View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11813_high_19 (Length: 450)

Name: NF11813_high_19
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11813_high_19
NF11813_high_19
[»] scaffold0218 (1 HSPs)
scaffold0218 (161-431)||(585-855)
[»] scaffold0124 (1 HSPs)
scaffold0124 (161-435)||(4436-4710)
[»] scaffold0141 (1 HSPs)
scaffold0141 (161-435)||(24363-24637)
[»] chr7 (11 HSPs)
chr7 (161-435)||(27104410-27104684)
chr7 (161-435)||(27173641-27173915)
chr7 (161-435)||(7827260-7827534)
chr7 (1-163)||(9595463-9595625)
chr7 (1-163)||(9646426-9646588)
chr7 (29-163)||(32706330-32706464)
chr7 (272-435)||(4443394-4443557)
chr7 (30-144)||(5247437-5247551)
chr7 (274-427)||(13459484-13459637)
chr7 (259-378)||(14218512-14218631)
chr7 (242-311)||(17132119-17132188)
[»] chr6 (18 HSPs)
chr6 (161-435)||(16379145-16379419)
chr6 (161-435)||(16646741-16647015)
chr6 (268-431)||(1660619-1660782)
chr6 (161-435)||(21412298-21412572)
chr6 (237-435)||(16103616-16103814)
chr6 (161-434)||(22365137-22365410)
chr6 (32-163)||(30518311-30518442)
chr6 (30-163)||(18781745-18781878)
chr6 (26-163)||(20414932-20415069)
chr6 (26-163)||(20419665-20419802)
chr6 (30-163)||(18553331-18553462)
chr6 (60-163)||(20417579-20417682)
chr6 (241-435)||(14149713-14149906)
chr6 (30-141)||(6230684-6230795)
chr6 (30-123)||(20417683-20417776)
chr6 (258-435)||(19982373-19982550)
chr6 (84-144)||(2147847-2147908)
chr6 (161-205)||(16101250-16101294)
[»] chr3 (16 HSPs)
chr3 (161-435)||(30150357-30150631)
chr3 (161-431)||(15943465-15943735)
chr3 (161-431)||(6149723-6149993)
chr3 (161-435)||(13964221-13964495)
chr3 (161-435)||(8271265-8271539)
chr3 (161-435)||(17201636-17201910)
chr3 (168-425)||(22149622-22149879)
chr3 (32-163)||(5553466-5553597)
chr3 (275-434)||(17321461-17321620)
chr3 (63-163)||(22271157-22271259)
chr3 (30-163)||(17236870-17236997)
chr3 (369-435)||(25768423-25768489)
chr3 (84-144)||(16347198-16347259)
chr3 (84-144)||(47418036-47418097)
chr3 (361-425)||(22259971-22260035)
chr3 (361-425)||(22268464-22268528)
[»] chr1 (17 HSPs)
chr1 (161-435)||(20828091-20828365)
chr1 (161-431)||(20928440-20928710)
chr1 (161-431)||(20528439-20528709)
chr1 (30-161)||(20127063-20127194)
chr1 (26-163)||(22062171-22062308)
chr1 (259-435)||(22129138-22129314)
chr1 (168-382)||(23312571-23312785)
chr1 (1-163)||(24157083-24157243)
chr1 (30-163)||(6473766-6473899)
chr1 (262-434)||(41214561-41214733)
chr1 (1-162)||(20190459-20190619)
chr1 (258-424)||(20172616-20172780)
chr1 (271-425)||(21200280-21200434)
chr1 (81-144)||(40554445-40554509)
chr1 (86-144)||(48463137-48463195)
chr1 (86-141)||(48463719-48463774)
chr1 (1-50)||(36233800-36233850)
[»] chr4 (14 HSPs)
chr4 (161-431)||(15000017-15000295)
chr4 (161-435)||(15289785-15290059)
chr4 (1-163)||(9167148-9167310)
chr4 (1-163)||(15019309-15019472)
chr4 (1-163)||(15017669-15017832)
chr4 (4-163)||(39488176-39488336)
chr4 (29-163)||(17266724-17266859)
chr4 (30-163)||(34098712-34098844)
chr4 (271-431)||(12339505-12339665)
chr4 (26-148)||(17780701-17780826)
chr4 (30-141)||(23090869-23090979)
chr4 (62-128)||(19460135-19460201)
chr4 (356-435)||(18272652-18272731)
chr4 (84-143)||(11099045-11099105)
[»] scaffold0465 (1 HSPs)
scaffold0465 (161-431)||(12259-12529)
[»] scaffold0266 (1 HSPs)
scaffold0266 (161-431)||(6494-6764)
[»] scaffold0008 (2 HSPs)
scaffold0008 (161-431)||(131123-131393)
scaffold0008 (161-435)||(27176-27450)
[»] chr8 (6 HSPs)
chr8 (161-435)||(21847407-21847681)
chr8 (161-431)||(16415523-16415792)
chr8 (161-435)||(20649425-20649699)
chr8 (168-433)||(21193624-21193889)
chr8 (32-163)||(20730868-20730999)
chr8 (84-144)||(23015809-23015870)
[»] chr5 (8 HSPs)
chr5 (161-431)||(23508960-23509230)
chr5 (161-435)||(24584486-24584759)
chr5 (1-163)||(29950079-29950242)
chr5 (1-163)||(29951717-29951880)
chr5 (1-163)||(244467-244630)
chr5 (30-163)||(4568243-4568376)
chr5 (272-435)||(21828203-21828365)
chr5 (78-123)||(34597760-34597804)
[»] scaffold0225 (1 HSPs)
scaffold0225 (161-431)||(26796-27066)
[»] scaffold0467 (2 HSPs)
scaffold0467 (161-435)||(251-525)
scaffold0467 (161-435)||(12961-13235)
[»] chr2 (10 HSPs)
chr2 (161-431)||(22281107-22281377)
chr2 (32-163)||(15409793-15409924)
chr2 (30-163)||(6050249-6050382)
chr2 (274-435)||(25131574-25131735)
chr2 (30-162)||(33809366-33809492)
chr2 (81-144)||(44792884-44792948)
chr2 (84-144)||(24808197-24808258)
chr2 (84-144)||(18535362-18535423)
chr2 (86-144)||(24806340-24806399)
chr2 (105-144)||(31939075-31939114)
[»] scaffold1140 (1 HSPs)
scaffold1140 (171-431)||(1-261)
[»] scaffold0673 (1 HSPs)
scaffold0673 (161-429)||(5006-5274)
[»] scaffold0120 (1 HSPs)
scaffold0120 (161-433)||(25579-25851)
[»] scaffold0610 (1 HSPs)
scaffold0610 (168-435)||(3556-3823)
[»] scaffold0009 (1 HSPs)
scaffold0009 (168-435)||(96934-97199)
[»] scaffold0011 (5 HSPs)
scaffold0011 (161-384)||(182390-182613)
scaffold0011 (246-419)||(73280-73453)
scaffold0011 (246-419)||(77661-77834)
scaffold0011 (161-205)||(73457-73501)
scaffold0011 (161-205)||(77838-77882)
[»] scaffold0021 (4 HSPs)
scaffold0021 (161-435)||(90902-91176)
scaffold0021 (168-435)||(8564-8831)
scaffold0021 (274-435)||(20506-20667)
scaffold0021 (274-435)||(30082-30243)
[»] scaffold0162 (1 HSPs)
scaffold0162 (241-435)||(16381-16575)
[»] scaffold0462 (1 HSPs)
scaffold0462 (161-435)||(3103-3385)
[»] scaffold0138 (1 HSPs)
scaffold0138 (162-435)||(25330-25603)
[»] scaffold0010 (1 HSPs)
scaffold0010 (30-163)||(136749-136882)
[»] scaffold0302 (1 HSPs)
scaffold0302 (161-320)||(1611-1770)
[»] scaffold0615 (1 HSPs)
scaffold0615 (241-435)||(9019-9205)
[»] scaffold0585 (1 HSPs)
scaffold0585 (30-163)||(899-1032)
[»] scaffold0076 (1 HSPs)
scaffold0076 (26-163)||(54759-54896)
[»] scaffold0170 (1 HSPs)
scaffold0170 (241-376)||(35556-35691)
[»] scaffold0017 (1 HSPs)
scaffold0017 (30-163)||(4620-4753)
[»] scaffold0075 (1 HSPs)
scaffold0075 (29-163)||(25787-25921)
[»] scaffold0022 (1 HSPs)
scaffold0022 (297-431)||(8070-8204)
[»] scaffold0083 (1 HSPs)
scaffold0083 (29-162)||(33209-33341)
[»] scaffold0049 (1 HSPs)
scaffold0049 (262-435)||(35803-35975)
[»] scaffold0561 (1 HSPs)
scaffold0561 (161-434)||(5644-5917)
[»] scaffold0151 (1 HSPs)
scaffold0151 (219-435)||(32505-32720)
[»] scaffold0146 (3 HSPs)
scaffold0146 (30-163)||(6608-6740)
scaffold0146 (30-163)||(9503-9635)
scaffold0146 (30-163)||(17170-17302)
[»] scaffold0096 (1 HSPs)
scaffold0096 (74-163)||(22641-22730)
[»] scaffold0112 (1 HSPs)
scaffold0112 (272-432)||(4001-4161)
[»] scaffold0058 (1 HSPs)
scaffold0058 (258-435)||(77918-78095)
[»] scaffold0269 (1 HSPs)
scaffold0269 (1-101)||(1491-1592)
[»] scaffold0018 (2 HSPs)
scaffold0018 (266-428)||(49164-49326)
scaffold0018 (84-144)||(141-202)
[»] scaffold0193 (1 HSPs)
scaffold0193 (367-435)||(2182-2250)
[»] scaffold0254 (1 HSPs)
scaffold0254 (84-144)||(24311-24372)
[»] scaffold0180 (1 HSPs)
scaffold0180 (84-144)||(10850-10911)
[»] scaffold0139 (1 HSPs)
scaffold0139 (84-144)||(6465-6526)
[»] scaffold0002 (1 HSPs)
scaffold0002 (84-144)||(374790-374851)
[»] scaffold0025 (1 HSPs)
scaffold0025 (84-144)||(55425-55486)
[»] scaffold0013 (1 HSPs)
scaffold0013 (84-144)||(241614-241675)


