View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_high_4 (Length: 714)
Name: NF11813_high_4
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 74 - 362
Target Start/End: Complemental strand, 5042964 - 5042675
Alignment:
| Q |
74 |
tgtacatgattgtacaaatatcatttctcatatcaaagtaaaaaatacggtgttgannnnnnnnnnnnngtttaattatctagctgtaaatccatgtccg |
173 |
Q |
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| T |
5042964 |
tgtacatgattgtataaatatcatttctcatatcaaagtaaaaaatacggtgttgatttttacttttttgtttaattatctagctgtaaatccatgtctg |
5042865 |
T |
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| Q |
174 |
tttgtgtgagcttgtcactcacatcagatatagtaaaacttattctatttgtggttctaatgcttaataattgtcttctcatattacatggtaaatgatt |
273 |
Q |
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| T |
5042864 |
tttgtgtgagcttgtcactcacatcagatatagtaaaacttattctatttgtggttctaatgcttaataattgtcttctcatattacatggtaaatgatt |
5042765 |
T |
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| Q |
274 |
tttgaaag-nnnnnnnnnnnttcagatctccccagagtgtgagagttctgcaatcatgtattgaatattatttaattgaaatcagaactt |
362 |
Q |
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| T |
5042764 |
tttgaaagaaaaaaaaagtattcagatcttccgagagtgtgagagttctgcaatcatgtattgaatattgtttaattgaaatcagaactt |
5042675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 436 - 605
Target Start/End: Complemental strand, 5042601 - 5042432
Alignment:
| Q |
436 |
gatctttatgcgatcattatttgaccgcatggaatagaaccttataatatcacatatagtctccaaaatgtgatgtttcaatgtcagaacctattattgt |
535 |
Q |
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| T |
5042601 |
gatctttatgcgatcattatttgaccacatggaatagaaccttataatatcacatatagtctccaaaatgtgatgtttcaatgtcaagacctattattgt |
5042502 |
T |
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| Q |
536 |
ggtgacacattccattgtcacaactcacaaggaaaattattgtacgactcttttttctactttgttttat |
605 |
Q |
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| T |
5042501 |
ggtgacacattccattgtcacaactcacaaggaagattattgtacgactcttttttctactttgttttat |
5042432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 597 - 678
Target Start/End: Complemental strand, 5042247 - 5042166
Alignment:
| Q |
597 |
ttgttttattacttaccggttgagtttattatgagacaaaccaattgcagaggcagatacttattttgctatgagatccttt |
678 |
Q |
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| T |
5042247 |
ttgttttattacttagcggttgaatttattataagacaaaccaattgcagaggcggatacacattttgctatgagatccttt |
5042166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 108
Target Start/End: Complemental strand, 9311063 - 9311034
Alignment:
| Q |
79 |
atgattgtacaaatatcatttctcatatca |
108 |
Q |
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| T |
9311063 |
atgattgtacaaatatcatttctcatatca |
9311034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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