View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11813_high_35 (Length: 308)

Name: NF11813_high_35
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11813_high_35
NF11813_high_35
[»] chr3 (9 HSPs)
chr3 (16-301)||(4131530-4131815)
chr3 (31-244)||(4078416-4078629)
chr3 (83-254)||(4058858-4059029)
chr3 (16-248)||(4090522-4090754)
chr3 (83-172)||(4122661-4122750)
chr3 (83-172)||(4105940-4106029)
chr3 (166-254)||(5967446-5967534)
chr3 (144-197)||(4058670-4058723)
chr3 (102-202)||(4105710-4105810)
[»] chr1 (3 HSPs)
chr1 (83-254)||(13935033-13935204)
chr1 (95-259)||(13935277-13935441)
chr1 (140-244)||(17313379-17313483)
[»] scaffold0603 (1 HSPs)
scaffold0603 (140-244)||(3195-3299)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 4131815 - 4131530
Alignment:
Q  16 cataaaacccagtatcaagtgtctttaatgatttcatcccttcaagaatgatctcttcaagattctgtaattgtccaaggggtaagtttcctttgagttt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4131815 cataaaacccagtatcaagtgtctttaatgatttcatcccttcaagaatgatctcttcaagattctgtaattgtccaaggggtaagtttcctttgagttt 4131716  T
Q  116 tggacattgtcgtagtgacagatgttttagacgaggaaactctgcagttgtacctccaatcaacttccaatcttcccactctagcattgtatcaaactct 215  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4131715 tggacattgtcgtagtgacagacgttttagacgaggaaactctgcagttgtacctccaatcaacttccaatcttcccactctagcattgtatcaaactct 4131616  T
Q  216 agtgtctccaagaaggaaaatggttgaaacgaatgagaaatacttcccgtgaactcggtaccaatcctctttattgatttcatctc 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4131615 agtgtctccaagaaggaaaatggttgaaacgaatgagaaatacttcccgtgaactcggtaccaatcctctttattgatttcatctc 4131530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 31 - 244
Target Start/End: Original strand, 4078416 - 4078629
Alignment:
Q  31 caagtgtctttaatgatttcatcccttcaagaatgatctcttcaagattctgtaattgtccaaggggtaagtttcctttgagttttggacattgtcgtag 130  Q
    |||||||||||| ||||||||||| ||||| |  ||  ||||  |||||   ||||||||||||||||| ||||||||||||||| ||||| | ||| ||    
T  4078416 caagtgtctttactgatttcatcctttcaatacggagttcttttagattacttaattgtccaaggggtatgtttcctttgagtttcggacaatttcgcag 4078515  T
Q  131 tgacagatgttttagacgaggaaactctgcagttgtacctccaatcaacttccaatcttcccactctagcattgtatcaaactctagtgtctccaagaag 230  Q
    ||||||| || |||||||||||||||||| || |||||||||  |||||||||| |||| |||||||||||| |||||||| || || |||||||| ||     
T  4078516 tgacagacgtgttagacgaggaaactctgtagatgtacctcctgtcaacttccattctttccactctagcatcgtatcaaattcaagagtctccaataaa 4078615  T
Q  231 gaaaatggttgaaa 244  Q
    | ||||||||||||    
T  4078616 ggaaatggttgaaa 4078629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 83 - 254
Target Start/End: Original strand, 4058858 - 4059029
Alignment:
Q  83 taattgtccaaggggtaagtttcctttgagttttggacattgtcgtagtgacagatgttttagacgaggaaactctgcagttgtacctccaatcaacttc 182  Q
    ||||||||||||||||| ||||||||||||||| ||||| | ||| ||||||||| || ||||||||||||||  || || |||||||||  |||| ||     
T  4058858 taattgtccaaggggtatgtttcctttgagtttcggacaatatcgcagtgacagacgtgttagacgaggaaacattgtagatgtacctcctgtcaaatta 4058957  T
Q  183 caatcttcccactctagcattgtatcaaactctagtgtctccaagaaggaaaatggttgaaacgaatgagaa 254  Q
    || |||| ||||||||||||  ||||||| || || |||||||| || | ||||||||||||| || |||||    
T  4058958 cattctttccactctagcatcatatcaaattcaagagtctccaataaaggaaatggttgaaacaaaggagaa 4059029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 4090522 - 4090754
Alignment:
Q  16 cataaaacccagtatcaagtgtctttaatgatttcatcccttcaagaatgatctcttcaagattctgtaattgtccaaggggtaagtttcctttgagttt 115  Q
    |||| ||| ||||| |||||||||| | ||||||||||||| ||| |||||  ||||  |||||   ||||||||||||||||| |||||| ||||||||    
T  4090522 catagaactcagtaccaagtgtcttcactgatttcatccctacaataatgagttcttttagattacctaattgtccaaggggtatgtttcccttgagttt 4090621  T
Q  116 tggacattgtcgtagtgacagatgttttagacgaggaaactctgcagttgtacctccaatcaacttccaatcttcccactctagcattgtatcaaactct 215  Q
     |||||  ||   || || || ||| |||| |||||||||| || || |||||||||| ||||| |||| |||||||| |||||||| |||| |||   |    
T  4090622 aggacaacgtatcagcgaaagttgtgttaggcgaggaaactttgtagatgtacctccagtcaacgtccattcttcccattctagcatggtatgaaatctt 4090721  T
Q  216 agtgtctccaagaaggaaaatggttgaaacgaa 248  Q
    || |||||||| || | ||||||||||||||||    
T  4090722 agagtctccaataaaggaaatggttgaaacgaa 4090754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 4122661 - 4122750
Alignment:
Q  83 taattgtccaaggggtaagtttcctttgagttttggacattgtcgtagtgacagatgttttagacgaggaaactctgcagttgtacctcc 172  Q