Alignment Details
Target: scaffold0218 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 161 - 431
Target Start/End: Complemental strand, 855 - 585
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  855 caccagattctctcttctttcctttgtccttgctgtaaggttttccagccccatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 756  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  755 agctttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatatccggcctaagc 656  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||    
T  655 ccactctcaaacttcacacacttcgaaaccatagcatcctccgcattgatgtagagacaaaacctcgaaag 585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 4710 - 4436
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4710 caccagcttctctcttctttcctttgtccttgctgtaaggttttccagccccatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 4611  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4610 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 4511  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  4510 ccactttcaaacttcacacacttcgaaaccatagcatcctccgcattgatgtagggacaaaaccttgcaagctcc 4436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 161 - 435
Target Start/End: Original strand, 24363 - 24637
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24363 caccagcttctctcttctttcctttgtccttgctgtaaggttttccagccccatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 24462  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24463 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 24562  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| | |||||||    
T  24563 ccactttcaaacttcacacacttcgaaaccatagcatcctccgcattgatgtaggggcaaaaccttgcaagctcc 24637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 27104684 - 27104410
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27104684 caccagcttctctcttctttcctttgtccttgctgtaaggttttccagccccatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 27104585  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27104584 agctttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 27104485  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  27104484 ccactttcaaacttcacacacttggaaaccatagcatcctccgcattgatgtagggacaaaaccttgcaagctcc 27104410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 161 - 435
Target Start/End: Original strand, 27173641 - 27173915
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27173641 caccagcttctctcttctttcctttgtccttgctgtaaggttttccagccccatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 27173740  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27173741 agctttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 27173840  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  27173841 ccactttcaaacttcacacacttggaaaccatagcatcctccgcattgatgtagggacaaaaccttgcaagctcc 27173915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 161 - 435
Target Start/End: Original strand, 7827260 - 7827534
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7827260 caccagcttctctcttctttcctttgtccttgctgtaaggttttccagccccatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 7827359  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7827360 agctttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 7827459  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||| |||||||||||||||||  |||||||||||||||| |||||||||||||| |||||||| | |||||||    
T  7827460 ccactttcaaacttcacacacttggaaaccatagcatcctccgcattgatgtaggggcaaaaccttgcaagctcc 7827534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 9595625 - 9595463
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaaggaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaacc 100  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9595625 taaatagagcacgaaaatgatatgtaaagaagttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaacc 9595526  T
Q  101 atccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9595525 atccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 9595463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 9646588 - 9646426
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaaggaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaacc 100  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9646588 taaatagagcacgaaaatgatatgtaaagaagttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaacc 9646489  T
Q  101 atccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9646488 atccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 9646426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 32706330 - 32706464
Alignment:
Q  29 gaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatt 128  Q
    |||||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32706330 gaagttgaattttatagaattttacacatatgtgtattaagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcacatt 32706429  T
Q  129 tcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||| ||||||||||| |||||||||||||    
T  32706430 tcttgtggcaatcctcgcatctatagacttatcac 32706464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 272 - 435
Target Start/End: Original strand, 4443394 - 4443557
Alignment:
Q  272 catcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaaa 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| | ||||| |||||    
T  4443394 catcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctccttaacacacatatactgatagatatccggcctatgtccactttcaaa 4443493  T
Q  372 cttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
     |||||||||||  | ||||| ||||||||| |||| ||||| | | ||||||||| |||||||    
T  4443494 tttcacacacttggacaccattgcatcctcaacattaatgtacgcataaaacctcgcaagctcc 4443557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 30 - 144
Target Start/End: Complemental strand, 5247551 - 5247437
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    |||||||||  | ||||||||||| | |||| || |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  5247551 aagttgaattgtgtagaattttacacgtatgagtgttgagagctttgtctcttatggttctggattgaatcatccttgatcttatcaagaaatcatattt 5247452  T
Q  130 cttgtggcgatcctc 144  Q
     |||||| |||||||    
T  5247451 tttgtggagatcctc 5247437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 274 - 427
Target Start/End: Original strand, 13459484 - 13459637
Alignment:
Q  274 tcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaaact 373  Q
    ||||| || ||||||||||| |||||||||||||| |||||||  || |||| ||||||||  ||||||||||| ||| || |||||||||  |||||||    
T  13459484 tcatcgaatatacgacacttgtgcaccaaagtatcgaagtctctaatatcctaaacacacacatactgatagatatccagcttaagcccacgttcaaact 13459583  T
Q  374 tcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcg 427  Q
    ||||||||||| ||||||| ||||| ||  |||| ||||||||| |||||||||    
T  13459584 tcacacacttcgaaaccattgcatcttcgacattaatgtagggataaaacctcg 13459637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 259 - 378
Target Start/End: Original strand, 14218512 - 14218631
Alignment:
Q  259 ttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaa 358  Q
    |||||||||||||||||||||||||| | |||||| |||||||||||||| || || | |||||| || | ||| |||||||| || || || ||||| |    
T  14218512 ttagccttcccagcatcatcaaacatgcaacacttgtgcaccaaagtatcgaaatccctgatctcatgcaaacaaatgtactggtaaatctctggcctca 14218611  T
Q  359 gcccactctcaaacttcaca 378  Q
    | ||| ||||||||||||||    
T  14218612 gaccattctcaaacttcaca 14218631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 17132119 - 17132188
Alignment:
Q  242 ccttgtagtaattagacttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaa 311  Q
    ||||||||||||||  |||||||||||| |||||||||||||| | |||||| | ||||||||| |||||    
T  17132119 ccttgtagtaattatccttagccttccccgcatcatcaaacatcctacacttgttcaccaaagtgtcaaa 17132188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 16379419 - 16379145
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16379419 caccagcttctctcttctttcctttgtccttgctgtaaggttttccagccccatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 16379320  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16379319 agctttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 16379220  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  16379219 ccactttcaaacttcacacacttggaaaccatagcatcctccgcattgatgtagggacaaaaccttgcaagctcc 16379145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 16647015 - 16646741
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||||||||| || |||||||||||||| | | | | ||  ||  | ||| |||| |||  ||||||||||||||||||||||||    
T  16647015 caccagattctctcttctttcctttatctttgctgtaaggtttcccaactccatagcccttccctttcttctcattctgagccttgtagtaattagactt 16646916  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  16646915 aaccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctccttaacacacatgtactgatagatatccggcctaagc 16646816  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  16646815 ccactctcaaacttcacacacttcgaaaccatagcatcctcagcattgatgtagggacaaaaccttgcaagctcc 16646741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 268 - 431
Target Start/End: Complemental strand, 1660782 - 1660619
Alignment:
Q  268 ccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactct 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1660782 ccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgaccggcctaagcccactct 1660683  T
Q  368 caaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1660682 caaacttcacacacttcgaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 1660619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 21412572 - 21412298
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||| || ||||||||| |||| ||||| | | | | ||| ||| || ||||||| | |  ||||||||||||||||||||  ||    
T  21412572 caccagcttctctcttcttccccttgtccttgttgtacggtttcccaactccatggcctttttctctcttcttattctgagccttgtagtaattagcatt 21412473  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    | |  ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  21412472 aactctcccagcatcaacaaacatgcaacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatatactgatagatatccggcctaagc 21412373  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||| |||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||||||||||    
T  21412372 ccactttcaaacttcacacacttcgaaaccatagcatcttcagcattgatgtacggacaaaacttcgaaagctcc 21412298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 237 - 435
Target Start/End: Original strand, 16103616 - 16103814
Alignment:
Q  237 ctgagccttgtagtaattagacttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatg 336  Q
    |||||||||||||||| ||| ||||||  | |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||  || ||||||    
T  16103616 ctgagccttgtagtaactagtcttagctcttccagcatcatcaaacatacgacacttttgcaccaaagtatgaaagtctcggatctcctagacgcacatg 16103715  T
Q  337 tactgatagatgtccggcctaagcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||    
T  16103716 tactgatagatatccggcctaagcccactctcaaacttcacacacttcgaaaccatagcatcttcagcattgatgtagggaaaaaacctggaaagctcc 16103814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 161 - 434
Target Start/End: Complemental strand, 22365410 - 22365137
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||| |||||||||||| |||| ||||||| | | | ||| |||| ||||||||| |||  ||   ||||||||||||||| |||    
T  22365410 caccagcttctctcttcttccctttgtccttgttgtacggttttccaactccatggcctcctcctctcttctcattctttaccttgtagtaattagcctt 22365311  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    | |  |||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  22365310 aactctcccggcatcatcaaacatacgacacttatacaccaaagtatcaaaatctcggatctcctgaacacacatatactgatagatatccggcctaagc 22365211  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctc 434  Q
     |||| |||||||||||||||||| ||||||| ||||| ||| |||||||||| ||| |||| |||||||||||    
T  22365210 tcactttcaaacttcacacacttcgaaaccattgcatcttcaacattgatgtatggaaaaaatctcgaaagctc 22365137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 32 - 163
Target Start/End: Complemental strand, 30518442 - 30518311
Alignment:
Q  32 gttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 131  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30518442 gttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 30518343  T
Q  132 tgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||    
T  30518342 tgtggcgatcctcgcatccatagacttatcac 30518311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 18781745 - 18781878
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18781745 aagttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatattt 18781844  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||    
T  18781845 cttgtggcgatcctcgcatccatagacttatcac 18781878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 20415069 - 20414932
Alignment:
Q  26 aaggaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcat 125  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20415069 aagggagttgaattttatagaattttacacatatgtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcat 20414970  T
Q  126 atttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20414969 atttcttgtggcgatcctcgcatccatagacttatcac 20414932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 20419802 - 20419665
Alignment:
Q  26 aaggaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcat 125  Q
    |||| |||||||| |||||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20419802 aagggagttgaattttatagaattttacacatatgtgtattgagagtcttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcat 20419703  T
Q  126 atttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20419702 atttcttgtggcgatcctcgcatccatagacttatcac 20419665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 18553331 - 18553462
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    ||||||||| |||||||||||||| |||  ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18553331 aagttgaattttatagaattttacacat--gtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatattt 18553428  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||    
T  18553429 cttgtggcgatcctcgcatccatagacttatcac 18553462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 20417682 - 20417579
Alignment:
Q  60 gtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagactta 159  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20417682 gtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagactta 20417583  T
Q  160 tcac 163  Q
    ||||    
T  20417582 tcac 20417579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 241 - 435
Target Start/End: Original strand, 14149713 - 14149906
Alignment:
Q  241 gccttgtagtaattagacttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtact 340  Q
    |||||||| |||| ||||||| |  | || || ||||||||||||||||||| |||||| || |||||||| ||||||||||| ||||||||||| |||     
T  14149713 gccttgtaataatcagacttaactcttccggcgtcatcaaacatacgacactgatgcac-aaggtatcaaaatctcggatctcttgaacacacatataca 14149811  T
Q  341 gatagatgtccggcctaagcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||||  ||| ||||||||||||| ||||| |||||||||||  | ||||| |||||||||||||||||||| |||||||||||||| ||||||    
T  14149812 gatagaaatccagcctaagcccactttcaaatttcacacacttggacaccatcgcatcctcagcattgatgtacggacaaaacctcgacagctcc 14149906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 6230795 - 6230684
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    ||||||||| || ||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6230795 aagttgaattttgtagaattttacacatatgtgtattgagagttttgactcttgtggttctggattgaaccatccttgatcttatcaagaaatcacattt 6230696  T
Q  130 cttgtggcgatc 141  Q
    ||| ||||||||    
T  6230695 cttatggcgatc 6230684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 123
Target Start/End: Complemental strand, 20417776 - 20417683
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatc 123  Q
    ||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20417776 aagttgaattttatagaattttacacatatgtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatc 20417683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 258 - 435
Target Start/End: Complemental strand, 19982550 - 19982373
Alignment:
Q  258 cttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggccta 357  Q
    |||||||||| | || ||||||||||||||| |||| || |||||||||| ||| ||||||||||| |||| ||  ||||||||||| || || |||||     
T  19982550 cttagccttctcggcgtcatcaaacatacgatacttgtgtaccaaagtataaaaatctcggatctcatgaaaacgtatgtactgataaatctcgggcctc 19982451  T
Q  358 agcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |  | ||||||||||||| |||| ||  ||||||||||||||||| |||| || || | ||||||||| || ||||||    
T  19982450 aaacgactctcaaacttctcacattttgaaaccatagcatcctcaacattaatatacgaacaaaaccttgatagctcc 19982373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 2147908 - 2147847
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  2147908 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 2147847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 16101250 - 16101294
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttc 205  Q
    |||||| ||||||||||||||||||||| ||| ||||||||||||    
T  16101250 caccagcttctctcttctttcctttgtctttgttgtaaggttttc 16101294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 161 - 435
Target Start/End: Original strand, 30150357 - 30150631
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30150357 caccagcttctctcttctttcctttgtccttgctgtaaggttttccagccccatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 30150456  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30150457 agctttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 30150556  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  30150557 ccactttcaaacttcacacacttggaaaccatagcatcctccgcattgatgtagggacaaaaccttgcaagctcc 30150631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 161 - 431
Target Start/End: Complemental strand, 15943735 - 15943465
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | | | ||| |||||||||||||| |||||||||||||| ||||||||||||||    
T  15943735 caccagattctctcttctttcctttgtccttgctgtaaggttttccaactccatggcctcttcctctcttctcaccctgagccttatagtaattagactt 15943636  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15943635 agctttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatatccggcctaagc 15943536  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  15943535 ccactctcaaacttcacgcacttcgaaatcatagcatcctcagcattgatgtagggacaaaacctcgaaag 15943465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 161 - 431
Target Start/End: Complemental strand, 6149993 - 6149723
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||||||||||||||||||||||||||||| |||||||||||| | | | ||| |||||||||||||| |||  |||||||||||||||| ||| |||    
T  6149993 caccagattctctcttctttcctttgtccttgttgtaaggttttccaactccatggcctcttcctctcttatcattctgagccttgtagtaactagtctt 6149894  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  6149893 agctttcccaacatcatcaaacatacaacactaatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatattcggcctaagc 6149794  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6149793 ccactctcaaacttcacatacttcaaaaccatagcatcctcagcattgatgtaggggcaaaacctcgaaag 6149723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 13964495 - 13964221
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | | | | ||  ||  | ||| |||| |||  ||||||||||||||||||||||||    
T  13964495 caccagattctctcttctttcctttatccttgctgtaaggtttcccaactccatagcccttccctttcttctcattctgagccttgtagtaattagactt 13964396  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13964395 aaccctcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 13964296  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  13964295 ccactctcaaacttcacacacttggaaaccatagcatcctcagcattgatgtagggacaaaaccttgcaagctcc 13964221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 8271539 - 8271265
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | | | | ||  ||  | ||| |||| |||  ||||||||||||||||||||||||    
T  8271539 caccagattctctcttctttcctttatccttgctgtaaggtttcccaactccatagcccttccctttcttctcattctgagccttgtagtaattagactt 8271440  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8271439 aaccttcccagcatcatcaaacatacgacacttattcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 8271340  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  8271339 ccactttcaaacttcacacactttgaaaccatagcatcctcagcattgatgtagggacaaaaccttgcaagctcc 8271265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 161 - 435
Target Start/End: Original strand, 17201636 - 17201910
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| ||||||||||||  || |||||||| |||| ||||||| | | | ||| |||||||||||||| |||  |||  |||| |||||||||| |||    
T  17201636 caccagcttctctcttcttctctctgtccttgttgtacggttttccaactccatggcctcttcctctcttctcattctgtaccttttagtaattagcctt 17201735  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    | |  |||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||| ||||||||||| ||||||||||||    
T  17201736 aactctcccggcatcatcaaacatacgacacttatgcaccaaagtatcaaaatctaggatctcctaaacacacatatactgatagatatccggcctaagc 17201835  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||| |||||||||||||||||  ||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  17201836 ccactttcaaacttcacacacttggaaaccatcgcatcctcagcattgatgtacggacaaaacctcaaaagctcc 17201910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 168 - 425
