View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_high_40 (Length: 254)
Name: NF11813_high_40
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_high_40 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 5412993 - 5413233
Alignment:
| Q |
10 |
agatgaaaagaagcataatggtcactcacaaaatcttgattttcttttaatnnnnnnnnnnnntgttattctaactttagactaggccattaggagccat |
109 |
Q |
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| T |
5412993 |
agatgaaaagaagcataatggtcactcgcaaaatcttgattttcttttaataaaaaaaaaaaatgttattctaactttagactaggccattaggagccat |
5413092 |
T |
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| Q |
110 |
ctgcataacttttgacacgcaaatttagcatcaaattcgacaacaatatagaaggttaaacaattcgtatgcgattaattatcttaacgagatggttaac |
209 |
Q |
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| T |
5413093 |
ctgcataacttttgacacgcaaatttagcatcaaattcgacaacaatatagaaggttaaacaattcgtatgcgattaattatctaaacgagatggtta-- |
5413190 |
T |
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| Q |
210 |
acacacacatataccgtcaattgttgtaaagcaagagggcattct |
254 |
Q |
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| T |
5413191 |
--acacacatataccgtcaattgttgtaaagcaggagggcattct |
5413233 |
T |
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