignment:
| Q |
17 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12897291 |
accttaaatttaatgtggtttggtccaaacaaaattagggcattggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
12897390 |
T |
|
| Q |
117 |
taactagtgacccatacaatactcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttac |
216 |
Q |
| |
|
| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12897391 |
tttccagtgacccatacaatgctcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttac |
12897490 |
T |
|
| Q |
217 |
agagttgagcctaaaaagatatcagttacatggatcttt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12897491 |
agagttgagcctaaaaagatatcagttacatggatcttt |
12897529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 12930002 - 12930240
Alignment:
| Q |
17 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12930002 |
accttaaatttaatgtggttttgtccaaacaaaattagggcagtggctgcaataggaaagcaaactgatcatctggcattgctcaaattcaaagaatcaa |
12930101 |
T |
|
| Q |
117 |
taactagtgacccatacaatactcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttac |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
12930102 |
taactagtgacccatacaatactcttgaatcttggaattcttccatccacttctgcaagtggcatggaatcacatgtagccccatgcatgaacgagttac |
12930201 |
T |
|
| Q |
217 |
agagttgagcctaaaaagatatcagttacatggatcttt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12930202 |
agagttgagcctaaaaagatatcagttacatggatcttt |
12930240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 12955804 - 12956042
Alignment:
| Q |
17 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12955804 |
accttaaatttaatgtggtttggtccaaacaaaattaaggcaatgactgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
12955903 |
T |
|
| Q |
117 |
taactagtgacccatacaatactcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttac |
216 |
Q |
| |
|
| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
12955904 |
tttcaagtgacccatacaatgctcttgaatcttggaattcttccatccatttctgcaagtggcaaggaatcacatgcagccccatgcatgaacgagttac |
12956003 |
T |
|
| Q |
217 |
agagttgagcctaaaaagatatcagttacatggatcttt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12956004 |
agagttgagcctaaaaagatatcagttacatggatcttt |
12956042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 12946367 - 12946605
Alignment:
| Q |
17 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12946367 |
accttaaatttaatgtggtttggtccaaacaaaataagggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
12946466 |
T |
|
| Q |
117 |
taactagtgacccatacaatactcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttac |
216 |
Q |
| |
|
| | |||||||||||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12946467 |
tttccagtgacccatacaaagctcttgaatcttggaattcatccattcacttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttac |
12946566 |
T |
|
| Q |
217 |
agagttgagcctaaaaagatatcagttacatggatcttt |
255 |
Q |
| |
|
| |||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
12946567 |
acagttgactctagaaagatatcagttacatggatcttt |
12946605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 12955526 - 12955678
Alignment:
| Q |
17 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12955526 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtgactgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
12955625 |
T |
|
| Q |
117 |
taactagtgacccatacaatactcttgaatcttggaattcttccatccatttc |
169 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12955626 |
tttctagtgacccatacaatgctcttgaatcttggaattcttccatccatttc |
12955678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 17925889 - 17925651
Alignment:
| Q |
17 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17925889 |
accttcaatttaatgtggtttggtccaaacaaaattagggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
17925790 |
T |
|
| Q |
117 |
taactagtgacccatacaatactcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttac |
216 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
17925789 |
tttctagtgacccatacaaagctcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttac |
17925690 |
T |
|
| Q |
217 |
agagttgagcctaaaaagatatcagttacatggatcttt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17925689 |