    ||||||||||||||||| ||||||||||||| ||||||| | ||| ||||||||  || ||||||||||||||||||||| |||||||||    
T  4122661 taattgtccaaggggtatgtttcctttgagtcttggacaatttcgcagtgacagccgtgttagacgaggaaactctgcagatgtacctcc 4122750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 172
Target Start/End: Original strand, 4105940 - 4106029
Alignment:
Q  83 taattgtccaaggggtaagtttcctttgagttttggacattgtcgtagtgacagatgttttagacgaggaaactctgcagttgtacctcc 172  Q
    ||||||||||||||||| ||||||||||||||| ||||| | ||  ||||||||| || |||||||||||||||| | || |||||||||    
T  4105940 taattgtccaaggggtatgtttcctttgagtttcggacaatttcacagtgacagacgtgttagacgaggaaactcagtagatgtacctcc 4106029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 254
Target Start/End: Complemental strand, 5967534 - 5967446
Alignment:
Q  166 tacctccaatcaacttccaatcttcccactctagcattgtatcaaactctagtgtctccaagaaggaaaatggttgaaacgaatgagaa 254  Q
    ||||||||||||| ||||| |||||||||||| ||||  | ||||| | ||| ||||||||| ||| |||||||||||| ||| |||||    
T  5967534 tacctccaatcaagttccactcttcccactcttgcatattctcaaaatgtagagtctccaaggagggaaatggttgaaatgaaggagaa 5967446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 4058670 - 4058723
Alignment:
Q  144 agacgaggaaactctgcagttgtacctccaatcaacttccaatcttcccactct 197  Q
    |||| |||||||||||||| |||||||||||| | |||||| || |||||||||    
T  4058670 agactaggaaactctgcagatgtacctccaattagcttccattcctcccactct 4058723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 4105710 - 4105810
Alignment:
Q  102 tttcctttgagttttggacattgtcgtagtgacagatgttttagacgaggaaactctgcagttgtacctccaatcaacttccaatcttcccactctagca 201  Q
    ||||| ||||||||||||||||    |||||||| ||||   |||| | ||||||||| || |||||||||||| | |||||| || ||||||||| |||    
T  4105710 tttcccttgagttttggacatttatatagtgacaaatgtgcaagactaagaaactctgtagatgtacctccaattagcttccactcctcccactcttgca 4105809  T
Q  202 t 202  Q
    |    
T  4105810 t 4105810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 83 - 254
Target Start/End: Complemental strand, 13935204 - 13935033
Alignment:
Q  83 taattgtccaaggggtaagtttcctttgagttttggacattgtcgtagtgacagatgttttagacgaggaaactctgcagttgtacctccaatcaacttc 182  Q
    ||||||||||||||||| ||||||||||||||| ||||| | ||| |||||||||  | |||||||||||||||||| || |||||||||  ||||||||    
T  13935204 taattgtccaaggggtatgtttcctttgagtttcggacaatttcgcagtgacagacatgttagacgaggaaactctgtagatgtacctcctgtcaacttc 13935105  T
Q  183 caatcttcccactctagcattgtatcaaactctagtgtctccaagaaggaaaatggttgaaacgaatgagaa 254  Q
    || |||| |||||||||||| |||||||| || || |||||||| || | ||||||||||||| || |||||    
T  13935104 cattctttccactctagcatcgtatcaaattcaagagtctccaataaaggaaatggttgaaacaaaggagaa 13935033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 259
Target Start/End: Complemental strand, 13935441 - 13935277
Alignment:
Q  95 gggtaagtttcctttgagttttggacattgtcgtagtgacagatgttttagacgaggaaactctgcagttgtacctccaatcaacttccaatcttcccac 194  Q
    ||||| ||||||||||||||| ||||||     |||||||| ||||   |||| ||||||||||| || |||||||||||| | |||||| || ||||||    
T  13935441 gggtatgtttcctttgagtttcggacatccatatagtgacaaatgtgaaagactaggaaactctgtagatgtacctccaattagcttccattcctcccac 13935342  T
Q  195 tctagcattgtatcaaactctagtgtctccaagaaggaaaatggttgaaacgaatgagaaatact 259  Q
    ||| ||||      ||||| ||| ||||||||| ||  ||||||||||||| || ||||| ||||    
T  13935341 tcttgcatatccctaaactgtagagtctccaaggagagaaatggttgaaacaaaggagaattact 13935277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 17313483 - 17313379
Alignment:
Q  140 ttttagacgaggaaactctgcagttgtacctccaatcaacttccaatcttcccactctagcattgtatcaaactctagtgtctccaagaaggaaaatggt 239  Q
    |||||||| |||||| | || |||||||||||||||||  ||||| || ||||| ||| ||||    ||||| | ||| ||||||||| ||| |||||||    
T  17313483 ttttagactaggaaaatttgtagttgtacctccaatcatgttccactcctcccattctggcatatcctcaaagtgtagagtctccaaggagggaaatggt 17313384  T
Q  240 tgaaa 244  Q
    |||||    
T  17313383 tgaaa 17313379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 3195 - 3299
Alignment:
Q  140 ttttagacgaggaaactctgcagttgtacctccaatcaacttccaatcttcccactctagcattgtatcaaactctagtgtctccaagaaggaaaatggt 239  Q
    ||||||| |||||||| ||  | | |||||||||||||| ||||| || ||||||||| ||||  | ||||| | ||| ||||||||| ||| |||||||    
T  3195 ttttagaagaggaaaccctttattcgtacctccaatcaagttccactcctcccactcttgcatattctcaaaatgtagagtctccaaggagggaaatggt 3294  T
Q  240 tgaaa 244  Q
    |||||    
T  3295 tgaaa 3299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University