View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11813_high_33 (Length: 313)
Name: NF11813_high_33
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_high_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 35804262 - 35803980
Alignment:
| Q |
13 |
aaaacaaattagattattcttcaacatgaataatttagnnnnnnnn---cttcttctcataatagaacatgagattccaactaaaagatatatgcaatag |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35804262 |
aaaacaaattagattattcttcaacatgaataatttagtttttttttttcttcttctcataatagaacatgagattccaactaaaagatatatgcaatag |
35804163 |
T |
|
| Q |
110 |
aatattccttctatgtttgtattattagtatatgaaaacaaatcctatacacatggagatcactcatacacaacaagtaaccgctactttatataataga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35804162 |
aatattccttctatgtttgtattattagtatatgaaaacaaatcctatacacatggagatcactcatacacaacaagtaaccgctactttatataataga |
35804063 |
T |
|
| Q |
210 |
ataggaaaagtcctttgtttcatccatatctctgccttatatacttaggtcagaaatatatctcacaaccatcttatccattt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35804062 |
ataggaaaagtcctttgtttcatccatatctctgccttatatacttaggtcagaaatatatctcacaaccatcttatccattt |
35803980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University