View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11813_high_47 (Length: 242)
Name: NF11813_high_47
Description: NF11813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11813_high_47 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 5413638 - 5413414
Alignment:
| Q |
18 |
ggaaccaggtgaagaaatggaacttctnnnnnnncattttcaggaatttatctctggcctaatgtctttgccaataaacctaccaggaaccaaactctat |
117 |
Q |
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| T |
5413638 |
ggaaccaggtgaagaaatggaacttctaaaaaaacattttcaggaatttatctctggcctaatgtctttgccaataaacctaccaggaaccaaactctat |
5413539 |
T |
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| Q |
118 |
caatctttacaggtagtaatgagattgatttcttctaccatatatagcatgctttgctgaaagtaatgatgacttcacatttggtttcaggcaaaaaaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5413538 |
caatctttacaggtagtaatgagattgatttcttctaccatatatagcatgctttgctgaaagtaatgatgacttcacatttggtttcaggcaaaaaaga |
5413439 |
T |
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| Q |
218 |
aaatggtgaaattagtgagaaaaac |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
5413438 |
aaatggtgaaattagtgagaaaaac |
5413414 |
T |
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