View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_high_18 (Length: 450)
Name: NF11813_high_18
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 17 - 440
Target Start/End: Complemental strand, 37558639 - 37558216
Alignment:
| Q |
17 |
agtaagattattttacaggccttaaatttgacatggcttcggaaggtttgattatatattttttgcagcaaagtgatcaaacattgctgagttcgaaatc |
116 |
Q |
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| T |
37558639 |
agtaagattattttacaggccttaaatttgacatggcttcggaaggtttgattatatattttttgcagcaaagtgatcaaacattgctgagtttgaaatc |
37558540 |
T |
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| Q |
117 |
ctagttcataacacaaaggaagtagatatctgaaggcatttcctttcccattttattattgatcaatcatttccttttcattcacgatttcagtttcggt |
216 |
Q |
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| T |
37558539 |
ctagttcataacacaaaggaagtagatatctgaaggcatttcctttcccattttattattgatcaatcatttccttttcattcacgatttcagtttcggt |
37558440 |
T |
|
| Q |
217 |
ttttcctaaacacactcaggattattgctagtaaatcaaagaaaaatccagtagcttcactaacactcatatccgttacttcagaccatggatacggctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37558439 |
ttttcctaaacacactcaggattattgctagtaaatcaaagaaaaatccagtagcttcactaacactcatatccgttacttcagaccatggatacggctt |
37558340 |
T |
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| Q |
317 |
cactggttttgttgcttcaagaagaatctccaatggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtctggacaa |
416 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37558339 |
cactggttttgttgcttcaagaagaacctccaatggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtctggacaa |
37558240 |
T |
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| Q |
417 |
agatcctgcagaatttcacctttg |
440 |
Q |
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|||||||||||||||||||||||| |
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| T |
37558239 |
agatcctgcagaatttcacctttg |
37558216 |
T |
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