Target Start/End: Complemental strand, 22149879 - 22149622
Alignment:
Q  168 ttctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagacttagccttc 267  Q
    ||||||||||||||||||||||||| |||||||||||| | | | ||| || ||||||||||| ||||  || |||||||||||||||| |||||| |||    
T  22149879 ttctctcttctttcctttgtccttgttgtaaggttttccaactccatggccccttcctctcttctcacgttgcgccttgtagtaattagtcttagctttc 22149780  T
Q  268 ccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactct 367  Q
    |||||||||||||||||| ||||||| ||||||||||| ||||| || |||||||| || |||||||||||||||||||  ||  ||| |||||||||||    
T  22149779 ccagcatcatcaaacatatgacacttgtgcaccaaagtgtcaaaatcacggatctcttgcacacacatgtactgatagacatctagccaaagcccactct 22149680  T
Q  368 caaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacct 425  Q
    ||||||||||||||||  | ||||| |||| |||  ||||||||||  ||||||||||    
T  22149679 caaacttcacacacttggacaccattgcattctcgacattgatgtacagacaaaacct 22149622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 5553466 - 5553597
Alignment:
Q  32 gttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 131  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5553466 gttgaattttatagaattttacacatatgtgtattgagagctttatctcttgtggttctggattgaaccatcattgatcttatcaagaaatcatatttct 5553565  T
Q  132 tgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||| ||||||||||||||    
T  5553566 tgtggcgatcctcgcatacatagacttatcac 5553597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 275 - 434
Target Start/End: Complemental strand, 17321620 - 17321461
Alignment:
Q  275 catcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaaactt 374  Q
    |||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||||| ||    
T  17321620 catcaaacatacgacacttatgcaccaaggtatcaaactctcgaatctcctgaacacacatatactgatagatatccggcctaagtccactttcaaattt 17321521  T
Q  375 cacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctc 434  Q
    |||||||||  | ||||| ||||||||| |||| ||||| |   ||||||||||||||||    
T  17321520 cacacacttggacaccatcgcatcctcaacattaatgtacgagaaaaacctcgaaagctc 17321461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 22271157 - 22271259
Alignment:
Q  63 tattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttcttgtggcgatc--ctcgcatccatagacttat 160  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||    
T  22271157 tattgagagttttgtctcttgtggttctggattgaaccatcattgatcttatcaagaaatcacatttcttgtggcgatcatctcgcatccatagacttat 22271256  T
Q  161 cac 163  Q
    |||    
T  22271257 cac 22271259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 17236997 - 17236870
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    ||||||||| || ||||||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||||      ||||||||| |||||| ||||    
T  17236997 aagttgaattttgtagaattttacacttatgtgtatcgagagttttgtctcttgtggttctggtttgaaccat------tcttatcaaaaaatcacattt 17236904  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    |||||||||||||||||||| ||| |||||||||    
T  17236903 cttgtggcgatcctcgcatcgataaacttatcac 17236870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 369 - 435
Target Start/End: Original strand, 25768423 - 25768489
Alignment:
Q  369 aaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||||||||  ||||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  25768423 aaacttcacacactttgaaaccatagcatcttcagcattgatgtacggacaaaaccttgaaagctcc 25768489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 16347198 - 16347259
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  16347198 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 16347259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 47418097 - 47418036
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  47418097 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 47418036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 425
Target Start/End: Original strand, 22259971 - 22260035
Alignment:
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacct 425  Q
    |||||||||||||| ||||||||  | ||||||||||| ||| ||||||| || |||||||||||    
T  22259971 ccactctcaaacttaacacacttggacaccatagcatcttcaacattgatataaggacaaaacct 22260035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 425
Target Start/End: Complemental strand, 22268528 - 22268464
Alignment:
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacct 425  Q
    |||||||||||||| ||||||||  | ||||||||||| ||| ||||||| || |||||||||||    
T  22268528 ccactctcaaacttaacacacttggacaccatagcatcttcaacattgatataaggacaaaacct 22268464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 20828365 - 20828091
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20828365 caccagcttctctcttctttcctttgtccttgctgtaaggttttccagccccatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 20828266  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20828265 agctttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 20828166  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||||||||||| | |||||||    
T  20828165 ccactttcaaacttcacacacttggaaaccatagcatcctccgcattgatgtagggacaaaaccttgcaagctcc 20828091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 161 - 431
Target Start/End: Original strand, 20928440 - 20928710
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||| | | | ||| |||||||||| ||| ||||||||||||||  |||||||||||||    
T  20928440 caccagattctctcttcttacttttgtccttgctgaaaggttttccaactccatggcctcttcctcccttctcaccctgagccttacagtaattagactt 20928539  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20928540 agctttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatatccggcctaagc 20928639  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||||    
T  20928640 ccactctcaaacttcacacacttcgaaatcatagcatcctgagcattgatgtagggacaaaaccttgaaag 20928710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 161 - 431
Target Start/End: Original strand, 20528439 - 20528709
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||||||| ||||||||||||||||||||| |||||||||||| | | | ||| |||||||||||| | |||| || |||||||||||||||||||||    
T  20528439 caccagattccctcttctttcctttgtccttgttgtaaggttttccaactccatggcctcttcctctcctatcactctaagccttgtagtaattagactt 20528538  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||    
T  20528539 agctttcccagcatcatcaaacatacgatacttattcaccaaagtatcaaagtctcggatctcctgaacacatatgtactggtagatctccggcctaagc 20528638  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||| |||||||||||||    
T  20528639 ccactctcaaacttcacacacttcgaaatcatagcatcctcaacattgatgtagggaaaaaacctcgaaag 20528709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 30 - 161
Target Start/End: Original strand, 20127063 - 20127194
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20127063 aagttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 20127162  T
Q  130 cttgtggcgatcctcgcatccatagacttatc 161  Q
    ||||||||||||||||||||||||||||||||    
T  20127163 cttgtggcgatcctcgcatccatagacttatc 20127194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 26 - 163
Target Start/End: Complemental strand, 22062308 - 22062171
Alignment:
Q  26 aaggaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcat 125  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22062308 aaggaagttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcat 22062209  T
Q  126 atttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22062208 atttcttgtggcgatcctcgcatccatagacttatcac 22062171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 259 - 435
Target Start/End: Complemental strand, 22129314 - 22129138
Alignment:
Q  259 ttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaa 358  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||    
T  22129314 ttagccttcgcggcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctaggatctcctaaacacacatatactgatagatatccggcctaa 22129215  T
Q  359 gcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||||| ||||| |||||||||||| ||||||| |||||||||||||||||||| | ||||||||| | |||||||    
T  22129214 gcccactttcaaatttcacacacttcgaaaccatcgcatcctcagcattgatgtacgaacaaaaccttgcaagctcc 22129138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 168 - 382
Target Start/End: Complemental strand, 23312785 - 23312571
Alignment:
Q  168 ttctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagacttagccttc 267  Q
    ||||||||||||||||||||||||| |||| ||||| | | | | ||| |   |||||||||| |||  ||||||||||||||| |||| |||| |  |     
T  23312785 ttctctcttctttcctttgtccttgttgtacggtttcccaactccatgactctttcctctcttctcattctgagccttgtagtagttagccttaactctt 23312686  T
Q  268 ccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactct 367  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |    
T  23312685 ccagcatcatcaaacatacgacacttatgcaccaaagtatcaaaatctcggatctcatgaacacacatatactgatagatatccggcctaagcccacttt 23312586  T
Q  368 caaacttcacacact 382  Q
    |||||||||||||||    
T  23312585 caaacttcacacact 23312571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 24157243 - 24157083
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaaggaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaacc 100  Q
    |||||||||||||||||||||||||||  |||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||    
T  24157243 taaatagagcacgaaaatgatatgtaaa-aagtagaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttatggatcgaacc 24157145  T
Q  101 atccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  24157144 atccttgatcttatcaagaaatcat-tttcttgtggtgatcctcgcatccattgacttatcac 24157083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 6473766 - 6473899
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    ||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  6473766 aagttgaattttatagaattttacacatatgtgtattgagagccttgtctcttgtggttctggattgaatcatccttgatcttatcaagaaatcacattt 6473865  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    |||||| |||||||||||||||||||||||||||    
T  6473866 cttgtgacgatcctcgcatccatagacttatcac 6473899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 262 - 434
Target Start/End: Complemental strand, 41214733 - 41214561
Alignment:
Q  262 gccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcc 361  Q
    |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||    
T  41214733 gccttcccggcgtcatcaaacatgcgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatatactgatagatatccagcctgagcc 41214634  T
Q  362 cactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctc 434  Q
    |||| || ||||||||||||||| |||||||  |||| |||||||| || || |||||||||||| |||||||    
T  41214633 cactttcgaacttcacacacttcgaaaccatcccatcttcagcattaatatacggacaaaacctcaaaagctc 41214561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 20190619 - 20190459
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaaggaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaacc 100  Q
    |||||||| ||||||||||||||||||  ||||||||  || ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  20190619 taaatagatcacgaaaatgatatgtaaacaagttgaactttgtagaattttacacttatgtgtattgagagctttgtctcttgtggttctggattgaacc 20190520  T
Q  101 atccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatca 162  Q
    ||||||||||||||||||| || ||  |||||||||| |||||||| |||||||||||||||    
T  20190519 atccttgatcttatcaagacattat-gttcttgtggcaatcctcgcttccatagacttatca 20190459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 258 - 424
Target Start/End: Original strand, 20172616 - 20172780
Alignment:
Q  258 cttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggccta 357  Q
    ||||||||||||||||||||||||  |  ||||||| |||| |||||||||||| |||| |||||| ||||  || ||||||||||  || || || ||     
T  20172616 cttagccttcccagcatcatcaaatgt--gacacttgtgcatcaaagtatcaaaatctcagatctcatgaaagcagatgtactgatgaatctcgggactc 20172713  T
Q  358 agcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacc 424  Q
    || |||||||||| ||||||||||||  | |||||||||||||||  ||||||| ||||||||||||    
T  20172714 agaccactctcaaccttcacacacttagacaccatagcatcctcaatattgatgaagggacaaaacc 20172780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 271 - 425
Target Start/End: Complemental strand, 21200434 - 21200280
Alignment:
Q  271 gcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaa 370  Q
    |||||||||||||| || ||||| |||||||| |||||||| || | |||||| |||| ||| |||||| |||| || || || || |   |  ||||||    
T  21200434 gcatcatcaaacatgcggcacttgtgcaccaatgtatcaaaatccctgatctcatgaaaacagatgtacggataaatctcgggtctcaaatcgttctcaa 21200335  T
Q  371 acttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacct 425  Q
    ||||||| || ||  | ||||||| |||||| |||||||||||||||||||||||    
T  21200334 acttcacgcattttgataccatagtatcctccgcattgatgtagggacaaaacct 21200280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 40554445 - 40554509
Alignment:
Q  81 ttgtggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    |||||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  40554445 ttgtggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 40554509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 48463137 - 48463195
Alignment:
Q  86 gttctggattgaaccatccttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    |||||||||||||||||  ||||||||||||||||| ||  ||||||||| ||||||||    
T  48463137 gttctggattgaaccattattgatcttatcaagaaaccacgtttcttgtgacgatcctc 48463195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 48463774 - 48463719
Alignment:
Q  86 gttctggattgaaccatccttgatcttatcaagaaatcatatttcttgtggcgatc 141  Q
    ||||| |||||||||||| ||||||||||||||||| ||  ||||||||| |||||    
T  48463774 gttctcgattgaaccatcattgatcttatcaagaaaccacgtttcttgtgtcgatc 48463719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 36233800 - 36233850
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaaggaa--gttgaatattatagaattt 50  Q
    |||||||||||||||||||||||| ||| ||  |||||||||||||||||||    
T  36233800 taaatagagcacgaaaatgatatg-aagaaaaggttgaatattatagaattt 36233850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 161 - 431
Target Start/End: Original strand, 15000017 - 15000295
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  15000017 caccagattctctcttctttcctttgtccttgctgtaaggttttccagcaccatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 15000116  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcac--------caaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccg 352  Q
    |||||| ||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15000117 agcctttccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccg 15000216  T
Q  353 gcctaagcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15000217 gcctaagcccactctcaaacttcacacacttcgaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 15000295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 15290059 - 15289785
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||||||||| ||||||||||||||||| | | | | ||  ||  | ||| || |||||  ||||||||||||||||||||||||    
T  15290059 caccagcttctctcttctttcctttatccttgctgtaaggtttcccaactccatagcccttccctttcctttcattctgagccttgtagtaattagactt 15289960  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15289959 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcagatctcctgaacacacatgtactgatagatgtccggcctaagc 15289860  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||    
T  15289859 ccattctcaaacttcacacacttcgaaaccatagcatcctcagcattgatgtagggacaaaaccttgcaagctcc 15289785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 9167148 - 9167310
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaaggaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaacc 100  Q
    |||||||||||||||||||||||| || |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  9167148 taaatagagcacgaaaatgatatgaaaagaagttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaacc 9167247  T
Q  101 atccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9167248 aaccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 9167310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 15019472 - 15019309
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaag-gaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaac 99  Q
    |||||||||||||||||||||||| ||  || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15019472 taaatagagcacgaaaatgatatgaaaaagaggttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaac 15019373  T
Q  100 catccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15019372 catccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 15019309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 15017832 - 15017669
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaag-gaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaac 99  Q
    |||||||||||||||||||||||| ||  || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  15017832 taaatagagcacgaaaatgatatgaaaaagaggttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaac 15017733  T
Q  100 catccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15017732 catccttgatcttatcaagaaatcatatttcttatggcgatcctcgcatccatagacttatcac 15017669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 39488336 - 39488176
Alignment:
Q  4 atagagcacgaaaatgatatgtaaggaa-gttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccat 102  Q
    |||||||||||||||| |||| ||  || || |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  39488336 atagagcacgaaaatgttatgaaaaaaaagtggaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaatcat 39488237  T
Q  103 ccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39488236 ccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 39488176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 17266859 - 17266724
Alignment:
Q  29 gaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcata-t 127  Q
    |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    
T  17266859 gaagttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcagatt 17266760  T
Q  128 ttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17266759 ttcttgtggtgatcctcgcatccatagacttatcac 17266724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 34098712 - 34098844
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    ||||||||| |||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  34098712 aagttgaattttatagaattttacacttatgtgtattgagaactttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaattat-ttt 34098810  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    |||||||||||||||||||| |||||||||||||    
T  34098811 cttgtggcgatcctcgcatctatagacttatcac 34098844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 271 - 431
Target Start/End: Complemental strand, 12339665 - 12339505
Alignment:
Q  271 gcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaa 370  Q
    |||||||||||||||||| ||||| ||||||| ||||| || || | |||||||||||||||||| ||||  |  || || ||||| |  ||||||||||    
T  12339665 gcatcatcaaacatacgaaacttaggcaccaaggtatcgaaatccctgatctcctgaacacacatatactagtgaatctctggcctcaaaccactctcaa 12339566  T
Q  371 acttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  12339565 acttcacacatttcgaaaccatagcatcctcagcattgatgtaaggacaaaacctcgaaag 12339505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 17780701 - 17780826
Alignment:
Q  26 aaggaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggatt----gaaccatccttgatcttatcaagaaa 121  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||||||| | |||||||||||| ||||||    |||| ||| ||||| |||||||||||    
T  17780701 aaggaagttgaattttatacaattttacacatatgtgtattgagagctct-tctcttgtggttatggattgatcgaactatctttgattttatcaagaaa 17780799  T
Q  122 tcatatttcttgtggcgatcctcgcat 148  Q
    ||| |||||||||||||||||| ||||    
T  17780800 tcacatttcttgtggcgatccttgcat 17780826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 23090979 - 23090869
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    ||||| ||| |||||||||||||  |||||||||||||| |||||||||||||| |||| | ||||||| |||||||||||||||||| ||||  | |||    
T  23090979 aagttaaattttatagaattttatacatatgtgtattgatagctttgtctcttgcggttttagattgaatcatccttgatcttatcaataaattct-ttt 23090881  T
Q  130 cttgtggcgatc 141  Q
    ||||||||||||    
T  23090880 cttgtggcgatc 23090869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 19460135 - 19460201
Alignment:
Q  62 gtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatt 128  Q
    ||||| |||| |||||| ||||||||| || ||||||| || |||||||||||||||||||||||||    
T  19460135 gtattaagagttttgtcccttgtggttatgaattgaactattcttgatcttatcaagaaatcatatt 19460201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 18272652 - 18272731
Alignment:
Q  356 taagcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||  |||||||||||||||||    ||||| |||||||||||||| ||||| | |||||||||||| ||||||    
T  18272652 taagcccaccttcaaacttcacacacttgggcaccattgcatcctcagcattaatgtacgaacaaaacctcgatagctcc 18272731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 11099045 - 11099105
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcct 143  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||| |||||    
T  11099045 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcaatcct 11099105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0465 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0465
Description:

Target: scaffold0465; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 161 - 431
Target Start/End: Complemental strand, 12529 - 12259
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||| |||||| |||||||||||||||||||||||||||| | | | ||| |||||||||||| | |||||||||||||||||||||||||||||    
T  12529 caccagattttctcttatttcctttgtccttgctgtaaggttttccaactccatggcctcttcctctcctatcaccctgagccttgtagtaattagactt 12430  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  12429 aaccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatatctggcctaagc 12330  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  12329 ccactctcaaacttcacacacttcgaaatcatagcatcctcagcattgatgtagggacaaaacctcgaaag 12259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0266 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0266
Description:

Target: scaffold0266; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 161 - 431
Target Start/End: Complemental strand, 6764 - 6494
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6764 caccagattctctcttctttcctttgtccttgttgtaaggttttccaaccttatgtcctcttcctctcttttcaccctgagctttgtagtaattagactt 6665  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  6664 agctttcccagcatcatcaaacatacgacacttatgcactaaagtatcaaagtctcggatctcttgaacacacatgtactgatagatatccggcctaagc 6565  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||||||| |||||||||||    
T  6564 ccactctcaaacttcacacacttcgaaatcatagcatcctcaacattaatgtagggacagaacctcgaaag 6494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 161 - 431
Target Start/End: Complemental strand, 131393 - 131123
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  131393 caccagattctctcttctttcctttgtccttgttgtaaggttttccaaccttatgtcctcttcctctcttttcaccctgagctttgtagtaattagactt 131294  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  131293 agctttcccagcatcatcaaacatacgacacttatgcactaaagtatcaaagtctcggatctcttgaacacacatgtactgatagatatccggcctaagc 131194  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||||||| |||||||||||    
T  131193 ccactctcaaacttcacacacttcgaaatcatagcatcctcaacattaatgtagggacagaacctcgaaag 131123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 161 - 435
Target Start/End: Original strand, 27176 - 27450
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||| |||||||||||||||||||||||||| |||||||||||| | | | ||| ||| |||||||||| |||  ||| |||||||||||||||| |||    
T  27176 caccaaattctctcttctttcctttgtccttgttgtaaggttttccaactccatggccttttcctctcttatcattctgcgccttgtagtaattagtctt 27275  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||| |||||||| |||||||||||     
T  27276 agctttcccagcatcatcaaacatacgacacttatgcaccaaagtataaaagtctaggatctactgaacacacatgtattgatagatatccggcctaagt 27375  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  27376 ccactctcaaacttcacacacttcgaaaccacagcatcctcagcattgatatagggacaaaacctcgaaagctcc 27450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 21847681 - 21847407
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | | | | ||  ||  ||||| |||| |||  ||||||||||||||||||||||||    
T  21847681 caccagattctctcttctttcctttatccttgctgtaaggtttcccaactccatagccctttcctttcttctcattctgagccttgtagtaattagactt 21847582  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  21847581 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcgaatctcctgaacacacatgtactgatagatgtccggcctaagc 21847482  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21847481 ccactctcaaacttcacacacttcgaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 21847407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 161 - 431
Target Start/End: Original strand, 16415523 - 16415792
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| | | | ||| || ||||||||||| |||  |||||||||||||||||||| ||     
T  16415523 caccagattctctcttctttcctttgtccttgttgtacggttttccaactccatggccccttcctctcttatcattctgagccttgtagtaattagtctc 16415622  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| |||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||    
T  16415623 agctttcccagcatcatcaaacat-caacagttatgcaccaaagtatcaaagtctcggatcccctggacacacatgtactgatagatatccggcctaagc 16415721  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16415722 ccactctcaaacttcacacacttcgaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 16415792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 20649699 - 20649425
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| ||| ||||||||||||||||| ||| |||||||||| | | | | ||| ||||||||||| || |||  ||||||||| |||||||||| |||    
T  20649699 caccagcttccctcttctttcctttgtctttgttgtaaggtttcccaactccatgacctcttcctcttttctcattctgagccttatagtaattagtctt 20649600  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    |||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||| ||||||||||||    
T  20649599 agctctcccagcatcattaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgtacatacatttactgatagatatccggcctaagc 20649500  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  20649499 ccactctcaaacttcacacacttcgaaaccatagcatcttcaacattgatgtagggacaaaacctcgaaagctcc 20649425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 168 - 433
Target Start/End: Complemental strand, 21193889 - 21193624
Alignment:
Q  168 ttctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagacttagccttc 267  Q
    |||||||||||||| |||||||||| |||| ||||| | | | | ||| ||  |||||||||| ||||  |||||||||||||| |||| |||| |  |     
T  21193889 ttctctcttctttcttttgtccttgttgtacggtttcccaactccatgaccctttcctctcttctcactttgagccttgtagtagttagccttaactctt 21193790  T
Q  268 ccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactct 367  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |    
T  21193789 ccagcatcatcaaacttacgacacttatgcaccaaagtatcaaaatctcggatctcctgaacacacatatactgatagatatccggcctaagcccacttt 21193690  T
Q  368 caaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagct 433  Q
    ||||||||||||||||| ||||||| ||||| |||||| ||||||| |||||||||||||||||||    
T  21193689 caaacttcacacacttcgaaaccatcgcatcttcagcaatgatgtacggacaaaacctcgaaagct 21193624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 20730868 - 20730999
Alignment:
Q  32 gttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 131  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20730868 gttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatatttct 20730967  T
Q  132 tgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||    
T  20730968 tgtggcgatcctcgcatccatagacttatcac 20730999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 23015870 - 23015809
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  23015870 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 23015809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 161 - 431
Target Start/End: Original strand, 23508960 - 23509230
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||||||||| |||||| |||||||||||| | | | ||| |||||||||||||| |||   |||||||||||||||||||||||    
T  23508960 caccagattctctcttctttcctttatccttgttgtaaggttttccaactccatggcctcttcctctcttatcattatgagccttgtagtaattagactt 23509059  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23509060 agctttcccagcatcatcaaacatacgacacttatgcatcaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatatccggcctaagc 23509159  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    ||||||||||||||| |||||||| ||| ||||||||||| |||||||||||| |||||||||||| ||||    
T  23509160 ccactctcaaacttcgcacacttcgaaatcatagcatccttagcattgatgtatggacaaaacctcaaaag 23509230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 161 - 435
Target Start/End: Original strand, 24584486 - 24584759
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||||||||||||| |||||||| ||||||||||||||||| | | | | ||  ||  | ||| |||| |||  ||||||||||||||||||||||||    
T  24584486 caccagattctctctt-tttcctttatccttgctgtaaggtttcccaactccatagcccttccctttcttctcattctgagccttgtagtaattagactt 24584584  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  24584585 aaccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaactctcggatctcctgaacacacatgtactgatagatatccgacctaagc 24584684  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| | |||||||    
T  24584685 ccactctccaacttcacacacttcgaaaccatagcatcctcaacattgatgtagggacaaaaccttgcaagctcc 24584759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 29950079 - 29950242
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaag-gaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaac 99  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29950079 taaatagagcacgaaaatgatatgaaaaagaagttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaac 29950178  T
Q  100 catccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29950179 caaccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 29950242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 29951717 - 29951880
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaag-gaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaac 99  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29951717 taaatagagcacgaaaatgatatgaaaaagaagttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaac 29951816  T
Q  100 catccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29951817 caaccttgatcttatcaagaaatcatatttcttgtggtgatcctcgcatccatagacttatcac 29951880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 244630 - 244467
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaag-gaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaac 99  Q
    |||||||||||||||||||||||| ||  |  ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  244630 taaatagagcacgaaaatgatatgaaaaaggggttgaattttatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaac 244531  T
Q  100 catccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  244530 catccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 244467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 4568243 - 4568376
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    ||||||||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  4568243 aagttgaattttatagaattttatacttatgtgtattgagagctttgtctcttgtggttctggattgaaccattcttgatcttatcaaaaaatcatattt 4568342  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||    
T  4568343 cttgtggcgatcctcgcatccatagacttatcac 4568376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 272 - 435
Target Start/End: Original strand, 21828203 - 21828365
Alignment:
Q  272 catcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaaa 371  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||  ||||||||||||||||| ||||||||||| ||||||||||||||||| || ||    
T  21828203 catcatcaaacatacgacacttatgcaccaaag-atcgaaatctctaatctcctgaacacacatatactgatagatatccggcctaagcccactttcgaa 21828301  T
Q  372 cttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||||||||||| ||||||| ||||| |||||||| ||||| | |||||||||||||||||||    
T  21828302 cttcacacacttcgaaaccatcgcatcttcagcattaatgtacgtacaaaacctcgaaagctcc 21828365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 34597760 - 34597804
Alignment:
Q  78 ctcttgtggttctggattgaaccatccttgatcttatcaagaaatc 123  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  34597760 ctcttgtggttctggattgaaccatcctt-atcttatcaagaaatc 34597804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 161 - 431
Target Start/End: Original strand, 26796 - 27066
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | | | | ||| ||| ||| | |||| |||  || |||||||||||||||||||||    
T  26796 caccagattctctcttctttcctttatccttgctgtaaggtttcccaactccatggccttttcatttcttctcattctaagccttgtagtaattagactt 26895  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26896 agcttttccagcatcaacaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 26995  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||| |||||    
T  26996 ccactctcaaacttcacacacttcgaaatcatagcatcctcaacattgatgtagggacaaaacctagaaag 27066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0467 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: scaffold0467
Description:

