View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_high_36 (Length: 287)
Name: NF11813_high_36
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 45310362 - 45310082
Alignment:
| Q |
1 |
atttctaacaatcatacaagaag-aaaaaagctattccatctcctgcatgagaggatacgatgtattcaatcccaagaaaaaaccaggatatacatacaa |
99 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45310362 |
atttctaacaatcatacaagaaggaaaaaagttattccatctcctgcatgagaggatacgatgtattcaatcccaagaaaaaaccaggatatacatacaa |
45310263 |
T |
|
| Q |
100 |
atacaatagagttctttttctatcctcagttactaatattgtatgttaagacatttacaaataatcctatccttcataaaaatctcatccaatgtcaatg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45310262 |
atacaatagagttctttttctatcctcagttactaatattgtatattaagacatttacaaataatcctatccttcataaaaatctcatccaatgtcaatg |
45310163 |
T |
|
| Q |
200 |
aatatagtcttataattagctatatacttagctccaaataaactgaggattagtgatgcgaaatctctgtcccctttgctt |
280 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45310162 |
aacatagtcttataattagctatatacttagctccaaataaactgaggattagtgatgcgaaatctctgtccccttcgctt |
45310082 |
T |
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