agagttgagcctaaaaagatatcagttacatggatcttt |
17925651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 17)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 10719371 - 10719143
Alignment:
| Q |
27 |
taatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaataactagtga |
126 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||||| |||||| ||||| |
|
|
| T |
10719371 |
taatgtggtttggcacaaacaaaattgtggcagtggctgcattaggtaaccaaacagatcatttagcattgctcaaattcaaagaatgaataaccagtga |
10719272 |
T |
|
| Q |
127 |
cccatacaatactcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttacagagttgagc |
226 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| | |
|
|
| T |
10719271 |
tccatatgaagctcttgaatcttggaattcttccatccacttctgcaagtggcatggaatcacatgcagccccatgcatgaaagagttacagagttgaac |
10719172 |
T |
|
| Q |
227 |
ctaaaaagatatcagttacatggatcttt |
255 |
Q |
| |
|
||| | |||||| ||||||||||||||| |
|
|
| T |
10719171 |
ctaggaggatatctgttacatggatcttt |
10719143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 255
Target Start/End: Original strand, 10562753 - 10562991
Alignment:
| Q |
17 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
10562753 |
accttaaatttaatgtggtttaccacaaacaaaatggtggcagtggctgcattaggaaaccaaacagatcatttagcattgctcaaattcaaagaatcaa |
10562852 |
T |
|
| Q |
117 |
taactagtgacccatacaatactcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttac |
216 |
Q |
| |
|
|| | ||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| ||||||||| || |||||| |
|
|
| T |
10562853 |
tatccagtgatccatacaatgctcttgaatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaaagagttat |
10562952 |
T |
|
| Q |
217 |
agagttgagcctaaaaagatatcagttacatggatcttt |
255 |
Q |
| |
|
|||||||| ||||| ||| |||| |||||||||||||| |
|
|
| T |
10562953 |
agagttgaacctaagaagtaatcacttacatggatcttt |
10562991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 10749498 - 10749260
Alignment:
| Q |
17 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
116 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
10749498 |
accttaaatttaatgtcgtttggcacaaacaaaaccgtggcagtggctgcattaggaaaccaaacagatcatttggcattgcacaaatttaaagaatcaa |
10749399 |
T |
|
| Q |
117 |
taactagtgacccatacaatactcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttac |
216 |
Q |
| |
|
|| | ||||||||| | || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
10749398 |
tatcgagtgacccaaataaagctcttgaatcttggaattcttccatccacttctgcaagtggcatggaatcacatgcaaacccatgcatgaaagagttac |
10749299 |
T |
|
| Q |
217 |
agagttgagcctaaaaagatatcagttacatggatcttt |
255 |
Q |
| |
|
| |||||| | || || ||||||| |||||||||||||| |
|
|
| T |
10749298 |
aaagttgaacttagaaggatatcatttacatggatcttt |
10749260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 26 - 255
Target Start/End: Complemental strand, 10765589 - 10765360
Alignment:
| Q |
26 |
ttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaataactagtg |
125 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| | ||||||||||| | ||||| |||||||||||||||||||||||||||||| | |||| |
|
|
| T |
10765589 |
ttaatgtggtttggcacaaacaaaatggtggcagtggctcaattaggaaaccaatcagatcaattggcattgctcaaattcaaagaatcaatatcaagtg |
10765490 |
T |
|
| Q |
126 |
acccatacaatactcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttacagagttgag |
225 |
Q |
| |
|
| ||||| || |||||||||||||||||||||||||||| || || ||||||||||||||||||||||| | ||||||| || | ||||||||||||| |
|
|
| T |
10765489 |
atccatataaagctcttgaatcttggaattcttccatccacttttgaaagtggcatggaatcacatgcagcctcatgcatcaaagggttacagagttgaa |
10765390 |
T |
|
| Q |
226 |
cctaaaaagatatcagttacatggatcttt |
255 |
Q |
| |
|
|||| | |||||||||||||||||||||| |
|
|
| T |
10765389 |
cctagcaggatatcagttacatggatcttt |
10765360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 223
Target Start/End: Complemental strand, 10743185 - 10742979
Alignment:
| Q |
17 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
116 |
Q |
| |
|
||||| ||||||||| |||||| |||||||||| |||||||||| | ||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
10743185 |
