View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11813_high_3 (Length: 787)

Name: NF11813_high_3
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11813_high_3
NF11813_high_3
[»] chr5 (1 HSPs)
chr5 (24-777)||(5054075-5054826)


Alignment Details
Target: chr5 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 24 - 777
Target Start/End: Complemental strand, 5054826 - 5054075
Alignment:
Q  24 atcaagcacaaacgattaatcatacgtctaatcagttaaacacgaaatttcttatcacgtccatacgccgtaatattttacctataaaacaaaaaattaa 123  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054826 atcaagcacaaacgattgatcatacatctaatcagctaaacacgaaatttcgtatcacgtccatacgccgtaatattttacctataaaacaaaaaattaa 5054727  T
Q  124 atcccacctacaaacacttgtttaatgcatatccacatatattaaactacggaaactaaataaaataataacacattcgatgcactcaataattcatgag 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  5054726 atcccacctacaaacacttgtttaatgcatatccacatatattaaactacggaaactaaataaaataagaacccattcgatgcactcaataattcatgag 5054627  T
Q  224 tttcatgggtgacacaaaagcacagtgttcctggcagctattcaagaaatgtagttagtacgttactttcttatgggagctattgtttgtagtttactat 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054626 tttcatgggtgacacaaaagcacagtgttcctggcagctattcaagaaatttagttagtacgttactttcttatgggagctattgtttgtagtttactat 5054527  T
Q  324 taactaaatattaaaaatcaagtggttacaaaaagcaggtgcatgtgatgatattataagacatgatagtgtcctaacatgaagaaaacaaatagaaagt 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5054526 taactaaatattaaaaatcaagtggttacaaaaagcaggtgcatgtgatgatattataagacatgataatgtcctaacatgaagaaaacaaatagaaagt 5054427  T
Q  424 ttcaaacaaatattgtcatgctggacaaactctcacccgcgtgtgattcatatgctttctccaaaacaactagctgccaccaactctcacatttcatata 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5054426 ttcaaacaaatattgtcatgctggacaaactctcacccgcgtgtgattcatatgctttctccaaaacaactacctgccaccaactctcacatttcatata 5054327  T
Q  524 agatattggtaattcacaacataggtgtagagttataaaatccttctactgtttgtttttaattttgccattctttttcttaaattcatcgttcgtaggt 623  Q
    ||||||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054326 agatattggtaattcacaacatag--gtagagttataaaattcatctactgtttgtttttaattttgccattctttttcttaaattcatcgttcgtaggt 5054229  T
Q  624 aaaagcaattctgtttacttttagaacatcttttgcctccagagacaaaaataatatcctatcctgttacttagtttctccttatttcattccaatttcc 723  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5054228 aaaagcaattctgtttacttttagaacatattttgcctccagagacaaaaataatatcctatcctgttacttagtttctccttatttcattccaatttcc 5054129  T
Q  724 atattattcgttctaagcatacatacatgtgttaaaatttcatgatgtccatct 777  Q
    ||||||||| |||||||||||||||||||||||||||||||||| || ||||||    
T  5054128 atattattctttctaagcatacatacatgtgttaaaatttcatgttggccatct 5054075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University