Target: scaffold0467; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 525 - 251
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||| |||||||||||| |||||||||||||||||||| | | | | ||| |||||||| ||||| |||  |||||||||||||||||| | |||    
T  525 caccagattatctcttctttcccttgtccttgctgtaaggtttaccaactccatggcctcttccactcttgtcattctgagccttgtagtaattggtctt 426  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    |||  ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  425 agctctcccagcatcatcaaacatacgacacttatgaaccaaagtatcaaaatctcggatctcctaaacacacatgtactgattgatatccggcctaagc 326  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  325 ccactctcaaacttcacacatttcgaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0467; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 13235 - 12961
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||| |||||||||||| |||||||||||||||||||| | | | | ||| |||||||| ||||| |||  |||||||||||||||||| | |||    
T  13235 caccagattatctcttctttcccttgtccttgctgtaaggtttaccaactccatggcctcttccactcttgtcattctgagccttgtagtaattggtctt 13136  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    |||  ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||||||||||||    
T  13135 agctctcccagcatcatcaaacatacgacacttatgaaccaaagtatcaaaatctcggatctcctaaacacacatgtactgattgatatccggcctaagc 13036  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13035 ccactctcaaacttcacacatttcgaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 12961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 161 - 431
Target Start/End: Original strand, 22281107 - 22281377
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||  | | | ||| |||||| || |||| |||  |||||||||||||||||||| |||    
T  22281107 caccagattctctcttctttcctttgtccttgctgtaaggttttacaactccatggcctctttctttcttctcattctgagccttgtagtaattagtctt 22281206  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| || ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| || ||||||||||||    
T  22281207 agcttttccaacatcatcaaacatacgacacttatgcaccaaagtataaaagtctcggatctcctgaacaaacatgtactgataaatatccggcctaagc 22281306  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||    
T  22281307 ccactctcaaacttcacacacttcgaaatcatagcatcctcagcattgatgtagggacaaaacttcgaaag 22281377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 15409793 - 15409924
Alignment:
Q  32 gttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 131  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15409793 gttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttct 15409892  T
Q  132 tgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||    
T  15409893 tgtggcgatcctcgcatccatagacttatcac 15409924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 6050382 - 6050249
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6050382 aagttgaatattatagaattttacacatatgtgtattaagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 6050283  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||    
T  6050282 cttgtggcgatcctcgcatccatagacttatcac 6050249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 274 - 435
Target Start/End: Original strand, 25131574 - 25131735
Alignment:
Q  274 tcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaaact 373  Q
    |||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||| |||||||| || ||||||||||| ||||| ||||| |    
T  25131574 tcatcaaacatacgacacttttgcaccaaggtatcaaaatctcgaatctcctgaacacacatatactgataaatatccggcctaagtccactttcaaatt 25131673  T
Q  374 tcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||   | ||||| ||||||||| |||| ||||| |||||||||||||||||||||    
T  25131674 tcacacactgtgacaccatcgcatcctcaacattaatgtacggacaaaacctcgaaagctcc 25131735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 33809366 - 33809492
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    ||||||||| |||||||||||||| ||||||||| |||||||  ||||||||||||||| |||||  |||||||||| |||||      ||||    |||    
T  33809366 aagttgaattttatagaattttacacatatgtgtgttgagagtcttgtctcttgtggttttggatcaaaccatccttaatctt------aaatttctttt 33809459  T
Q  130 cttgtggcgatcctcgcatccatagacttatca 162  Q
    ||||||||||||||||||||||| | |||||||    
T  33809460 cttgtggcgatcctcgcatccatcggcttatca 33809492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 44792948 - 44792884
Alignment:
Q  81 ttgtggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    |||||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  44792948 ttgtggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 44792884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 24808258 - 24808197
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  24808258 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 24808197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 18535423 - 18535362
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    |||||||||||||||||||   ||||||||||||||||| ||  ||||||||||||||||||    
T  18535423 tggttctggattgaaccatgtattgatcttatcaagaaaccacgtttcttgtggcgatcctc 18535362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 24806399 - 24806340
Alignment:
Q  86 gttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||| | ||||||||||||||||| ||  |||||||||| |||||||    
T  24806399 gttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggtgatcctc 24806340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 31939075 - 31939114
Alignment:
Q  105 ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  31939075 ttgatcttatcaagaaaccatgtttcttgtggcgatcctc 31939114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1140 (Bit Score: 181; Significance: 1e-97; HSPs: 1)
Name: scaffold1140
Description:

Target: scaffold1140; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 171 - 431
Target Start/End: Original strand, 1 - 261
Alignment:
Q  171 tctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagacttagccttccca 270  Q
    |||||||||||||||||||||| |||||||||||| | | | ||| |||||||||||| | |||| |||||| |||||||||||||||||||| ||||||    
T  1 tctcttctttcctttgtccttgttgtaaggttttccaactccatggcctcttcctctcctatcactctgagcgttgtagtaattagacttagctttccca 100  T
Q  271 gcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaa 370  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  101 acatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactaatagatatccggcctaagcccactctcaa 200  T
Q  371 acttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||| ||||||| | | |||| |||||||| ||||||||||||||||||||||||||||    
T  201 acttcaaacacttcgagatcataccatcctcaacattgatgtagggacaaaacctcgaaag 261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0673 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: scaffold0673
Description:

Target: scaffold0673; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 161 - 429
Target Start/End: Complemental strand, 5274 - 5006
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||||||||||||||| |||||||| ||| |||| ||||||| | ||| ||| |||||||||||||| |||  |||||||||||||||| ||| |||    
T  5274 caccagattctctcttcttccctttgtctttgttgtatggttttccaaccccatggcctcttcctctcttctcattctgagccttgtagtaactagtctt 5175  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
     ||  | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||    
T  5174 ggctcttctagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctggacacacatgtactgatagatatccggtctaagc 5075  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaa 429  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  5074 ccactctcaaacttcacacacttcgaaaccatagcatcctcagcattgatgtaggggcaaaacctcgaa 5006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 161 - 433
Target Start/End: Original strand, 25579 - 25851
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| ||||||||||||||||||||| ||| |||||||||||| | | | ||| ||| |||   |||| |||  |||||||||||||||||||| |||    
T  25579 caccagcttctctcttctttcctttgtctttgttgtaaggttttccaactccatggccttttcgcttcttctcattctgagccttgtagtaattagtctt 25678  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    |||  | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  25679 agctcttccaacatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctcaacacacatatactgatagatatccggcctaagc 25778  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagct 433  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  25779 ccactctcaaacttcacacacttcgaaaccatagcatcttcagcattgatgtaaggacaaaacctcgaaagct 25851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0610 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: scaffold0610
Description:

Target: scaffold0610; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 168 - 435
Target Start/End: Complemental strand, 3823 - 3556
Alignment:
Q  168 ttctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagacttagccttc 267  Q
    ||||||||||||||||||||||||| |||| | ||||| | | | ||| ||| ||||| |||| |||  |||| ||||||||||||||| ||||||  |     
T  3823 ttctctcttctttcctttgtccttgttgtacgattttccatctccatggccttttcctttcttctcattctgaaccttgtagtaattagtcttagctctt 3724  T
Q  268 ccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactct 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |    
T  3723 ccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctggacacacatgtactgatagatatctggcctaagcccactat 3624  T
Q  368 caaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  3623 caaacttcacacacttcgaaaccataacatcttcagcattgatgtagggacaaaacctcgaaagctcc 3556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 168 - 435
Target Start/End: Original strand, 96934 - 97199
Alignment:
Q  168 ttctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagacttagccttc 267  Q
    ||||||||| ||||||||||||||| |||| ||||||| | | | ||| |||||||||||||| |||   ||||||||||||||||||| ||||||  |     
T  96934 ttctctcttatttcctttgtccttgttgtacggttttccaactccatggcctcttcctctcttctcattttgagccttgtagtaattagtcttagctctt 97033  T
Q  268 ccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactct 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||||||| |||||||||||||||||||    
T  97034 ccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctga--acacatatactgatagatatccggcctaagcccactct 97131  T
Q  368 caaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||||||||||||||| |||||||| |||| ||| |||||||||| |||||||||||||||||||||    
T  97132 caaacttcacacacttcgaaaccataacatcttcaacattgatgtacggacaaaacctcgaaagctcc 97199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 161 - 384
Target Start/End: Original strand, 182390 - 182613
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||||||||||||||||||||||||||||| |||||||||||| | | | ||| |||||||||||| | |||| |||||| |||||||||||||||||    
T  182390 caccagattctctcttctttcctttgtccttgttgtaaggttttccaactccatggcctcttcctctcctatcactctgagcgttgtagtaattagactt 182489  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  182490 agctttcccaacatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactaatagatatccggcctaagc 182589  T
Q  361 ccactctcaaacttcacacacttc 384  Q
    |||||||||||||||| |||||||    
T  182590 ccactctcaaacttcaaacacttc 182613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 246 - 419
Target Start/End: Complemental strand, 73453 - 73280
Alignment:
Q  246 gtagtaattagacttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatag 345  Q
    |||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  73453 gtagtaattagacttagctttcccagcatcatcaaacatacgacatttttgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatag 73354  T
Q  346 atgtccggcctaagcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggaca 419  Q
    || ||||||||||||||||||||||| |||||||||||| | | |||||| |||||| |||||| |||||||||    
T  73353 atatccggcctaagcccactctcaaaattcacacacttcgagatcatagcgtcctcaacattgaagtagggaca 73280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 246 - 419
Target Start/End: Complemental strand, 77834 - 77661
Alignment:
Q  246 gtagtaattagacttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatag 345  Q
    |||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  77834 gtagtaattagacttagctttcccagcatcatcaaacatacgacatttgtgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatag 77735  T
Q  346 atgtccggcctaagcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggaca 419  Q
    || ||||||||||||||||||||||| |||||||||||| | | |||||| |||||| |||||| |||||||||    
T  77734 atatccggcctaagcccactctcaaaattcacacacttcgagatcatagcgtcctcaacattgaagtagggaca 77661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 73501 - 73457
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttc 205  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  73501 caccagattctctcttctttcctttgtccttgttgtaaggttttc 73457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 77882 - 77838
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttc 205  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  77882 caccagattctctcttctttcctttgtccttgttgtaaggttttc 77838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 161 - 435
Target Start/End: Original strand, 90902 - 91176
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    ||||||| ||||| |||||||||||||||||| |||| || |||| | | | ||| ||||| ||||| || |||  |||||||||||||||||||| |||    
T  90902 caccagactctctattctttcctttgtccttgttgtacggctttccaactccatgccctctacctcttttatcattctgagccttgtagtaattagtctt 91001  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    |||  |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| || |||||||| | || |||||||    
T  91002 agctctcccagcatcatcaaacatacgacacttatgcaccaaagtttcaaagtctctgatctcctgaacacacatttattgatagattttcgtcctaagc 91101  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||    
T  91102 ccactctcaaacttcacatacttcgaaatcttagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 91176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 168 - 435
Target Start/End: Original strand, 8564 - 8831
Alignment:
Q  168 ttctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagacttagccttc 267  Q
    ||||||||||||||| ||||||||| |||| |  || | | | | | | |||||||||||||| |||  ||||||||| |||||||||| ||||||  |     
T  8564 ttctctcttctttcccttgtccttgttgtacgacttcccaactccaaggcctcttcctctcttctcattctgagccttatagtaattagtcttagctctt 8663  T
Q  268 ccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactct 367  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||  |||||||| || | ||||||||||||||| |    
T  8664 ccaacatcatcaaacatacgacacttatgtaccaaagtatcaaagtctcggatctcctggacacacaaatactgataaatattcggcctaagcccacttt 8763  T
Q  368 caaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||||| ||||||||| ||||||||||||| | |||||||||||| ||| |||||||||||||||||    
T  8764 caaactttacacacttcgaaaccatagcatctttagcattgatgtacggataaaacctcgaaagctcc 8831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 274 - 435
Target Start/End: Complemental strand, 20667 - 20506
Alignment:
Q  274 tcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaaact 373  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||    
T  20667 tcatcaaacatatgacacctatgcaccaaagtatcaaagtctcggatctcctgaacacacatatactggtagatatccggcctaagcccactttcaaact 20568  T
Q  374 tcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||||||||  ||||||| ||||||| |||||| ||||| ||||||||||||  |||||||    
T  20567 tcacacacttggaaaccatcgcatccttagcattaatgtacggacaaaacctcacaagctcc 20506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 274 - 435
Target Start/End: Complemental strand, 30243 - 30082
Alignment:
Q  274 tcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaaact 373  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||||||    
T  30243 tcatcaaacatatgacacctatgcaccaaagtatcaaagtctcggatctcctgaacacacatatactggtagatatccggcctaagcccactttcaaact 30144  T
Q  374 tcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||||||||  ||||||| ||||||| |||||| ||||| ||||||||||||  |||||||    
T  30143 tcacacacttggaaaccatcgcatccttagcattaatgtacggacaaaacctcacaagctcc 30082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 241 - 435
Target Start/End: Original strand, 16381 - 16575
Alignment:
Q  241 gccttgtagtaattagacttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtact 340  Q
    ||||| || |||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16381 gccttataataatcagacttaactttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcttgaacacacatgtact 16480  T
Q  341 gatagatgtccggcctaagcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||||| ||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||| || ||||||    
T  16481 gatagatatccggcccaagtccactctcaaacttcacacgcttcgaaaccatagcatcctcaagattgatgtagggacaaaacctagacagctcc 16575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 161 - 435
Target Start/End: Original strand, 3103 - 3385
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||| |||||||| ||| || ||||||||| | | | ||| ||| |||| ||||| |||  |||||||||||||||| ||| |||    
T  3103 caccagcttctctcttcttccctttgtctttgttgcaaggttttccaactccatggccttttcccctcttctcattctgagccttgtagtaactagtctt 3202  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaa--------agtctcggatctcctgaacacacatgtactgatagatgtccg 352  Q
     ||  | |||| |||| |||||||||||||||||||||||||||||||||        ||||||||||||| || | |||||| ||||||||||| ||||    
T  3203 ggctcttccagtatcaacaaacatacgacacttatgcaccaaagtatcaaagtctcaaagtctcggatctcttggatacacatatactgatagatatccg 3302  T
Q  353 gcctaagcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  3303 gcctaagcccactctcaaacttcacacacttcgaaaccatatcatcttcagcattgatgtagggacaaaacctcgaaagctcc 3385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 162 - 435
Target Start/End: Complemental strand, 25603 - 25330
Alignment:
Q  162 accagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactta 261  Q
    ||||| |||||||||||| |||||||||||| |||| ||||| | | | | ||| ||  ||||| |||| |||   || |||||||||||||||| ||||    
T  25603 accagcttctctcttcttccctttgtccttgttgtacggtttccaaactccatggccctttcctttcttctcatgttgcgccttgtagtaattagcctta 25504  T
Q  262 gccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcc 361  Q
     |||||||| |||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||||| ||||||||||  |||||||||| ||    
T  25503 accttcccaacatcatcaaacatacgacacttatgcaccaaagtatcaaaatcttgaatctcttgaacacacatatactgatagacatccggcctaatcc 25404  T
Q  362 cactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||| ||||||||| | |||||  ||||||| |||||||||||||||||||| ||||||||||||| |||||||    
T  25403 cactttcaaacttcgcgcacttggaaaccatcgcatcctcagcattgatgtacggacaaaacctcggaagctcc 25330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 136749 - 136882
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  136749 aagttgaatattatagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattaaaccatccttgatcttatcaagaaatcatattt 136848  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||    
T  136849 cttgtggcgatcctcgcatccatagacttatcac 136882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 161 - 320
Target Start/End: Original strand, 1611 - 1770
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||| |||||||||||||||||||||||||| ||    
T  1611 caccagattctctcttctttcctttgtccttgctgtaaagttttccaaccccatgtcctcttcctctcttatcaccctgagccttgtagtaattagagtt 1710  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggat 320  Q
    | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1711 aacttttccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggat 1770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0615 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 241 - 435
Target Start/End: Complemental strand, 9205 - 9019
Alignment:
Q  241 gccttgtagtaattagacttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtact 340  Q
    |||||||| |||| ||||||| |||||||| |||||||||||||||||||||||||||||||||| |||        |||||||| |||||||||||| |    
T  9205 gccttgtaataatcagacttaaccttcccaacatcatcaaacatacgacacttatgcaccaaagtctca--------gatctccttaacacacatgtatt 9114  T
Q  341 gatagatgtccggcctaagcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    ||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||    
T  9113 gatagatatccggcctaagtccactctcaaacttcacacacttcgaaaccatagcatcctcagcattgatgtagggacaaaacctagacagctcc 9019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 1032 - 899
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    |||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1032 aagtggaatattatagaattttacacatatgtgtattgagaactttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 933  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||| ||||||||||||||||||    
T  932 cttgtggcgatcctctcatccatagacttatcac 899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 54759 - 54896
Alignment:
Q  26 aaggaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcat 125  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54759 aaggaagttgaattttatagaattttacacatatgtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcat 54858  T
Q  126 atttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  54859 atttcttgtggcgatactcgcatccatagacttatcac 54896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 241 - 376
Target Start/End: Original strand, 35556 - 35691
Alignment:
Q  241 gccttgtagtaattagacttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtact 340  Q
    |||||||| |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  35556 gccttgtaataatcagacttaaccttcccagcatcatcaaacatacgacacttgtgcaccaaagtatcaaagtctcggatctcctgaacacacatatact 35655  T
Q  341 gatagatgtccggcctaagcccactctcaaacttca 376  Q
    ||||||||||||||||||||||||||||||||||||    
T  35656 gatagatgtccggcctaagcccactctcaaacttca 35691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 4753 - 4620
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4753 aagttgaatattatagaattttacacatatgtgtattgagagccttgtctcttgtggttctggattgaaccaaccttgatcttatcaagaaatcatattt 4654  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    |||| ||||||||| |||||||||||||||||||    
T  4653 cttgcggcgatccttgcatccatagacttatcac 4620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 29 - 163
Target Start/End: Complemental strand, 25921 - 25787
Alignment:
Q  29 gaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatt 128  Q
    |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  25921 gaagttgaattttatagaattttacacatatgtgtagtgagagctttgtctcttgtagttctggattgaaccaaccttgatcttatcaagaaatcatatt 25822  T
Q  129 tcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||| |||||||||    
T  25821 tcttgtggcgatcctcgcatccatatacttatcac 25787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 111; Significance: 7e-56; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 297 - 431
Target Start/End: Complemental strand, 8204 - 8070
Alignment:
Q  297 caccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaaacttcacacacttcaaaaccatagca 396  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  8204 caccaaaatatcaaagtctgggatctcctgaacacacatgtactgatagatgtccggcctaagcgcactctcaaacttcacacacttcgaaatcatagca 8105  T
Q  397 tcctcagcattgatgtagggacaaaacctcgaaag 431  Q
    |||||||||||||||||||||||||||||| ||||    
T  8104 tcctcagcattgatgtagggacaaaacctcaaaag 8070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 29 - 162
Target Start/End: Original strand, 33209 - 33341
Alignment:
Q  29 gaagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatt 128  Q
    |||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  33209 gaagttgaattttgtagaattttacacatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaattat-tt 33307  T
Q  129 tcttgtggcgatcctcgcatccatagacttatca 162  Q
    ||||||||||||||||||||||||||||||||||    
T  33308 tcttgtggcgatcctcgcatccatagacttatca 33341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 262 - 435
Target Start/End: Complemental strand, 35975 - 35803
Alignment:
Q  262 gccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcc 361  Q
    |||||||| || ||||||||||||||||||||||||||||||| ||| || ||||  ||||||||||||||||| ||||||||||| ||||| |||||||    
T  35975 gccttcccggcgtcatcaaacatacgacacttatgcaccaaag-atcgaaatctctaatctcctgaacacacatatactgatagatatccgggctaagcc 35877  T
Q  362 cactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||| |||||||||||||||||| ||||||| ||||| |||||||| ||||| |||||||||||||||||||||    
T  35876 cactttcaaacttcacacacttcgaaaccatcgcatcttcagcattaatgtatggacaaaacctcgaaagctcc 35803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 161 - 434
Target Start/End: Complemental strand, 5917 - 5644
Alignment:
Q  161 caccagattctctcttctttcctttgtccttgctgtaaggttttctagccctatgtcctcttcctctcttttcaccctgagccttgtagtaattagactt 260  Q
    |||||| |||||||||||| |||||||||||| |||| ||||| | |   | ||| ||| ||||| |||| |||   || |||||| |||||||| |  |    
T  5917 caccagcttctctcttcttccctttgtccttgttgtacggtttcccaaatccatgaccttttcctttcttatcattttgtgccttgcagtaattatatct 5818  T
Q  261 agccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagc 360  Q
    | || | |||||||| ||||||||||||| ||||||||||||  ||||||| ||||  ||||||||||||||||| ||||||||||| ||||||||||||    
T  5817 aacccttccagcatcttcaaacatacgacgcttatgcaccaagatatcaaaatctcaaatctcctgaacacacatatactgatagatatccggcctaagc 5718  T
Q  361 ccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctc 434  Q
    ||||| |||||||||||||||||| ||||||| ||||| ||| |||| || || |||||||||| |||||||||    
T  5717 ccactttcaaacttcacacacttcgaaaccattgcatcttcaacattaatatacggacaaaaccacgaaagctc 5644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 219 - 435
Target Start/End: Complemental strand, 32720 - 32505
Alignment:
Q  219 tcttcctctcttttcaccctgagccttgtagtaattagacttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcgg 318  Q
    ||||||||||||||||   || ||||||||||||||||  ||| | || || || |||||||||||||||||||||||||||||||||||||||||| ||    
T  32720 tcttcctctcttttcattgtgtgccttgtagtaattagctttaacttttccggcgtcatcaaacatacgacacttatgcaccaaagtatcaaagtcttgg 32621  T
Q  319 atctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggac 418  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||  | | |||  |||||||| |||| ||||| | ||    
T  32620 atctcctaaacacacatatactgatagatatccggcctaagcccactttcaaaattcacacacttggaca-catcacatcctcaacattaatgtacgaac 32522  T
Q  419 aaaacctcgaaagctcc 435  Q
    ||||||||| |||||||    
T  32521 aaaacctcgcaagctcc 32505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 6608 - 6740
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||  | |||    
T  6608 aagttgaattttatagaattttacacttatgtgtattgagagctttgtctcttgtggttttggattgaaccattcttgatcttatcaag-aatttttttt 6706  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||    
T  6707 cttgtggcgatcctcgcatccatagacttatcac 6740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 9503 - 9635
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    ||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |  | |||    
T  9503 aagttgaatttgatagaattttacacttatgtgtattgagagctttgtctcttgtggttctggattgaaccattcttgttcttatcaagaatttct-ttt 9601  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||| ||||||||||||||  ||||||||||    
T  9602 cttgtggggatcctcgcatccaccgacttatcac 9635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 17170 - 17302
Alignment:
Q  30 aagttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatattt 129  Q
    ||||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |  | |||    
T  17170 aagttgaatttgatagaattttacacttatgtgtattgagagctttgtctcttgtggttctggattgaaccattcttgttcttatcaagaatttct-ttt 17268  T
Q  130 cttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||| ||||||||||||||  ||||||||||    
T  17269 cttgtggggatcctcgcatccaccgacttatcac 17302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 22730 - 22641
Alignment:
Q  74 ttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22730 ttgtctcttgtggttctggattgaaccatccttgatcttatcaagaaatcatatttcttgtggcgatcctcgcatccatagacttatcac 22641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 272 - 432
Target Start/End: Original strand, 4001 - 4161
Alignment:
Q  272 catcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccactctcaaa 371  Q
    |||||||||||||||||||||||||||||||||||||||| |||  ||||||||| ||||| || |||||||| || ||| ||||||||| ||| |||||    
T  4001 catcatcaaacatacgacacttatgcaccaaagtatcaaaatcttcgatctcctggacacaaatatactgatacatatccagcctaagcctactttcaaa 4100  T
Q  372 cttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagc 432  Q
    ||||||||||||  |||||||| ||||||| ||||||||||| || |||||||| ||||||    
T  4101 cttcacacacttggaaaccataacatcctccgcattgatgtacgggcaaaacctggaaagc 4161  T

