View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_high_17 (Length: 462)
Name: NF11813_high_17
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_high_17 |
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Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Complemental strand, 23932340 - 23931909
Alignment:
| Q |
18 |
acaaattgacttcaaaagcagtagcatgggaaaaggataaaagcactgagttcgtatatgatggtgtaagtatcc-tcttagagatacatacaatatcac |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
23932340 |
acaaattgacttcaaaagcagtagcatgggaaaaggataaaagcaccgagttcgtatatgatggtgtaagtacccctcttagagatacatacaatatcac |
23932241 |
T |
|
| Q |
117 |
ctcagcatctattggttggtaatgtctatgtcaaactaatttttattggaatgtcgctttctaggtccgtttagtttctatgcttgaagactacatctta |
216 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23932240 |
ctcagcatctattggttgctcatgtctatgtcaaactaatttttattggaatgtcgctttctaggtccgtttagtttctatgcttgaagactacatctta |
23932141 |
T |
|
| Q |
217 |
ttacggcaagaaaaggaacaagaacgccgtagacagcgggtacgaaccactcattgcatttaaatgtttttccaaaataagttattatctagttataaga |
316 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23932140 |
ttacggcaagaaaaggagcaagaacgtcgtagacagcgggtacgaaccactcattgcatttaaatgtttttccaaaataagttattatctagttataaga |
23932041 |
T |
|
| Q |
317 |
aaaccttgaaaaggagacccttagcgtgatacttgaagttgcttctatgtgactagggatttacgagtttgtgtgtaaggccctatagttaatgataaaa |
416 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23932040 |
aaaccttgagaaggagacccttagcgtgatacttgaagttgcttctatgtgactagggatttacgagtttgtgtgtaaggccctatagttaatgataaaa |
23931941 |
T |
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| Q |
417 |
cctcgagttttgtctcaaaatattgatgtcca |
448 |
Q |
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|||||||||||||||||||||||||| ||||| |
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| T |
23931940 |
cctcgagttttgtctcaaaatattgaagtcca |
23931909 |
T |
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