accttgaatttaatgcagtttggcacaaacaaaatggtggcagtggctcaattaggaaaccaatcagatcatttggcattgctcaaattcaaagaatcaa |
10743086 |
T |
|
| Q |
117 |
taactagtgacccatacaatactcttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttac |
216 |
Q |
| |
|
|| | ||||| ||||| || ||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| || |||||| |
|
|
| T |
10743085 |
tatcaagtgatccatataaagctcttgagtcttggaattcttccatccacttctgcaagtggtatggaatcacatgcaaccccatgcatcaaagagttat |
10742986 |
T |
|
| Q |
217 |
agagttg |
223 |
Q |
| |
|
||||||| |
|
|
| T |
10742985 |
agagttg |
10742979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 69 - 252
Target Start/End: Complemental strand, 11050303 - 11050120
Alignment:
| Q |
69 |
taggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaataactagtgacccatacaatactcttgaatcttggaattcttccatccattt |
168 |
Q |
| |
|
||||||||||||| |||||||| |||||| | |||||||||||| ||||| |||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
11050303 |
taggaaaccaaacagatcattttgcattgattaaattcaaagaaacaatataccgtgacccaaatggagctcttgaatcttggaattcttccatccattt |
11050204 |
T |
|
| Q |
169 |
ctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttacagagttgagcctaaaaagatatcagttacatggatc |
252 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||| || |||||||| |||||| |||| || |||||||||| |||||||| |
|
|
| T |
11050203 |
ctgcaagtggcatggaatcacatgcagcctcatgcatcaaagagttacaaagttgaacctagaaggatatcagttgcatggatc |
11050120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 10609439 - 10609671
Alignment:
| Q |
17 |
accttaaatttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaa |
116 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||| | ||||||||| | ||||||||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
10609439 |
accttaaatataatgtggtttggtacaaacaaaactgtggcagtggc---attaggaaaccaaactgattatttgtcattgcttaaattcaaagaatcaa |
10609535 |
T |
|
| Q |
117 |
taactagtgacccatacaat--actctt-gaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagt |
213 |
Q |
| |
|
|| | | ||| ||| ||| | |||| || |||||||||| |||||||||||| || ||||||| |||| |||||||||| | ||||| || |||| |
|
|
| T |
10609536 |
tatccaatgatcca---aatggagtcttagattcttggaatttttccatccatttatgtaagtggcgtggagtcacatgcagctctatgcaacaaagagt |
10609632 |
T |
|
| Q |
214 |
tacagagttgagcctaaaaagatatcagttacatggatc |
252 |
Q |
| |
|
|| |||||||| ||| || |||||||||| |||||||| |
|
|
| T |
10609633 |
tatagagttgaaccttgaaggatatcagttgcatggatc |
10609671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 217
Target Start/End: Complemental strand, 9838759 - 9838611
Alignment:
| Q |
69 |
taggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaataactagtgacccatacaat--actctt-gaatcttggaattcttccatcca |
165 |
Q |
| |
|
|||||||||||||||||||| | ||||||||| ||||||||||||||||| | ||||||||| ||| | |||| || |||||||||||||| ||||| |
|
|
| T |
9838759 |
taggaaaccaaactgatcatcttgcattgctccaattcaaagaatcaatatccagtgaccca---aatggagtcttagattcttggaattcttctatcca |
9838663 |
T |
|
| Q |
166 |
tttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttaca |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||| || |||||||| |
|
|
| T |
9838662 |
cttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttaca |
9838611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 69 - 194
Target Start/End: Original strand, 10548581 - 10548706
Alignment:
| Q |
69 |
taggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaataactagtgacccatacaatactcttgaatcttggaattcttccatccattt |
168 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||||| ||||| ||||| ||||||||| | | | ||||| ||||||||| ||| |||||||| |
|
|
| T |
10548581 |
taggaaaccaaactgatcatctatcattgcttaaattcaaggaatctataaccagtgacccacatagaatgcttgattcttggaatggttctatccattt |
10548680 |
T |
|
| Q |
169 |
ctgcaagtggcatggaatcacatgca |
194 |
Q |
| |
|
||||| |||||||||||||| |||| |
|
|
| T |
10548681 |
ttgcaactggcatggaatcacgtgca |
10548706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 132
Target Start/End: Complemental strand, 10590898 - 10590795
Alignment:
| Q |
26 |
ttaatgtggtttggtccaaacaaaattacggcagtggctgcaataggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaataactagtg |
125 |
Q |
| |
|
|||||||||||||| ||||||| || | ||||||||| | ||||||||||||| |||||||||||||||||| ||||||| ||| |||| |||||| |
|
|
| T |
10590898 |
ttaatgtggtttggcccaaacagaactgtggcagtggc---actaggaaaccaaaccgatcatttggcattgctccaattcaagcaattaatatctagtg |
10590802 |
T |
|
| Q |
126 |
acccata |
132 |
Q |
| |
|
||||||| |
|
|
| T |
10590801 |
acccata |
10590795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 225
Target Start/End: Original strand, 10598867 - 10599023
Alignment:
| Q |
69 |
taggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaataactagtgacccatacaatactctt-gaatcttggaattcttccatccatt |
167 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||| ||| | || ||||||||||||| || |||| || ||||||||| ||| | || | |
|
|
| T |
10598867 |
taggaaaccaaactgatcatttggctttgctccaattcaaccaattagtatctagtgacccatatggta-tcttagattcttggaatagttcaactcact |
10598965 |
T |
|
| Q |
168 |
tctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttacagagttgag |
225 |
Q |
| |
|
| ||||| ||||||||||||| ||||| |||| |||| || |||||||| ||||||| |
|
|
| T |
10598966 |
tttgcaattggcatggaatcatatgcaatcccaagcatcaaagagttacaaagttgag |
10599023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 205
Target Start/End: Original strand, 10578786 - 10578921
Alignment:
| Q |
70 |
aggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaataactagtgacccatacaatactcttgaatcttggaattcttccatccatttc |
169 |
Q |
| |
|
|||||||||||| |||||||| || |||||| ||||||| |||||||| ||||||| ||||| || ||| || ||||||||| |||| | ||| || |
|
|
| T |
10578786 |
aggaaaccaaaccgatcatttcgctttgctccaattcaagcaatcaatatctagtgatccatatggtattctagattcttggaatgcttcaacccacttt |
10578885 |
T |
|
| Q |
170 |
tgcaagtggcatggaatcacatgcaggcccatgcat |
205 |
Q |
| |
|
||||| |||| ||||||| |||||| |||| |||| |
|
|
| T |
10578886 |
tgcaaatggcctggaatcgtatgcagtcccaagcat |
10578921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 252
Target Start/End: Complemental strand, 19608195 - 19608113
Alignment:
| Q |
170 |
tgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttacagagttgagcctaaaaagatatcagttacatggatc |
252 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||| || |||||| ||| |||| |||| || ||||| | || |||||||| |
|
|
| T |
19608195 |
tgcaattggcatggaatcacatgcagccccatgcatcaaagagttatagaattgaacctacaaggatatgaattgcatggatc |
19608113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 10556769 - 10556853
Alignment:
| Q |
140 |
cttgaatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttacagagttga |
224 |
Q |
| |
|
||||| ||||||||| ||| |||||||| ||||| ||| ||||||||||||||| |||||||| || ||||||| ||||||| |
|
|
| T |
10556769 |
cttgattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcaaagagttactgagttga |
10556853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 10602531 - 10602679
Alignment:
| Q |
69 |
taggaaaccaaactgatcatttggcattgctcaaattcaaagaatcaataactagtgacccatacaatactcttgaatcttggaattcttccatccattt |
168 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||| || |||| ||||||| ||||| || || || ||||||||| ||| | ||| || |
|
|
| T |
10602531 |
taggaaaccaaactgatcatttggctttgctccaattcaagcaactaatatctagtgatccatatggtatcctagattcttggaatagttcaacccactt |
10602630 |
T |
|
| Q |
169 |
ctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagttaca |
217 |
Q |
| |
|
||||| ||| ||||||||| |||| | |||| |||| || |||||||| |
|
|
| T |
10602631 |
ttgcaaatggaatggaatcatatgcggtcccaagcatcaaagagttaca |
10602679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 7190878 - 7190925
Alignment:
| Q |
167 |
ttctgcaagtggcatggaatcacatgcaggcccatgcatgaacgagtt |
214 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| || ||||| |
|
|
| T |
7190878 |
ttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagtt |
7190925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 10592729 - 10592764
Alignment:
| Q |
73 |
aaaccaaactgatcatttggcattgctcaaattcaa |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10592729 |
aaaccaaactgatcatctggcattgctcaaattcaa |
10592764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University