View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_high_44 (Length: 250)
Name: NF11813_high_44
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_high_44 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 49158933 - 49158696
Alignment:
| Q |
13 |
gagagggtaacgacttgtatagggaaatgattgagagtggtgtcattaagcttggcgatcagcaggtgaacgcaatattgttcatgactcacattctatt |
112 |
Q |
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| T |
49158933 |
gagagggtaacgacttgtatagggaaatgattgagagtggtgtcattaagcttggcgatcagcaggtgaacacaatattgttcatgactcacattctatt |
49158834 |
T |
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| Q |
113 |
tacgtttatcaaagttcttaactatggttgttttatggattcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcg |
212 |
Q |
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| T |
49158833 |
tacatttatcaaagttcttaactatggttgttttatggattcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcg |
49158734 |
T |
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| Q |
213 |
tgcccgcgttggtcttacaggattgactgttgctgaac |
250 |
Q |
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| T |
49158733 |
tgcccgcgttggtcttacaggattgactgttgctgaac |
49158696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 248
Target Start/End: Complemental strand, 49154728 - 49154634
Alignment:
| Q |
154 |
cagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcgtgcccgcgttggtcttacaggattgactgttgctga |
248 |
Q |
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| T |
49154728 |
cagagtgagagcaaatgtgctcttgtctacggtcaaatgaatgagccccctggtgctcgtgcccgtgtcggtcttactggacttactgttgctga |
49154634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 49154885 - 49154815
Alignment:
| Q |
13 |
gagagggtaacgacttgtatagggaaatgattgagagtggtgtcattaagcttggcgatcagcaggtgaac |
83 |
Q |
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| T |
49154885 |
gagagggtaatgacttgtacagagaaatgattgagagtggtgtcattaagctgggtgaaaagcaggtgaac |
49154815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 27960289 - 27960350
Alignment:
| Q |
152 |
ttcagagtgaaagcaaatgtgctcttgtttatggtcaaatgaacgagccccctggtgctcgt |
213 |
Q |
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| T |
27960289 |
ttcagagtcaaagcaaatgtgcgtttgtgtgtggtcaaataaatgacccccctggtgctcgt |
27960350 |
T |
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