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Target: scaffold0058 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 258 - 435
Target Start/End: Original strand, 77918 - 78095
Alignment:
Q  258 cttagccttcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggccta 357  Q
    ||||||||||||||| ||||||||||  |||||||| |||||||||||||||||||| |  ||||| ||||  || || |||||||| || || |||||     
T  77918 cttagccttcccagcgtcatcaaacaggcgacacttgtgcaccaaagtatcaaagtcacaaatctcatgaaagcagatatactgataaatctcgggcctc 78017  T
Q  358 agcccactctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |  |||||||||||||||||||| ||| | ||||||||||||||| |||| |||||| |||||||||| || ||||||    
T  78018 aatccactctcaaacttcacacatttcgacaccatagcatcctcaacattaatgtagcgacaaaaccttgatagctcc 78095  T

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Target: scaffold0269 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 1592 - 1491
Alignment:
Q  1 taaatagagcacgaaaatgatatgtaagga-agttgaatattatagaattttacgcatatgtgtattgagagctttgtctcttgtggttctggattgaac 99  Q
    |||||| |||||||||||  |||||||  | |||||||| |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  1592 taaatatagcacgaaaattctatgtaaaaagagttgaattttatagaattttacacttatgtgtattgagagctttgtctcttatggttctggattgaac 1493  T
Q  100 ca 101  Q
    ||    
T  1492 ca 1491  T

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Target: scaffold0018 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 266 - 428
Target Start/End: Original strand, 49164 - 49326
Alignment:
Q  266 tcccagcatcatcaaacatacgacacttatgcaccaaagtatcaaagtctcggatctcctgaacacacatgtactgatagatgtccggcctaagcccact 365  Q
    |||| ||||||| ||||||  ||||||| ||||||||||||||||| |||| |||||| |||| ||| ||||| ||||| || || ||||| |  |||||    
T  49164 tcccggcatcattaaacatgtgacacttgtgcaccaaagtatcaaaatctctgatctcatgaaaacagatgtattgataaatctcaggcctcaaaccact 49263  T
Q  366 ctcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcga 428  Q
    ||||||||||||||| ||  | | ||||||||||||| |||| ||||| || |||||| ||||    
T  49264 ctcaaacttcacacatttagatatcatagcatcctcaacattaatgtacgggcaaaacatcga 49326  T

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Target: scaffold0018; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 202 - 141
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  202 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 141  T

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Target: scaffold0193 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 367 - 435
Target Start/End: Original strand, 2182 - 2250
Alignment:
Q  367 tcaaacttcacacacttcaaaaccatagcatcctcagcattgatgtagggacaaaacctcgaaagctcc 435  Q
    |||||||||||||||||| ||||||| ||||| ||| |||| ||||| ||||||| |||||||||||||    
T  2182 tcaaacttcacacacttcgaaaccatcgcatcttcaacattaatgtacggacaaatcctcgaaagctcc 2250  T

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Target: scaffold0254 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 24372 - 24311
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  24372 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 24311  T

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Target: scaffold0180 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 10911 - 10850
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  10911 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 10850  T

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Target: scaffold0139 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 6465 - 6526
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  6465 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 6526  T

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Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 374851 - 374790
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||||||||||||||||||    
T  374851 tggttctggattgaaccatgcattgatcttatcaagaaaccacgtttcttgtggcgatcctc 374790  T

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Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 55425 - 55486
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||| ||||||||| ||  ||||||||||||||||||    
T  55425 tggttctggattgaaccatgcattgatctcatcaagaaaccacgtttcttgtggcgatcctc 55486  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 241614 - 241675
Alignment:
Q  84 tggttctggattgaaccatcc-ttgatcttatcaagaaatcatatttcttgtggcgatcctc 144  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  |||||||||| |||||||    
T  241614 tggttctggattgaaccatgcgttgatcttatcaagaaaccacgtttcttgtggtgatcctc 241675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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